Wall clock time and date at job start Tue Mar 31 2020 05:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46472 * 2 1 4 4 N 1.46505 * 109.47224 * 119.99521 * 2 1 3 5 5 C 1.34778 * 119.99943 * 275.00355 * 4 2 1 6 6 O 1.21277 * 120.00059 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99637 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.47120 * 299.99695 * 7 5 4 9 9 C 1.52997 * 109.47466 * 59.99942 * 7 5 4 10 10 C 1.50708 * 109.47025 * 180.02562 * 7 5 4 11 11 H 1.08000 * 119.99723 * 359.97438 * 10 7 5 12 12 C 1.37873 * 119.99930 * 179.97438 * 10 7 5 13 13 N 1.31516 * 119.99779 * 179.97438 * 12 10 7 14 14 Si 1.86795 * 120.00284 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47308 * 89.99617 * 14 12 10 16 16 H 1.48501 * 109.47369 * 209.99691 * 14 12 10 17 17 H 1.48502 * 109.47235 * 329.99860 * 14 12 10 18 18 C 1.50699 * 109.47264 * 239.99868 * 2 1 3 19 19 N 1.30845 * 126.18025 * 265.02128 * 18 2 1 20 20 C 1.34580 * 107.26901 * 179.97438 * 19 18 2 21 21 C 1.47757 * 126.05255 * 179.97438 * 20 19 18 22 22 O 1.21472 * 120.00276 * 359.97438 * 21 20 19 23 23 O 1.34719 * 120.00202 * 179.97438 * 21 20 19 24 24 N 1.31540 * 107.89609 * 0.02562 * 20 19 18 25 25 N 1.28843 * 108.68890 * 359.74680 * 24 20 19 26 26 H 0.97005 * 125.74891 * 180.26153 * 25 24 20 27 27 H 1.08993 * 109.47326 * 60.00755 * 1 2 3 28 28 H 1.09006 * 109.46801 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47469 * 299.99928 * 1 2 3 30 30 H 0.97000 * 119.99611 * 94.99857 * 4 2 1 31 31 H 1.09002 * 109.47153 * 59.99773 * 9 7 5 32 32 H 1.09001 * 109.46832 * 299.99964 * 9 7 5 33 33 H 1.09004 * 109.47261 * 179.97438 * 9 7 5 34 34 H 0.96999 * 119.99874 * 180.02562 * 13 12 10 35 35 H 0.96698 * 117.00404 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6499 -0.7283 3.5875 8 1 1.9777 -1.5506 3.8326 9 6 4.0527 -1.2782 3.3215 10 6 2.6999 0.2400 4.7413 11 1 2.3980 1.2670 4.5978 12 6 3.1308 -0.1853 5.9800 13 7 3.1749 0.6597 6.9867 14 14 3.6536 -1.9614 6.2279 15 1 5.1069 -2.0928 5.9526 16 1 3.3765 -2.3680 7.6291 17 1 2.8929 -2.8356 5.2992 18 6 2.0324 -0.7104 -1.2304 19 7 2.3763 -1.9705 -1.3085 20 6 2.7644 -2.2008 -2.5764 21 6 3.2375 -3.4906 -3.1203 22 8 3.3022 -4.4665 -2.3999 23 8 3.5970 -3.5844 -4.4152 24 7 2.6493 -1.0741 -3.2454 25 7 2.2036 -0.1647 -2.4489 26 1 2.0236 0.7583 -2.6867 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 2.2490 -1.6317 1.1527 31 1 4.7248 -0.4559 3.0763 32 1 4.0161 -1.9786 2.4871 33 1 4.4166 -1.7915 4.2115 34 1 3.4784 0.3606 7.8581 35 1 3.9002 -4.4487 -4.7252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573536251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:43 Heat of formation + Delta-G solvation = -32.262067 kcal Electronic energy + Delta-G solvation = -21818.808609 eV Core-core repulsion = 18240.368973 eV Total energy + Delta-G solvation = -3578.439636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.98982 -40.26688 -39.23396 -36.48985 -35.68854 -33.90107 -33.81145 -32.07543 -31.15365 -29.72672 -25.99422 -25.11920 -24.85258 -23.01174 -21.65825 -21.25895 -19.61825 -18.69303 -18.28444 -17.25507 -17.00182 -16.75942 -16.46434 -15.66008 -15.56835 -14.68874 -14.43610 -14.07296 -13.85425 -13.45865 -13.03389 -12.80615 -12.47533 -12.32580 -12.18302 -11.98407 -11.70286 -11.53376 -11.30462 -11.11135 -10.96155 -10.87036 -10.59958 -10.28745 -10.02398 -9.61691 -9.09923 -8.83776 -8.79573 -8.56487 -6.04844 -4.05461 0.74948 1.52738 1.93470 2.33613 2.75127 3.26508 3.35538 3.39277 3.44337 3.46492 3.80364 4.04738 4.39720 4.66150 4.95957 5.02387 5.25490 5.36026 5.48555 5.64701 5.74562 5.87318 5.98328 6.07668 6.16917 6.24018 6.34482 6.45897 6.74297 6.76416 7.16764 7.33721 7.53678 7.64348 8.03134 8.53419 8.96283 9.13492 9.54221 11.07891 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.004215 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.878936 B = 6640.828548 C = 7575.541340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.227 3.773 3 H 0.112 0.888 4 N -0.735 5.735 5 C 0.535 3.465 6 O -0.530 6.530 7 C -0.003 4.003 8 H 0.056 0.944 9 C -0.146 4.146 10 C -0.507 4.507 11 H 0.094 0.906 12 C 0.071 3.929 13 N -0.896 5.896 14 Si 0.883 3.117 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.266 1.266 18 C 0.229 3.771 19 N -0.445 5.445 20 C 0.160 3.840 21 C 0.588 3.412 22 O -0.478 6.478 23 O -0.498 6.498 24 N -0.242 5.242 25 N -0.384 5.384 26 H 0.456 0.544 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.410 0.590 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 -5.237 -22.747 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.119 3.881 3 H 0.130 0.870 4 N -0.392 5.392 5 C 0.324 3.676 6 O -0.404 6.404 7 C -0.024 4.024 8 H 0.073 0.927 9 C -0.204 4.204 10 C -0.545 4.545 11 H 0.112 0.888 12 C -0.130 4.130 13 N -0.534 5.534 14 Si 0.713 3.287 15 H -0.205 1.205 16 H -0.223 1.223 17 H -0.191 1.191 18 C -0.049 4.049 19 N -0.171 5.171 20 C -0.117 4.117 21 C 0.425 3.575 22 O -0.360 6.360 23 O -0.309 6.309 24 N -0.085 5.085 25 N -0.108 5.108 26 H 0.304 0.696 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.246 0.754 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -2.277 -4.647 -22.536 23.122 hybrid contribution 0.556 -1.270 -0.098 1.390 sum -1.721 -5.917 -22.634 23.458 Atomic orbital electron populations 1.22244 0.92757 1.03496 1.03552 1.19155 0.94653 0.95780 0.78545 0.86984 1.46259 1.69902 1.14864 1.08168 1.21380 0.75320 0.87328 0.83606 1.90580 1.48870 1.16418 1.84490 1.19318 0.93922 0.97543 0.91660 0.92682 1.22125 0.98755 0.99873 0.99604 1.20921 1.44304 0.98122 0.91120 0.88824 1.24962 0.95170 0.97075 0.95829 1.69880 1.47305 1.34714 1.01496 0.86934 0.79055 0.86052 0.76656 1.20515 1.22317 1.19070 1.25247 0.99816 0.89661 0.90211 1.71137 1.16277 1.12704 1.16971 1.22181 1.08298 0.92264 0.88986 1.18346 0.74227 0.84849 0.80051 1.90989 1.48849 1.36682 1.59457 1.84558 1.77653 1.42349 1.26346 1.74430 1.15133 0.98282 1.20624 1.45042 1.45427 1.13210 1.07168 0.69623 0.91851 0.91420 0.89594 0.75421 0.92451 0.94507 0.93209 0.92554 0.71793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.47 37.16 0.35 -1.34 16 2 C 0.23 2.75 3.12 -69.08 -0.22 2.53 16 3 H 0.11 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.73 -11.54 4.96 -54.93 -0.27 -11.81 16 5 C 0.53 11.00 7.11 -10.99 -0.08 10.92 16 6 O -0.53 -12.45 15.12 5.56 0.08 -12.37 16 7 C 0.00 -0.07 2.23 -92.92 -0.21 -0.27 16 8 H 0.06 1.24 7.20 -51.93 -0.37 0.86 16 9 C -0.15 -3.04 8.57 37.16 0.32 -2.72 16 10 C -0.51 -14.36 8.96 -34.44 -0.31 -14.67 16 11 H 0.09 3.00 7.00 -52.49 -0.37 2.63 16 12 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 13 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 14 Si 0.88 21.39 24.37 -169.99 -4.14 17.25 16 15 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 16 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 18 C 0.23 2.58 7.21 -155.53 -1.12 1.46 16 19 N -0.44 -6.08 10.66 -8.56 -0.09 -6.17 16 20 C 0.16 2.04 7.99 -156.35 -1.25 0.79 16 21 C 0.59 6.88 8.35 34.62 0.29 7.17 16 22 O -0.48 -6.88 17.88 -19.24 -0.34 -7.23 16 23 O -0.50 -3.89 13.43 -40.54 -0.54 -4.43 16 24 N -0.24 -2.63 12.32 32.06 0.40 -2.24 16 25 N -0.38 -3.32 6.93 32.65 0.23 -3.09 16 26 H 0.46 2.01 8.96 -190.21 -1.71 0.31 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.41 6.20 7.44 -40.82 -0.30 5.90 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.64 7.56 -51.93 -0.39 0.24 16 33 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.42 1.03 9.11 45.56 0.42 1.45 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -37.00 307.60 -5.76 -42.77 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.16 Total: 3.56 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -2.32 Total: 5.81 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 1.03 Total: -50.00 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.80 Total: -24.03 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.00 -5.76 -42.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573536251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.504 kcal (2) G-P(sol) polarization free energy of solvation -37.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds