Wall clock time and date at job start Tue Mar 31 2020 05:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00257 * 2 1 4 4 H 1.48499 * 109.47192 * 274.53939 * 3 2 1 5 5 H 1.48502 * 109.47131 * 34.53519 * 3 2 1 6 6 H 1.48496 * 109.47517 * 154.53595 * 3 2 1 7 7 C 1.37885 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99927 * 354.51319 * 7 2 1 9 9 C 1.50699 * 120.00074 * 174.51397 * 7 2 1 10 10 H 1.08998 * 109.46801 * 354.82212 * 9 7 2 11 11 C 1.50695 * 109.46790 * 234.82550 * 9 7 2 12 12 O 1.21716 * 120.00186 * 245.24324 * 11 9 7 13 13 N 1.32301 * 120.00329 * 65.24409 * 11 9 7 14 14 C 1.34671 * 120.00157 * 244.09223 * 13 11 9 15 15 C 1.41183 * 120.66870 * 5.05358 * 14 13 11 16 16 C 1.35344 * 119.26419 * 179.71690 * 15 14 13 17 17 N 1.35428 * 120.68250 * 0.55926 * 16 15 14 18 18 H 0.97008 * 119.27751 * 179.73028 * 17 16 15 19 19 C 1.35428 * 121.44143 * 359.71408 * 17 16 15 20 20 C 1.35352 * 120.68218 * 359.97438 * 19 17 16 21 21 C 1.50691 * 109.47156 * 114.82445 * 9 7 2 22 22 C 1.38235 * 120.00451 * 63.48268 * 21 9 7 23 23 C 1.38234 * 120.00636 * 179.80866 * 22 21 9 24 24 C 1.38240 * 119.99519 * 0.39601 * 23 22 21 25 25 C 1.38231 * 120.00156 * 359.85458 * 24 23 22 26 26 C 1.38232 * 119.99966 * 359.95710 * 25 24 23 27 27 H 0.96997 * 120.00183 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.36755 * 359.97107 * 15 14 13 29 29 H 1.07999 * 119.66112 * 180.28921 * 16 15 14 30 30 H 1.08003 * 119.66100 * 180.02562 * 19 17 16 31 31 H 1.07996 * 120.36572 * 180.02562 * 20 19 17 32 32 H 1.08001 * 119.99555 * 359.97438 * 22 21 9 33 33 H 1.07995 * 120.00212 * 180.22737 * 23 22 21 34 34 H 1.08001 * 119.99908 * 179.83482 * 24 23 22 35 35 H 1.07996 * 120.00114 * 179.97438 * 25 24 23 36 36 H 1.08008 * 120.00098 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4008 2.1018 -1.3957 5 1 1.4979 2.6231 0.7937 6 1 3.5914 1.4144 0.6019 7 6 2.0046 -1.1941 -0.0005 8 1 1.4683 -2.1273 0.0885 9 6 3.5064 -1.1971 -0.1253 10 1 3.8587 -0.1798 -0.2962 11 6 3.9124 -2.0706 -1.2842 12 8 4.5480 -3.0893 -1.0851 13 7 3.5778 -1.7303 -2.5182 14 6 2.7459 -2.5138 -3.2307 15 6 2.1390 -3.6437 -2.6407 16 6 1.3031 -4.4082 -3.3814 17 7 1.0559 -4.1051 -4.6780 18 1 0.4564 -4.6692 -5.1911 19 6 1.6272 -3.0314 -5.2738 20 6 2.4674 -2.2247 -4.5843 21 6 4.1149 -1.7328 1.1449 22 6 3.8701 -3.0370 1.5322 23 6 4.4315 -3.5297 2.6954 24 6 5.2312 -2.7156 3.4756 25 6 5.4718 -1.4098 3.0911 26 6 4.9135 -0.9184 1.9259 27 1 -0.4850 0.8400 0.0004 28 1 2.3363 -3.8929 -1.6085 29 1 0.8316 -5.2713 -2.9352 30 1 1.4096 -2.8162 -6.3095 31 1 2.9198 -1.3696 -5.0644 32 1 3.2423 -3.6719 0.9246 33 1 4.2432 -4.5497 2.9960 34 1 5.6677 -3.0996 4.3858 35 1 6.0962 -0.7737 3.7008 36 1 5.1012 0.1020 1.6256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355143133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:21 Heat of formation + Delta-G solvation = 54.066685 kcal Electronic energy + Delta-G solvation = -21467.450966 eV Core-core repulsion = 18303.604089 eV Total energy + Delta-G solvation = -3163.846877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35785 -38.99939 -37.64807 -34.37062 -33.41553 -31.41610 -31.36819 -30.25134 -30.01896 -27.61101 -24.15867 -23.32033 -22.77859 -21.76812 -20.60448 -19.07332 -18.46334 -17.05561 -16.29020 -16.12965 -15.88040 -14.82614 -14.69618 -14.57012 -14.14558 -14.05505 -13.82065 -13.16759 -12.89304 -12.65824 -12.61255 -12.41086 -11.82810 -11.76488 -11.50588 -11.21684 -10.89970 -10.61928 -10.37674 -9.99832 -9.81177 -9.52933 -9.43786 -9.16652 -8.67358 -8.23743 -8.00241 -7.71176 -6.89547 -6.18474 -4.18490 1.38782 1.66164 2.27056 2.32488 3.07936 3.30457 3.33940 3.38223 3.39849 4.08506 4.37747 4.67158 4.70908 4.86899 5.19188 5.33369 5.47088 5.56882 5.65131 5.69671 5.81013 5.92406 6.06084 6.19448 6.37722 6.43010 6.48464 6.60631 6.71460 6.86359 6.97108 7.04621 7.10342 7.27691 7.34948 7.41968 7.51279 7.71094 7.91079 8.33313 8.56237 8.82103 9.31942 9.43709 10.92795 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.006962 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.441474 B = 4020.602156 C = 5071.401434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.085 3.915 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.494 4.494 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.070 0.930 11 C 0.511 3.489 12 O -0.550 6.550 13 N -0.610 5.610 14 C 0.303 3.697 15 C -0.217 4.217 16 C 0.113 3.887 17 N -0.597 5.597 18 H 0.415 0.585 19 C 0.113 3.887 20 C -0.194 4.194 21 C -0.024 4.024 22 C -0.078 4.078 23 C -0.130 4.130 24 C -0.147 4.147 25 C -0.129 4.129 26 C -0.133 4.133 27 H 0.266 0.734 28 H 0.143 0.857 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 -7.670 -8.565 11.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.118 4.118 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.095 0.905 9 C -0.003 4.003 10 H 0.088 0.912 11 C 0.301 3.699 12 O -0.430 6.430 13 N -0.342 5.342 14 C 0.141 3.859 15 C -0.244 4.244 16 C -0.016 4.016 17 N -0.202 5.202 18 H 0.249 0.751 19 C -0.016 4.016 20 C -0.220 4.220 21 C -0.025 4.025 22 C -0.096 4.096 23 C -0.148 4.148 24 C -0.165 4.165 25 C -0.147 4.147 26 C -0.152 4.152 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.178 0.822 30 H 0.181 0.819 31 H 0.164 0.836 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.373 -7.256 -8.334 11.136 hybrid contribution -0.276 0.398 0.309 0.575 sum 1.097 -6.858 -8.025 10.613 Atomic orbital electron populations 1.69874 1.06224 1.27254 1.49020 1.24989 0.94721 0.98897 0.93238 0.86886 0.80662 0.83601 0.78931 1.19644 1.21230 1.18409 1.20413 0.86271 0.95104 1.51331 0.90491 1.18626 0.97936 0.96502 0.87196 0.91177 1.22008 0.76134 0.83901 0.87893 1.90656 1.38350 1.26579 1.87389 1.68065 1.24490 1.32133 1.09533 1.18558 0.89980 0.86276 0.91064 1.21724 1.02458 0.98085 1.02095 1.21585 0.96860 0.99536 0.83629 1.40821 1.42763 1.25808 1.10830 0.75091 1.21627 0.93971 0.87659 0.98343 1.20625 1.04277 1.03277 0.93829 1.20118 0.92326 0.93317 0.96782 1.20793 0.98305 0.95314 0.95162 1.20986 0.99048 0.99035 0.95747 1.20828 1.01184 0.94579 0.99900 1.20887 1.00941 0.95730 0.97105 1.21028 0.98816 0.99504 0.95809 0.92404 0.83904 0.82212 0.81922 0.83620 0.87017 0.87297 0.87430 0.87306 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 2 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 3 Si 0.87 21.96 27.24 -169.99 -4.63 17.33 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.29 5.82 56.52 0.33 -5.97 16 7 C -0.49 -13.93 8.51 -34.44 -0.29 -14.22 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.02 0.50 2.29 -94.08 -0.22 0.28 16 10 H 0.07 1.87 4.33 -51.93 -0.23 1.65 16 11 C 0.51 13.18 5.05 -12.08 -0.06 13.12 16 12 O -0.55 -14.61 14.57 5.17 0.08 -14.54 16 13 N -0.61 -14.85 10.39 -10.39 -0.11 -14.96 16 14 C 0.30 6.11 6.58 -84.38 -0.55 5.55 16 15 C -0.22 -3.93 9.03 -39.50 -0.36 -4.29 16 16 C 0.11 1.35 11.17 -17.00 -0.19 1.16 16 17 N -0.60 -5.09 5.23 -13.05 -0.07 -5.16 16 18 H 0.41 1.62 8.90 -40.82 -0.36 1.26 16 19 C 0.11 1.09 11.17 -16.99 -0.19 0.90 16 20 C -0.19 -2.88 10.00 -39.49 -0.39 -3.27 16 21 C -0.02 -0.60 4.49 -104.63 -0.47 -1.07 16 22 C -0.08 -1.80 7.98 -39.58 -0.32 -2.11 16 23 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 24 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 25 C -0.13 -2.49 10.05 -39.59 -0.40 -2.89 16 26 C -0.13 -2.99 9.67 -39.58 -0.38 -3.37 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.14 2.98 6.69 -52.49 -0.35 2.63 16 29 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.16 0.77 8.06 -52.48 -0.42 0.35 16 31 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.11 2.63 7.62 -52.49 -0.40 2.23 16 33 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.11 2.38 7.37 -52.48 -0.39 2.00 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -37.80 312.59 -7.86 -45.65 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.89 Total: 6.50 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -4.71 Total: -13.97 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.60 Total: -45.69 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.63 Total: 17.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -37.80 -7.86 -45.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355143133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.717 kcal (2) G-P(sol) polarization free energy of solvation -37.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds