Wall clock time and date at job start Tue Mar 31 2020 05:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35896 * 117.00163 * 2 1 4 4 C 1.38733 * 120.05830 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94406 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05614 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.94300 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47157 * 359.97438 * 7 6 5 9 9 C 1.52995 * 109.47381 * 120.00077 * 7 6 5 10 10 S 1.81406 * 109.46848 * 239.99747 * 7 6 5 11 11 C 1.81399 * 102.99894 * 174.99920 * 10 7 6 12 12 C 1.53000 * 109.46958 * 180.02562 * 11 10 7 13 13 H 1.09002 * 109.47398 * 59.99961 * 12 11 10 14 14 O 1.42903 * 109.46726 * 299.99717 * 12 11 10 15 15 C 1.50699 * 109.47083 * 179.97438 * 12 11 10 16 16 H 1.08000 * 119.99792 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47256 * 90.00491 * 19 17 15 21 21 H 1.48506 * 109.46930 * 210.00332 * 19 17 15 22 22 H 1.48499 * 109.47104 * 330.00193 * 19 17 15 23 23 C 1.38263 * 120.11481 * 0.27243 * 6 5 4 24 24 C 1.38146 * 120.05197 * 359.45750 * 23 6 5 25 25 H 1.09002 * 109.46917 * 60.00196 * 1 2 3 26 26 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47143 * 300.00087 * 1 2 3 28 28 H 1.07997 * 120.02831 * 359.95130 * 4 3 2 29 29 H 1.07998 * 119.97230 * 180.02562 * 5 4 3 30 30 H 1.09006 * 109.46950 * 299.99611 * 9 7 6 31 31 H 1.08999 * 109.47535 * 59.99545 * 9 7 6 32 32 H 1.08999 * 109.47302 * 179.97438 * 9 7 6 33 33 H 1.08992 * 109.47090 * 60.00099 * 11 10 7 34 34 H 1.09004 * 109.46981 * 299.99644 * 11 10 7 35 35 H 0.96700 * 114.00234 * 300.00043 * 14 12 11 36 36 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 37 37 H 1.07997 * 119.97220 * 179.70264 * 23 6 5 38 38 H 1.08000 * 120.02867 * 180.26859 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0667 4.8757 -0.0026 9 6 3.5746 5.7995 -1.2523 10 16 3.4991 5.9465 1.4779 11 6 4.5234 7.4403 1.3785 12 6 4.2263 8.3431 2.5775 13 1 4.4525 7.8082 3.5000 14 8 2.8455 8.7108 2.5663 15 6 5.0778 9.5838 2.4953 16 1 5.7626 9.7150 1.6706 17 6 4.9825 10.5513 3.4730 18 7 4.1489 10.3912 4.4776 19 14 6.0374 12.0896 3.3706 20 1 5.3108 13.1385 2.6110 21 1 6.3279 12.5825 4.7410 22 1 7.3120 11.7705 2.6787 23 6 1.9211 3.6048 0.0041 24 6 1.2915 2.3751 -0.0010 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 4.0209 0.3799 -0.0002 29 1 5.1345 2.5750 -0.0019 30 1 3.8672 5.2419 -2.1421 31 1 2.4940 5.9424 -1.2522 32 1 4.0691 6.7709 -1.2529 33 1 4.2976 7.9749 0.4560 34 1 5.5767 7.1598 1.3875 35 1 2.5729 9.1914 1.7727 36 1 4.0821 11.0717 5.1655 37 1 1.3343 4.5114 0.0085 38 1 0.2129 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559364567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:26 Heat of formation + Delta-G solvation = -74.681801 kcal Electronic energy + Delta-G solvation = -19108.534475 eV Core-core repulsion = 16042.255845 eV Total energy + Delta-G solvation = -3066.278630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.24303 -37.92010 -35.83378 -33.66902 -32.16392 -31.14240 -29.79078 -29.04346 -27.28184 -25.28424 -23.90866 -22.55688 -21.35241 -20.60617 -18.28504 -17.16743 -16.50835 -16.11566 -15.89605 -15.03515 -14.66221 -14.56300 -14.28165 -14.21228 -13.91889 -13.70130 -13.63002 -13.00704 -12.75644 -12.62586 -12.29580 -12.11408 -11.58867 -11.50682 -11.14973 -11.12120 -11.03901 -10.89612 -10.84843 -10.61259 -10.04527 -9.43955 -9.07136 -8.99928 -8.62434 -8.28476 -8.06904 -7.04354 -6.05680 -4.25867 1.21804 1.31619 2.32696 3.10750 3.24568 3.25329 3.32395 3.34939 3.76018 4.35377 4.64832 4.70340 4.79511 4.89826 4.92346 5.12370 5.21222 5.21450 5.29709 5.35020 5.42580 5.57957 5.71329 5.81750 5.91070 5.99409 6.04699 6.17385 6.18816 6.30418 6.35671 6.60482 6.65987 6.69260 7.25535 7.63086 7.76962 8.06788 8.75832 9.34480 9.51948 10.98160 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041522 B = 0.003103 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.182328 B = 9022.664833 C = 9274.732249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.152 4.152 5 C -0.070 4.070 6 C -0.091 4.091 7 C -0.028 4.028 8 H 0.086 0.914 9 C -0.141 4.141 10 S -0.246 6.246 11 C -0.101 4.101 12 C 0.247 3.753 13 H 0.064 0.936 14 O -0.555 6.555 15 C -0.571 4.571 16 H 0.057 0.943 17 C 0.080 3.920 18 N -0.856 5.856 19 Si 0.893 3.107 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.058 4.058 24 C -0.206 4.206 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.345 0.655 36 H 0.262 0.738 37 H 0.132 0.868 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 -16.892 -11.767 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.171 4.171 5 C -0.089 4.089 6 C -0.093 4.093 7 C -0.157 4.157 8 H 0.104 0.896 9 C -0.200 4.200 10 S -0.015 6.015 11 C -0.250 4.250 12 C 0.187 3.813 13 H 0.081 0.919 14 O -0.357 6.357 15 C -0.611 4.611 16 H 0.075 0.925 17 C -0.127 4.127 18 N -0.491 5.491 19 Si 0.720 3.280 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.078 4.078 24 C -0.225 4.225 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.188 0.812 36 H 0.072 0.928 37 H 0.149 0.851 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.316 -17.589 -10.205 21.018 hybrid contribution 1.355 1.658 -1.435 2.578 sum -3.961 -15.931 -11.640 20.124 Atomic orbital electron populations 1.23039 0.78498 1.03744 1.01487 1.86042 1.21326 1.27143 1.88905 1.19034 0.92379 0.84045 0.96968 1.20335 0.91320 0.98403 1.07027 1.20835 0.99781 0.90790 0.97524 1.19245 0.93588 0.93164 1.03284 1.21978 1.01746 0.94464 0.97467 0.89582 1.22069 1.02614 0.99620 0.95669 1.87275 1.59466 1.22743 1.31988 1.24612 0.99856 0.94835 1.05669 1.19138 0.80732 0.90812 0.90576 0.91877 1.86611 1.27577 1.77070 1.44463 1.21544 1.24921 1.04559 1.10051 0.92487 1.25042 0.94622 0.98244 0.94752 1.70083 1.34199 1.34013 1.10780 0.86612 0.80741 0.83182 0.77482 1.20449 1.21007 1.19807 1.20880 0.93971 0.97348 0.95584 1.21208 0.99979 0.92196 1.09091 0.92699 0.88399 0.92531 0.85277 0.85328 0.92367 0.91429 0.92014 0.91261 0.90920 0.81186 0.92806 0.85060 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.56 10.50 -19.41 -0.20 -3.76 16 3 C 0.12 1.46 6.69 -39.21 -0.26 1.20 16 4 C -0.15 -1.79 9.99 -39.43 -0.39 -2.18 16 5 C -0.07 -0.84 9.66 -39.61 -0.38 -1.22 16 6 C -0.09 -1.22 4.78 -104.60 -0.50 -1.72 16 7 C -0.03 -0.40 3.01 -27.88 -0.08 -0.48 16 8 H 0.09 1.17 7.87 -51.92 -0.41 0.76 16 9 C -0.14 -1.78 8.91 37.16 0.33 -1.45 16 10 S -0.25 -4.55 20.39 -107.50 -2.19 -6.74 16 11 C -0.10 -2.06 5.27 37.16 0.20 -1.87 16 12 C 0.25 6.26 2.87 -27.88 -0.08 6.18 16 13 H 0.06 1.80 8.14 -51.93 -0.42 1.38 16 14 O -0.56 -14.40 12.33 -35.23 -0.43 -14.83 16 15 C -0.57 -15.46 8.76 -34.44 -0.30 -15.76 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 18 N -0.86 -25.24 12.84 55.43 0.71 -24.53 16 19 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.06 -0.76 8.76 -39.61 -0.35 -1.11 16 24 C -0.21 -2.43 9.04 -39.43 -0.36 -2.78 16 25 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.13 1.31 7.94 -52.49 -0.42 0.89 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.85 7.40 -51.93 -0.38 0.46 16 32 H 0.06 0.81 6.92 -51.93 -0.36 0.45 16 33 H 0.07 1.33 7.14 -51.93 -0.37 0.96 16 34 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 35 H 0.34 7.92 9.04 45.56 0.41 8.34 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.13 1.70 7.59 -52.49 -0.40 1.30 16 38 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -31.31 332.08 -8.13 -39.44 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.71 Total: 7.41 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -1.29 Total: -17.88 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.71 Total: -24.53 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.64 Total: -18.59 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -2.19 Total: -6.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.31 -8.13 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559364567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.243 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds