Wall clock time and date at job start Tue Mar 31 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34638 * 117.00112 * 2 1 4 4 O 1.21516 * 119.99803 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00558 * 180.02562 * 3 2 1 6 6 C 1.46491 * 120.00354 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.47193 * 324.99433 * 6 5 3 8 8 C 1.53001 * 109.47435 * 84.99615 * 6 5 3 9 9 C 1.50704 * 109.47499 * 204.99755 * 6 5 3 10 10 O 1.21308 * 119.99173 * 0.02562 * 9 6 5 11 11 N 1.34769 * 120.00349 * 179.97438 * 9 6 5 12 12 C 1.40597 * 119.99949 * 180.02562 * 11 9 6 13 13 C 1.40648 * 126.08176 * 0.04729 * 12 11 9 14 14 N 1.30907 * 108.38298 * 179.70387 * 13 12 11 15 15 N 1.40067 * 108.41113 * 0.40226 * 14 13 12 16 16 C 1.37320 * 126.07294 * 179.85605 * 15 14 13 17 17 H 1.08002 * 120.00430 * 179.69232 * 16 15 14 18 18 C 1.38992 * 119.99664 * 359.41108 * 16 15 14 19 19 N 1.31294 * 120.00157 * 0.27652 * 18 16 15 20 20 Si 1.86803 * 119.99838 * 180.27798 * 18 16 15 21 21 H 1.48504 * 109.47034 * 59.99910 * 20 18 16 22 22 H 1.48498 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 299.99983 * 20 18 16 24 24 C 1.35688 * 126.08014 * 179.97438 * 12 11 9 25 25 H 1.09003 * 109.47078 * 300.00136 * 1 2 3 26 26 H 1.09000 * 109.47191 * 60.00390 * 1 2 3 27 27 H 1.08999 * 109.46844 * 180.02562 * 1 2 3 28 28 H 0.96999 * 119.99560 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.47289 * 179.97438 * 8 6 5 30 30 H 1.08996 * 109.47076 * 300.00250 * 8 6 5 31 31 H 1.09005 * 109.46868 * 60.00235 * 8 6 5 32 32 H 0.97002 * 120.00333 * 359.97438 * 11 9 6 33 33 H 1.07999 * 125.80726 * 359.95383 * 13 12 11 34 34 H 0.97005 * 119.99961 * 179.97438 * 19 18 16 35 35 H 1.07996 * 126.24199 * 0.07665 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0742 2.5755 -0.0011 7 1 3.4889 3.2813 -0.5906 8 6 4.1942 3.0875 1.4357 9 6 5.4494 2.4385 -0.6020 10 8 5.8357 1.3567 -0.9919 11 7 6.2496 3.5178 -0.7071 12 6 7.5324 3.3899 -1.2682 13 6 8.1073 2.2039 -1.7591 14 7 9.3060 2.4806 -2.2065 15 7 9.5467 3.8466 -2.0113 16 6 10.6944 4.5215 -2.3474 17 1 10.7732 5.5815 -2.1561 18 6 11.7569 3.8393 -2.9284 19 7 11.6611 2.5506 -3.1608 20 14 13.3211 4.7559 -3.3784 21 1 13.9088 5.3616 -2.1565 22 1 14.2944 3.8088 -3.9792 23 1 13.0034 5.8260 -4.3577 24 6 8.4354 4.3891 -1.4336 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.9374 0.4568 -0.0005 29 1 4.6894 4.0585 1.4353 30 1 3.1995 3.1867 1.8703 31 1 4.7796 2.3817 2.0252 32 1 5.9402 4.3830 -0.3963 33 1 7.6379 1.2313 -1.7694 34 1 12.4025 2.0746 -3.5666 35 1 8.2999 5.4243 -1.1577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341275587.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:57 Heat of formation + Delta-G solvation = -27.473918 kcal Electronic energy + Delta-G solvation = -21445.475223 eV Core-core repulsion = 17867.243217 eV Total energy + Delta-G solvation = -3578.232006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73909 -39.96078 -38.86138 -36.81666 -35.05065 -34.35851 -33.25289 -31.04916 -30.20913 -27.82062 -27.55130 -25.23903 -24.22646 -21.75680 -20.95326 -20.27570 -19.53703 -19.07225 -17.48113 -17.14076 -16.64179 -16.42575 -15.48959 -15.45755 -15.11502 -14.74880 -14.16963 -13.91492 -13.80026 -13.51371 -13.19803 -12.94734 -12.67245 -12.40797 -12.24216 -11.77554 -11.68434 -11.45235 -11.26362 -10.99055 -10.93437 -10.75252 -10.57991 -10.25063 -9.56341 -9.21188 -9.19813 -8.84725 -8.10312 -6.76658 -6.58592 -4.26420 1.97179 2.63308 2.72630 2.99750 3.03160 3.07399 3.47028 3.62821 3.84009 4.13062 4.36026 4.60237 4.89610 4.94358 4.96401 4.99556 5.02046 5.08996 5.26576 5.43603 5.61157 5.96477 6.04883 6.20144 6.23334 6.39526 6.82917 6.90473 7.02512 7.18972 7.29517 7.81606 8.04946 8.20167 8.22380 8.53719 8.73600 9.33732 9.62729 10.37247 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.055445 B = 0.002979 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.882711 B = 9395.777631 C = 9733.775889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.652 3.348 4 O -0.577 6.577 5 N -0.688 5.688 6 C 0.147 3.853 7 H 0.115 0.885 8 C -0.162 4.162 9 C 0.495 3.505 10 O -0.531 6.531 11 N -0.613 5.613 12 C -0.063 4.063 13 C -0.031 4.031 14 N -0.261 5.261 15 N -0.141 5.141 16 C -0.323 4.323 17 H 0.116 0.884 18 C 0.046 3.954 19 N -0.769 5.769 20 Si 0.935 3.065 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.082 4.082 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.418 0.582 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.399 0.601 33 H 0.176 0.824 34 H 0.276 0.724 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.858 0.378 7.146 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.466 6.466 5 N -0.349 5.349 6 C 0.039 3.961 7 H 0.133 0.867 8 C -0.220 4.220 9 C 0.279 3.721 10 O -0.408 6.408 11 N -0.256 5.256 12 C -0.169 4.169 13 C -0.207 4.207 14 N -0.092 5.092 15 N 0.092 4.908 16 C -0.456 4.456 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.396 5.396 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.233 4.233 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.256 0.744 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.233 0.767 33 H 0.193 0.807 34 H 0.086 0.914 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.772 -0.610 6.214 15.121 hybrid contribution -0.184 0.960 0.348 1.037 sum -13.956 0.349 6.562 15.425 Atomic orbital electron populations 1.23193 0.74403 1.03446 1.02704 1.86262 1.24150 1.30932 1.87051 1.17998 0.83220 0.82202 0.76163 1.90989 1.64688 1.34782 1.56160 1.44303 1.03010 1.10335 1.77259 1.20676 0.91884 0.84831 0.98684 0.86705 1.22187 1.03471 1.01967 0.94398 1.20128 0.86168 0.84849 0.80919 1.90615 1.74299 1.26677 1.49249 1.42348 1.13746 1.10290 1.59181 1.17241 0.87184 0.95454 1.17008 1.24108 0.93901 0.98366 1.04316 1.78268 1.14914 0.91495 1.24490 1.44553 1.08634 1.05407 1.32221 1.19840 0.89875 0.93890 1.41952 0.86600 1.25650 0.99938 0.95701 0.95828 1.70205 1.31178 1.07208 1.30976 0.85888 0.79723 0.79163 0.79339 1.19135 1.20123 1.19137 1.21264 0.90447 0.97699 1.13904 0.91876 0.91814 0.87991 0.74422 0.90468 0.90922 0.91382 0.76705 0.80726 0.91357 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -4.34 10.62 -40.32 -0.43 -4.77 16 3 C 0.65 8.78 8.71 54.05 0.47 9.25 16 4 O -0.58 -8.86 15.80 -19.29 -0.30 -9.16 16 5 N -0.69 -8.92 4.96 -59.87 -0.30 -9.21 16 6 C 0.15 1.85 2.98 -69.08 -0.21 1.64 16 7 H 0.12 1.39 7.58 -51.93 -0.39 1.00 16 8 C -0.16 -1.64 9.38 37.16 0.35 -1.29 16 9 C 0.49 8.07 7.19 -10.99 -0.08 7.99 16 10 O -0.53 -10.57 12.99 5.53 0.07 -10.50 16 11 N -0.61 -10.19 5.36 -10.00 -0.05 -10.25 16 12 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 13 C -0.03 -0.81 10.85 -17.04 -0.18 -0.99 16 14 N -0.26 -7.47 10.40 30.80 0.32 -7.15 16 15 N -0.14 -3.80 3.74 -11.41 -0.04 -3.84 16 16 C -0.32 -8.42 10.25 -14.81 -0.15 -8.57 16 17 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 18 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 19 N -0.77 -21.29 11.81 55.50 0.66 -20.63 16 20 Si 0.94 18.67 29.55 -169.99 -5.02 13.65 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 C -0.08 -1.88 11.49 -16.39 -0.19 -2.06 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.42 5.38 7.90 -40.82 -0.32 5.05 16 29 H 0.08 0.64 7.57 -51.93 -0.39 0.25 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.40 4.99 8.25 -40.82 -0.34 4.66 16 33 H 0.18 4.43 5.92 -52.49 -0.31 4.12 16 34 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -34.19 312.46 -3.83 -38.02 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -3.84 Total: 12.56 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 0.40 Total: 6.58 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.58 Total: -51.09 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.66 Total: -24.43 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.19 -3.83 -38.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341275587.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.544 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds