Wall clock time and date at job start Tue Mar 31 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 116.99489 * 2 1 4 4 C 1.38743 * 120.04985 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94009 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05971 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94570 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47358 * 359.97438 * 7 6 5 9 9 C 1.53006 * 109.46866 * 239.99789 * 7 6 5 10 10 S 1.81391 * 109.47049 * 119.99852 * 7 6 5 11 11 C 1.81407 * 102.99994 * 185.00065 * 10 7 6 12 12 C 1.52995 * 109.47179 * 180.02562 * 11 10 7 13 13 H 1.09002 * 109.47366 * 59.99598 * 12 11 10 14 14 O 1.42900 * 109.47016 * 299.99711 * 12 11 10 15 15 C 1.50703 * 109.47357 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99491 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00400 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99717 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00088 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47087 * 59.99956 * 19 17 15 21 21 H 1.48502 * 109.47066 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47394 * 299.99878 * 19 17 15 23 23 C 1.38266 * 120.10843 * 0.26960 * 6 5 4 24 24 C 1.38144 * 120.05502 * 359.45370 * 23 6 5 25 25 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47392 * 300.00221 * 1 2 3 27 27 H 1.08998 * 109.46766 * 59.99957 * 1 2 3 28 28 H 1.07997 * 120.02963 * 359.95683 * 4 3 2 29 29 H 1.08002 * 119.96828 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 31 31 H 1.08993 * 109.46955 * 300.00219 * 9 7 6 32 32 H 1.09000 * 109.47050 * 60.00048 * 9 7 6 33 33 H 1.09003 * 109.46599 * 299.99961 * 11 10 7 34 34 H 1.08990 * 109.46930 * 59.99996 * 11 10 7 35 35 H 0.96703 * 114.00161 * 300.00239 * 14 12 11 36 36 H 0.96996 * 119.99388 * 179.97438 * 18 17 15 37 37 H 1.08002 * 119.97389 * 179.70576 * 23 6 5 38 38 H 1.08003 * 120.03042 * 180.27362 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2849 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3019 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 1 5.0666 4.8758 0.0004 9 6 3.5743 5.8007 1.2484 10 16 3.4992 5.9452 -1.4820 11 6 4.5236 7.4392 -1.3838 12 6 4.2257 8.3414 -2.5830 13 1 3.1724 8.6218 -2.5740 14 8 4.5216 7.6397 -3.7922 15 6 5.0771 9.5822 -2.5018 16 1 5.7619 9.7142 -1.6771 17 6 4.9820 10.5489 -3.4803 18 7 4.1485 10.3879 -4.4849 19 14 6.0368 12.0872 -3.3792 20 1 7.4718 11.7051 -3.3907 21 1 5.7479 12.9629 -4.5432 22 1 5.7290 12.8169 -2.1230 23 6 1.9210 3.6048 0.0051 24 6 1.2915 2.3751 -0.0001 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 4.0209 0.3800 0.0017 29 1 5.1345 2.5751 0.0000 30 1 4.0695 6.7717 1.2487 31 1 2.4937 5.9434 1.2479 32 1 3.8668 5.2439 2.1386 33 1 4.2975 7.9746 -0.4617 34 1 5.5767 7.1587 -1.3924 35 1 5.4438 7.3589 -3.8684 36 1 4.0814 11.0682 -5.1730 37 1 1.3341 4.5114 0.0095 38 1 0.2129 2.3201 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559364566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:25 Heat of formation + Delta-G solvation = -74.616528 kcal Electronic energy + Delta-G solvation = -19095.381235 eV Core-core repulsion = 16029.105436 eV Total energy + Delta-G solvation = -3066.275800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24304 -37.92080 -35.82682 -33.67393 -32.15925 -31.14341 -29.80156 -29.02803 -27.27895 -25.28374 -23.91654 -22.55538 -21.36292 -20.59011 -18.28626 -17.16563 -16.51063 -16.11847 -15.89653 -15.04536 -14.65260 -14.57949 -14.29829 -14.05349 -13.98866 -13.78076 -13.63141 -13.01998 -12.75387 -12.58893 -12.27911 -12.11123 -11.67088 -11.35641 -11.23158 -11.12763 -11.03582 -10.90178 -10.83738 -10.63311 -10.03712 -9.44309 -9.07254 -8.99958 -8.61592 -8.28660 -8.06384 -7.04183 -6.05408 -4.25711 1.21932 1.31412 2.32789 3.10797 3.25105 3.26168 3.31992 3.34051 3.75983 4.35526 4.64770 4.70095 4.79332 4.89626 4.92224 5.12087 5.21342 5.21400 5.29542 5.34677 5.42354 5.57610 5.70882 5.81173 5.91650 5.99189 6.04681 6.17140 6.18857 6.30521 6.34735 6.60227 6.65910 6.69664 7.25502 7.62708 7.77065 8.07010 8.75765 9.35135 9.52270 10.98426 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041210 B = 0.003098 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.289199 B = 9035.161437 C = 9261.669434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.152 4.152 5 C -0.069 4.069 6 C -0.090 4.090 7 C -0.028 4.028 8 H 0.086 0.914 9 C -0.142 4.142 10 S -0.245 6.245 11 C -0.101 4.101 12 C 0.247 3.753 13 H 0.063 0.937 14 O -0.555 6.555 15 C -0.572 4.572 16 H 0.056 0.944 17 C 0.081 3.919 18 N -0.856 5.856 19 Si 0.893 3.107 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 C -0.060 4.060 24 C -0.206 4.206 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.345 0.655 36 H 0.263 0.737 37 H 0.131 0.869 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 -17.114 11.521 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.170 4.170 5 C -0.089 4.089 6 C -0.092 4.092 7 C -0.157 4.157 8 H 0.105 0.895 9 C -0.201 4.201 10 S -0.014 6.014 11 C -0.250 4.250 12 C 0.188 3.812 13 H 0.081 0.919 14 O -0.358 6.358 15 C -0.612 4.612 16 H 0.075 0.925 17 C -0.126 4.126 18 N -0.491 5.491 19 Si 0.720 3.280 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.079 4.079 24 C -0.224 4.224 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.189 0.811 36 H 0.073 0.927 37 H 0.149 0.851 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.620 -17.380 10.447 21.043 hybrid contribution 1.830 1.358 1.104 2.533 sum -3.790 -16.022 11.551 20.112 Atomic orbital electron populations 1.23040 0.78506 1.03744 1.01477 1.86046 1.21320 1.27133 1.88909 1.19032 0.92383 0.84041 0.96987 1.20340 0.91316 0.98408 1.06972 1.20834 0.99784 0.90779 0.97500 1.19237 0.93567 0.93178 1.03205 1.21979 1.01820 0.94474 0.97378 0.89517 1.22092 1.02588 0.99684 0.95757 1.87277 1.59140 1.23766 1.31249 1.24614 0.99587 0.94890 1.05886 1.19131 0.97508 0.86558 0.78023 0.91888 1.86608 1.29841 1.76764 1.42542 1.21511 1.25228 1.04340 1.10080 0.92540 1.25040 0.94840 0.97849 0.94920 1.70077 1.34531 1.33836 1.10641 0.86666 0.80861 0.82800 0.77636 1.20082 1.21091 1.20107 1.20869 0.93972 0.97314 0.95736 1.21198 0.99968 0.92197 1.09079 0.88397 0.92709 0.92533 0.85267 0.85321 0.91962 0.91465 0.92338 0.90758 0.91441 0.81122 0.92747 0.85146 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.56 10.50 -19.42 -0.20 -3.76 16 3 C 0.12 1.46 6.69 -39.21 -0.26 1.20 16 4 C -0.15 -1.78 9.99 -39.43 -0.39 -2.18 16 5 C -0.07 -0.84 9.66 -39.61 -0.38 -1.22 16 6 C -0.09 -1.21 4.78 -104.60 -0.50 -1.71 16 7 C -0.03 -0.40 3.01 -27.88 -0.08 -0.48 16 8 H 0.09 1.18 7.87 -51.92 -0.41 0.77 16 9 C -0.14 -1.80 8.91 37.16 0.33 -1.47 16 10 S -0.25 -4.55 20.41 -107.50 -2.19 -6.74 16 11 C -0.10 -2.07 5.27 37.15 0.20 -1.87 16 12 C 0.25 6.27 2.88 -27.88 -0.08 6.19 16 13 H 0.06 1.79 8.14 -51.93 -0.42 1.36 16 14 O -0.56 -14.55 12.32 -35.23 -0.43 -14.98 16 15 C -0.57 -15.49 8.76 -34.44 -0.30 -15.79 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 18 N -0.86 -25.26 12.84 55.43 0.71 -24.55 16 19 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.06 -0.78 8.77 -39.61 -0.35 -1.12 16 24 C -0.21 -2.42 9.04 -39.44 -0.36 -2.78 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.13 1.31 7.94 -52.49 -0.42 0.89 16 30 H 0.06 0.82 6.92 -51.93 -0.36 0.46 16 31 H 0.07 0.84 7.37 -51.93 -0.38 0.46 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.45 7.14 -51.92 -0.37 1.08 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.35 8.06 9.04 45.56 0.41 8.47 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 1.67 7.56 -52.49 -0.40 1.28 16 38 H 0.13 1.21 6.30 -52.48 -0.33 0.88 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -31.35 332.04 -8.13 -39.48 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.70 Total: 7.56 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.29 Total: -17.90 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.71 Total: -24.55 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.64 Total: -18.74 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -2.19 Total: -6.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.35 -8.13 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559364566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.138 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds