Wall clock time and date at job start Tue Mar 31 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48494 * 109.47408 * 264.52688 * 3 2 1 5 5 H 1.48506 * 109.46949 * 24.52904 * 3 2 1 6 6 H 1.48500 * 109.47085 * 144.52264 * 3 2 1 7 7 C 1.37878 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99865 * 357.23110 * 7 2 1 9 9 C 1.50701 * 120.00006 * 177.21944 * 7 2 1 10 10 H 1.09001 * 109.46940 * 354.94309 * 9 7 2 11 11 C 1.50697 * 109.47202 * 234.94147 * 9 7 2 12 12 O 1.21279 * 120.00046 * 247.65310 * 11 9 7 13 13 N 1.34773 * 120.00242 * 67.65991 * 11 9 7 14 14 C 1.39403 * 120.00182 * 185.10852 * 13 11 9 15 15 C 1.39044 * 119.69606 * 173.98022 * 14 13 11 16 16 C 1.38353 * 119.10205 * 179.74867 * 15 14 13 17 17 C 1.38840 * 118.49503 * 0.53503 * 16 15 14 18 18 C 1.38079 * 119.30999 * 359.46486 * 17 16 15 19 19 N 1.31942 * 120.84418 * 0.27347 * 18 17 16 20 20 C 1.50704 * 109.46795 * 114.93986 * 9 7 2 21 21 C 1.38237 * 119.99627 * 52.57698 * 20 9 7 22 22 C 1.38244 * 119.99575 * 179.78601 * 21 20 9 23 23 C 1.38229 * 119.99956 * 0.44012 * 22 21 20 24 24 C 1.38234 * 120.00054 * 359.81145 * 23 22 21 25 25 C 1.38226 * 120.00250 * 232.84444 * 20 9 7 26 26 H 0.97004 * 119.99930 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99860 * 5.10849 * 13 11 9 28 28 H 1.07996 * 120.44625 * 359.97438 * 15 14 13 29 29 H 1.08000 * 120.75892 * 180.30020 * 16 15 14 30 30 H 1.07995 * 120.35060 * 179.72953 * 17 16 15 31 31 H 1.07995 * 119.57794 * 180.25024 * 18 17 16 32 32 H 1.08000 * 120.00407 * 359.97438 * 21 20 9 33 33 H 1.07998 * 119.99360 * 180.27605 * 22 21 20 34 34 H 1.08004 * 120.00166 * 179.83456 * 23 22 21 35 35 H 1.08002 * 119.99848 * 180.02562 * 24 23 22 36 36 H 1.08005 * 120.00336 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6123 1.9797 -1.3936 5 1 1.3935 2.6833 0.5813 6 1 3.4840 1.4763 0.8126 7 6 2.0045 -1.1941 0.0005 8 1 1.4654 -2.1288 0.0461 9 6 3.5102 -1.1949 -0.0628 10 1 3.8688 -0.1739 -0.1938 11 6 3.9636 -2.0397 -1.2253 12 8 4.5506 -3.0819 -1.0250 13 7 3.7170 -1.6371 -2.4877 14 6 4.0405 -2.4673 -3.5598 15 6 3.6704 -2.1025 -4.8495 16 6 4.0023 -2.9330 -5.9051 17 6 4.6861 -4.1101 -5.6322 18 6 5.0219 -4.4096 -4.3268 19 7 4.6966 -3.5955 -3.3408 20 6 4.0664 -1.7623 1.2178 21 6 3.6290 -2.9906 1.6768 22 6 4.1426 -3.5131 2.8492 23 6 5.0866 -2.8031 3.5671 24 6 5.5201 -1.5724 3.1107 25 6 5.0098 -1.0519 1.9361 26 1 -0.4850 0.8401 -0.0004 27 1 3.3143 -0.7697 -2.6502 28 1 3.1343 -1.1816 -5.0252 29 1 3.7324 -2.6734 -6.9181 30 1 4.9562 -4.7825 -6.4329 31 1 5.5573 -5.3221 -4.1100 32 1 2.8885 -3.5435 1.1180 33 1 3.8041 -4.4748 3.2054 34 1 5.4859 -3.2101 4.4844 35 1 6.2580 -1.0179 3.6714 36 1 5.3487 -0.0904 1.5796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350613161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:16 Heat of formation + Delta-G solvation = 18.273070 kcal Electronic energy + Delta-G solvation = -21253.938304 eV Core-core repulsion = 18088.539299 eV Total energy + Delta-G solvation = -3165.399005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.70531 -40.46041 -39.24877 -35.77068 -35.52482 -33.45348 -33.22137 -31.64489 -31.02903 -29.37843 -25.84797 -24.71953 -24.10483 -23.38274 -22.38023 -20.94520 -19.29716 -18.94263 -18.05780 -17.53160 -16.95893 -16.57346 -16.30070 -16.02264 -15.87059 -15.47461 -15.20361 -14.82128 -14.53644 -14.45560 -14.13447 -13.86336 -13.73393 -13.43587 -12.93516 -12.79731 -12.78703 -12.07869 -11.95282 -11.73301 -11.70033 -11.41737 -11.01940 -10.80281 -10.76269 -9.93700 -9.64950 -9.39619 -9.16528 -8.37838 -6.48150 0.20186 0.47967 0.62374 0.68448 1.31798 1.38581 1.47097 1.84903 2.14880 2.27465 2.93201 3.04345 3.13155 3.58560 4.01102 4.05115 4.16000 4.19978 4.22488 4.31317 4.36572 4.38154 4.45185 4.50640 4.81009 4.84859 4.86595 5.10047 5.16475 5.30244 5.31931 5.35120 5.46079 5.68358 5.72504 5.91797 5.93232 6.16140 6.26292 6.36160 6.54880 7.13371 7.17254 7.48569 8.77432 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.006693 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.358946 B = 4182.397271 C = 5593.173611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.033 3.967 3 Si 0.926 3.074 4 H -0.239 1.239 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.507 4.507 8 H 0.030 0.970 9 C 0.035 3.965 10 H 0.079 0.921 11 C 0.516 3.484 12 O -0.521 6.521 13 N -0.656 5.656 14 C 0.333 3.667 15 C -0.214 4.214 16 C -0.044 4.044 17 C -0.201 4.201 18 C 0.105 3.895 19 N -0.528 5.528 20 C -0.059 4.059 21 C -0.104 4.104 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.123 4.123 25 C -0.146 4.146 26 H 0.273 0.727 27 H 0.424 0.576 28 H 0.155 0.845 29 H 0.177 0.823 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.581 -0.805 -7.447 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.167 4.167 3 Si 0.748 3.252 4 H -0.162 1.162 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.545 4.545 8 H 0.048 0.952 9 C 0.014 3.986 10 H 0.097 0.903 11 C 0.304 3.696 12 O -0.394 6.394 13 N -0.302 5.302 14 C 0.103 3.897 15 C -0.237 4.237 16 C -0.070 4.070 17 C -0.222 4.222 18 C -0.052 4.052 19 N -0.244 5.244 20 C -0.060 4.060 21 C -0.122 4.122 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.140 4.140 25 C -0.164 4.164 26 H 0.082 0.918 27 H 0.262 0.738 28 H 0.173 0.827 29 H 0.194 0.806 30 H 0.188 0.812 31 H 0.185 0.815 32 H 0.101 0.899 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.019 -1.617 -6.337 12.813 hybrid contribution -1.017 1.103 -0.730 1.668 sum 10.002 -0.514 -7.067 12.258 Atomic orbital electron populations 1.70000 1.08244 1.28801 1.49616 1.25889 0.95480 1.02526 0.92850 0.86032 0.79622 0.78340 0.81221 1.16249 1.20970 1.16914 1.20444 0.87696 0.93629 1.52694 0.95188 1.18344 0.96295 0.95921 0.88056 0.90293 1.21780 0.76382 0.87007 0.84437 1.90654 1.38987 1.24833 1.84964 1.43660 1.61198 1.20702 1.04605 1.19028 0.93416 0.89762 0.87527 1.21826 1.06440 1.04582 0.90878 1.21829 0.93030 0.92176 0.99966 1.22387 1.02294 0.99494 0.98002 1.23101 0.95673 0.97621 0.88834 1.67581 1.14469 1.04443 1.37899 1.19955 0.94723 0.94633 0.96675 1.20809 0.99004 0.95801 0.96618 1.21334 0.98269 1.00657 0.94915 1.21364 0.97764 0.95284 1.00707 1.21374 1.00377 0.96443 0.95835 1.21256 0.97657 1.00426 0.97048 0.91757 0.73832 0.82749 0.80600 0.81200 0.81465 0.89882 0.84951 0.83063 0.83099 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.03 13.96 21.45 0.30 -53.73 16 2 C 0.03 1.77 5.47 84.66 0.46 2.23 16 3 Si 0.93 38.64 26.99 68.60 1.85 40.49 16 4 H -0.24 -8.75 7.11 99.48 0.71 -8.04 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.25 -9.63 6.72 99.48 0.67 -8.96 16 7 C -0.51 -27.75 8.24 25.60 0.21 -27.54 16 8 H 0.03 1.91 7.70 -2.91 -0.02 1.89 16 9 C 0.04 1.68 2.23 -13.03 -0.03 1.65 16 10 H 0.08 3.42 4.49 -2.39 -0.01 3.41 16 11 C 0.52 24.44 6.95 87.66 0.61 25.05 16 12 O -0.52 -27.32 13.61 -3.03 -0.04 -27.36 16 13 N -0.66 -26.65 5.37 -308.46 -1.66 -28.31 16 14 C 0.33 12.47 7.42 132.92 0.99 13.45 16 15 C -0.21 -5.85 9.94 22.49 0.22 -5.63 16 16 C -0.04 -0.91 10.17 22.44 0.23 -0.68 16 17 C -0.20 -4.25 10.11 22.38 0.23 -4.02 16 18 C 0.11 3.09 11.18 84.64 0.95 4.03 16 19 N -0.53 -21.07 7.89 -193.04 -1.52 -22.60 16 20 C -0.06 -2.72 4.36 -19.87 -0.09 -2.80 16 21 C -0.10 -4.82 8.21 22.27 0.18 -4.64 16 22 C -0.13 -5.04 10.05 22.27 0.22 -4.81 16 23 C -0.13 -4.25 10.05 22.27 0.22 -4.02 16 24 C -0.12 -3.97 10.05 22.27 0.22 -3.74 16 25 C -0.15 -5.68 9.67 22.27 0.22 -5.47 16 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.42 15.11 8.70 -92.71 -0.81 14.30 16 28 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 29 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 31 H 0.17 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.08 4.28 7.57 -2.91 -0.02 4.26 16 33 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.13 4.36 7.96 -2.91 -0.02 4.34 16 Total: -1.00 -75.58 313.99 4.04 -71.54 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: 0.26 Total: 36.89 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 4.85 Total: -16.94 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -2.88 Total: -104.63 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.04 Total: -27.36 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.85 Total: 40.49 kcal Total: -75.58 4.04 -71.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350613161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.814 kcal (2) G-P(sol) polarization free energy of solvation -75.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds