Wall clock time and date at job start Tue Mar 31 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48494 * 109.47408 * 264.52688 * 3 2 1 5 5 H 1.48506 * 109.46949 * 24.52904 * 3 2 1 6 6 H 1.48500 * 109.47085 * 144.52264 * 3 2 1 7 7 C 1.37878 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99865 * 357.23110 * 7 2 1 9 9 C 1.50701 * 120.00006 * 177.21944 * 7 2 1 10 10 H 1.09001 * 109.46940 * 354.94309 * 9 7 2 11 11 C 1.50697 * 109.47202 * 234.94147 * 9 7 2 12 12 O 1.21279 * 120.00046 * 247.65310 * 11 9 7 13 13 N 1.34773 * 120.00242 * 67.65991 * 11 9 7 14 14 C 1.39403 * 120.00182 * 185.10852 * 13 11 9 15 15 C 1.39044 * 119.69606 * 173.98022 * 14 13 11 16 16 C 1.38353 * 119.10205 * 179.74867 * 15 14 13 17 17 C 1.38840 * 118.49503 * 0.53503 * 16 15 14 18 18 C 1.38079 * 119.30999 * 359.46486 * 17 16 15 19 19 N 1.31942 * 120.84418 * 0.27347 * 18 17 16 20 20 C 1.50704 * 109.46795 * 114.93986 * 9 7 2 21 21 C 1.38237 * 119.99627 * 52.57698 * 20 9 7 22 22 C 1.38244 * 119.99575 * 179.78601 * 21 20 9 23 23 C 1.38229 * 119.99956 * 0.44012 * 22 21 20 24 24 C 1.38234 * 120.00054 * 359.81145 * 23 22 21 25 25 C 1.38226 * 120.00250 * 232.84444 * 20 9 7 26 26 H 0.97004 * 119.99930 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99860 * 5.10849 * 13 11 9 28 28 H 1.07996 * 120.44625 * 359.97438 * 15 14 13 29 29 H 1.08000 * 120.75892 * 180.30020 * 16 15 14 30 30 H 1.07995 * 120.35060 * 179.72953 * 17 16 15 31 31 H 1.07995 * 119.57794 * 180.25024 * 18 17 16 32 32 H 1.08000 * 120.00407 * 359.97438 * 21 20 9 33 33 H 1.07998 * 119.99360 * 180.27605 * 22 21 20 34 34 H 1.08004 * 120.00166 * 179.83456 * 23 22 21 35 35 H 1.08002 * 119.99848 * 180.02562 * 24 23 22 36 36 H 1.08005 * 120.00336 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6123 1.9797 -1.3936 5 1 1.3935 2.6833 0.5813 6 1 3.4840 1.4763 0.8126 7 6 2.0045 -1.1941 0.0005 8 1 1.4654 -2.1288 0.0461 9 6 3.5102 -1.1949 -0.0628 10 1 3.8688 -0.1739 -0.1938 11 6 3.9636 -2.0397 -1.2253 12 8 4.5506 -3.0819 -1.0250 13 7 3.7170 -1.6371 -2.4877 14 6 4.0405 -2.4673 -3.5598 15 6 3.6704 -2.1025 -4.8495 16 6 4.0023 -2.9330 -5.9051 17 6 4.6861 -4.1101 -5.6322 18 6 5.0219 -4.4096 -4.3268 19 7 4.6966 -3.5955 -3.3408 20 6 4.0664 -1.7623 1.2178 21 6 3.6290 -2.9906 1.6768 22 6 4.1426 -3.5131 2.8492 23 6 5.0866 -2.8031 3.5671 24 6 5.5201 -1.5724 3.1107 25 6 5.0098 -1.0519 1.9361 26 1 -0.4850 0.8401 -0.0004 27 1 3.3143 -0.7697 -2.6502 28 1 3.1343 -1.1816 -5.0252 29 1 3.7324 -2.6734 -6.9181 30 1 4.9562 -4.7825 -6.4329 31 1 5.5573 -5.3221 -4.1100 32 1 2.8885 -3.5435 1.1180 33 1 3.8041 -4.4748 3.2054 34 1 5.4859 -3.2101 4.4844 35 1 6.2580 -1.0179 3.6714 36 1 5.3487 -0.0904 1.5796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350613161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:16 Heat of formation + Delta-G solvation = 37.476949 kcal Electronic energy + Delta-G solvation = -21253.105561 eV Core-core repulsion = 18088.539299 eV Total energy + Delta-G solvation = -3164.566262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33024 -38.99880 -37.74941 -34.26676 -33.69754 -32.13577 -31.58379 -30.14374 -29.76046 -27.73882 -24.10448 -23.46516 -22.78071 -21.86446 -20.93326 -19.35904 -17.76790 -17.19530 -16.45977 -16.11317 -15.83396 -15.17150 -14.74303 -14.54911 -14.30986 -14.04948 -13.81164 -13.14473 -12.94744 -12.92208 -12.74243 -12.63021 -12.09703 -11.86892 -11.80244 -11.20620 -11.14313 -10.51957 -10.34218 -10.21516 -10.04375 -9.62017 -9.60311 -9.41008 -8.92854 -8.49616 -8.13747 -7.87432 -7.84479 -6.38085 -4.42118 1.37370 1.56584 2.13587 2.19994 3.02452 3.16287 3.17294 3.43560 3.57883 4.11556 4.26235 4.57108 4.77320 4.95874 4.99073 5.29297 5.29431 5.40032 5.54530 5.59021 5.70992 5.88631 5.90145 5.96972 6.13880 6.18793 6.31539 6.36269 6.38338 6.64013 6.70998 6.83773 7.13108 7.16836 7.21262 7.25349 7.55800 7.71850 7.80615 8.16881 8.47550 8.65120 9.04087 9.17980 10.73149 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.006693 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.358946 B = 4182.397271 C = 5593.173611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.082 3.918 3 Si 0.865 3.135 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.510 4.510 8 H 0.084 0.916 9 C 0.031 3.969 10 H 0.066 0.934 11 C 0.518 3.482 12 O -0.489 6.489 13 N -0.656 5.656 14 C 0.377 3.623 15 C -0.218 4.218 16 C -0.049 4.049 17 C -0.225 4.225 18 C 0.131 3.869 19 N -0.478 5.478 20 C -0.027 4.027 21 C -0.072 4.072 22 C -0.129 4.129 23 C -0.141 4.141 24 C -0.129 4.129 25 C -0.132 4.132 26 H 0.270 0.730 27 H 0.418 0.582 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.153 0.847 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.220 -1.895 -6.412 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.123 4.123 3 Si 0.691 3.309 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.547 4.547 8 H 0.102 0.898 9 C 0.009 3.991 10 H 0.084 0.916 11 C 0.306 3.694 12 O -0.360 6.360 13 N -0.301 5.301 14 C 0.145 3.855 15 C -0.242 4.242 16 C -0.076 4.076 17 C -0.246 4.246 18 C -0.028 4.028 19 N -0.193 5.193 20 C -0.028 4.028 21 C -0.090 4.090 22 C -0.147 4.147 23 C -0.159 4.159 24 C -0.147 4.147 25 C -0.150 4.150 26 H 0.081 0.919 27 H 0.254 0.746 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.170 0.830 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.643 -2.689 -5.247 10.462 hybrid contribution -0.296 1.643 -0.970 1.931 sum 8.346 -1.047 -6.217 10.460 Atomic orbital electron populations 1.69849 1.06201 1.27630 1.47678 1.25068 0.94827 0.98717 0.93667 0.87021 0.80787 0.83818 0.79280 1.19557 1.20674 1.18379 1.20579 0.85914 0.95536 1.52689 0.89754 1.18429 0.98578 0.95057 0.87037 0.91581 1.21910 0.76541 0.87521 0.83427 1.90696 1.37235 1.23781 1.84240 1.43866 1.61182 1.20119 1.04908 1.18730 0.90974 0.89172 0.86664 1.21511 1.07199 1.03467 0.92024 1.21258 0.94511 0.93112 0.98676 1.21924 1.05000 0.99345 0.98371 1.22659 0.94801 0.97338 0.87972 1.67768 1.13108 1.03236 1.35170 1.19857 0.92806 0.93786 0.96383 1.20878 0.98144 0.95136 0.94884 1.21032 0.98110 0.99577 0.95961 1.20878 0.99337 0.95761 0.99940 1.20882 1.00678 0.96322 0.96864 1.20977 0.97960 0.99844 0.96193 0.91940 0.74579 0.84855 0.85084 0.85391 0.83017 0.86429 0.87070 0.87289 0.87211 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.37 13.96 55.43 0.77 -23.59 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.86 18.83 26.99 -169.99 -4.59 14.24 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.26 -5.47 6.72 56.52 0.38 -5.09 16 7 C -0.51 -13.05 8.24 -34.44 -0.28 -13.34 16 8 H 0.08 2.42 7.70 -52.49 -0.40 2.02 16 9 C 0.03 0.70 2.23 -94.07 -0.21 0.49 16 10 H 0.07 1.43 4.49 -51.93 -0.23 1.19 16 11 C 0.52 11.59 6.95 -10.99 -0.08 11.52 16 12 O -0.49 -12.01 13.61 5.56 0.08 -11.94 16 13 N -0.66 -12.79 5.37 -11.43 -0.06 -12.85 16 14 C 0.38 6.91 7.42 -154.71 -1.15 5.76 16 15 C -0.22 -3.15 9.94 -39.24 -0.39 -3.54 16 16 C -0.05 -0.60 10.17 -39.32 -0.40 -1.00 16 17 C -0.22 -2.73 10.11 -39.42 -0.40 -3.13 16 18 C 0.13 1.96 11.18 -17.56 -0.20 1.76 16 19 N -0.48 -9.24 7.89 -12.37 -0.10 -9.34 16 20 C -0.03 -0.61 4.36 -104.62 -0.46 -1.07 16 21 C -0.07 -1.58 8.21 -39.58 -0.33 -1.90 16 22 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 23 C -0.14 -2.44 10.05 -39.59 -0.40 -2.83 16 24 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 25 C -0.13 -2.63 9.67 -39.59 -0.38 -3.02 16 26 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.42 7.23 8.70 -40.82 -0.36 6.87 16 28 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.12 2.69 7.57 -52.49 -0.40 2.30 16 33 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.11 2.02 7.96 -52.48 -0.42 1.61 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -31.44 313.99 -8.65 -40.09 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -3.92 Total: 12.43 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -5.56 Total: -13.78 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.61 Total: -45.78 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.59 Total: 14.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.44 -8.65 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350613161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.565 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds