Wall clock time and date at job start Tue Mar 31 2020 05:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 N 1.46505 * 109.47246 * 119.99829 * 2 1 3 5 5 C 1.46491 * 120.00156 * 294.77482 * 4 2 1 6 6 C 1.50708 * 109.46976 * 262.73035 * 5 4 2 7 7 H 1.07999 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99746 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00471 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99802 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47049 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.46894 * 120.00105 * 10 8 6 13 13 H 1.48500 * 109.47304 * 240.00384 * 10 8 6 14 14 C 1.34777 * 119.99460 * 114.77065 * 4 2 1 15 15 O 1.21580 * 120.00359 * 3.74563 * 14 4 2 16 16 C 1.47623 * 119.99677 * 183.74389 * 14 4 2 17 17 N 1.33062 * 120.52762 * 354.38669 * 16 14 4 18 18 N 1.28710 * 120.36453 * 180.28427 * 17 16 14 19 19 C 1.32951 * 121.55477 * 359.72810 * 18 17 16 20 20 O 1.35293 * 119.47345 * 179.97438 * 19 18 17 21 21 N 1.32468 * 121.05798 * 0.02927 * 19 18 17 22 22 C 1.32862 * 119.51701 * 359.97099 * 21 19 18 23 23 O 1.35283 * 120.71820 * 179.97438 * 22 21 19 24 24 H 1.09004 * 109.46822 * 299.99619 * 1 2 3 25 25 H 1.08996 * 109.46881 * 60.00066 * 1 2 3 26 26 H 1.09005 * 109.46462 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47497 * 240.00154 * 2 1 3 28 28 H 1.09002 * 109.47292 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47271 * 300.00476 * 3 2 1 30 30 H 1.09004 * 109.47048 * 60.00520 * 3 2 1 31 31 H 1.09000 * 109.47691 * 22.72837 * 5 4 2 32 32 H 1.09002 * 109.47602 * 142.73109 * 5 4 2 33 33 H 0.97000 * 120.00432 * 179.97438 * 9 8 6 34 34 H 0.96692 * 114.00322 * 270.03081 * 20 19 18 35 35 H 0.96701 * 113.99675 * 90.00345 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7614 -0.1269 2.5237 6 6 2.9672 0.6534 2.9802 7 1 3.8377 0.7228 2.3447 8 6 2.9586 1.2795 4.2085 9 7 1.8984 1.1954 4.9821 10 14 4.4535 2.2461 4.7747 11 1 5.5064 2.1868 3.7290 12 1 4.0684 3.6610 5.0090 13 1 4.9740 1.6593 6.0356 14 6 2.7041 -1.8446 1.0753 15 8 2.9765 -2.2772 -0.0279 16 6 3.1245 -2.5833 2.2823 17 7 2.9309 -2.0661 3.4929 18 7 3.3036 -2.7104 4.5429 19 6 3.8836 -3.9037 4.4576 20 8 4.2592 -4.5437 5.5888 21 7 4.1006 -4.4757 3.2826 22 6 3.7326 -3.8479 2.1710 23 8 3.9430 -4.4093 0.9583 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 0.8969 0.5353 2.4762 32 1 1.5626 -0.9339 3.2289 33 1 1.8925 1.6356 5.8464 34 1 5.1605 -4.3413 5.8745 35 1 3.2120 -4.9613 0.6483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583888944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:00 Heat of formation + Delta-G solvation = -9.505407 kcal Electronic energy + Delta-G solvation = -23199.719696 eV Core-core repulsion = 19622.266863 eV Total energy + Delta-G solvation = -3577.452833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.68112 -39.29181 -38.07712 -37.38510 -35.82760 -34.05528 -32.99720 -31.99640 -30.52653 -27.33215 -26.63653 -25.70934 -24.72387 -23.05016 -21.74888 -19.79383 -19.36748 -18.65026 -18.24738 -16.84502 -16.41762 -15.93826 -15.75196 -15.50724 -14.50255 -14.39769 -13.79580 -13.52001 -13.23926 -12.91251 -12.56500 -12.45966 -12.36428 -12.24051 -11.75815 -11.65320 -11.38468 -11.17233 -11.04429 -10.97434 -10.81472 -10.52031 -10.15334 -9.97308 -9.67694 -9.61242 -9.41313 -8.85337 -8.38551 -7.80128 -6.10088 -4.08645 0.37358 0.72261 2.75684 2.98376 3.25253 3.34027 3.36115 3.36713 3.51348 3.84473 4.23884 4.39254 4.70127 4.94702 5.27168 5.29318 5.41869 5.60629 5.67992 5.76091 6.05148 6.10915 6.28529 6.36601 6.65178 6.73728 6.77138 6.94707 7.27142 7.32961 7.41921 7.54002 7.81858 8.13787 8.15784 8.59132 8.75188 8.91665 9.49947 10.97253 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.009488 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.560522 B = 2950.337761 C = 4645.541101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.134 3.866 3 C -0.152 4.152 4 N -0.565 5.565 5 C 0.223 3.777 6 C -0.504 4.504 7 H 0.055 0.945 8 C 0.074 3.926 9 N -0.872 5.872 10 Si 0.886 3.114 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.574 3.426 15 O -0.551 6.551 16 C -0.062 4.062 17 N -0.042 5.042 18 N -0.286 5.286 19 C 0.460 3.540 20 O -0.454 6.454 21 N -0.528 5.528 22 C 0.405 3.595 23 O -0.446 6.446 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.263 0.737 34 H 0.415 0.585 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 -6.384 -4.658 7.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 C -0.210 4.210 4 N -0.295 5.295 5 C 0.104 3.896 6 C -0.545 4.545 7 H 0.073 0.927 8 C -0.130 4.130 9 N -0.510 5.510 10 Si 0.714 3.286 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.358 3.642 15 O -0.430 6.430 16 C -0.212 4.212 17 N 0.100 4.900 18 N -0.146 5.146 19 C 0.155 3.845 20 O -0.256 6.256 21 N -0.272 5.272 22 C 0.207 3.793 23 O -0.252 6.252 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.275 0.725 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -0.239 -6.248 -4.064 7.458 hybrid contribution 1.250 0.049 -0.059 1.252 sum 1.011 -6.200 -4.123 7.514 Atomic orbital electron populations 1.22139 0.95475 1.01734 1.02330 1.20996 0.93618 0.93816 0.88548 1.22047 1.01742 0.95150 1.02048 1.48370 1.50541 1.20356 1.10209 1.20116 0.97308 0.95575 0.76623 1.21318 1.00854 1.30094 1.02195 0.92675 1.24783 0.95785 0.96258 0.96170 1.69898 1.28067 1.42527 1.10538 0.86641 0.83342 0.79825 0.78840 1.19987 1.20905 1.20858 1.17072 0.79440 0.81701 0.85955 1.90745 1.57704 1.69242 1.25334 1.24134 1.02716 0.96690 0.97611 1.75401 1.03194 1.18075 0.93351 1.74236 1.12398 1.03909 1.24079 1.22125 0.91367 0.86340 0.84665 1.84651 1.37362 1.67328 1.36298 1.67993 1.21808 1.38774 0.98627 1.19894 0.85758 0.88270 0.85356 1.84693 1.46044 1.67797 1.26658 0.91613 0.92027 0.92981 0.89266 0.92449 0.92951 0.90573 0.94414 0.90808 0.92675 0.72511 0.72635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.26 37.16 0.34 -1.99 16 2 C 0.13 2.31 3.22 -67.92 -0.22 2.09 16 3 C -0.15 -2.55 8.67 37.16 0.32 -2.22 16 4 N -0.57 -11.49 2.38 -168.66 -0.40 -11.89 16 5 C 0.22 5.12 3.90 -5.19 -0.02 5.10 16 6 C -0.50 -12.66 7.24 -34.44 -0.25 -12.91 16 7 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 8 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 9 N -0.87 -23.48 13.29 55.43 0.74 -22.74 16 10 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.57 11.81 7.58 -12.43 -0.09 11.71 16 15 O -0.55 -11.50 14.63 -15.98 -0.23 -11.74 16 16 C -0.06 -1.25 6.71 -82.55 -0.55 -1.80 16 17 N -0.04 -0.92 6.42 33.45 0.21 -0.70 16 18 N -0.29 -5.89 11.60 29.21 0.34 -5.55 16 19 C 0.46 8.06 8.81 -90.57 -0.80 7.27 16 20 O -0.45 -6.38 13.63 -17.57 -0.24 -6.62 16 21 N -0.53 -9.15 10.57 -14.33 -0.15 -9.30 16 22 C 0.40 7.13 7.84 -16.15 -0.13 7.00 16 23 O -0.45 -6.82 11.78 -38.82 -0.46 -7.28 16 24 H 0.06 1.03 6.93 -51.93 -0.36 0.67 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 1.55 6.91 -51.93 -0.36 1.19 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.41 7.09 -51.93 -0.37 1.04 16 31 H 0.04 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.08 1.83 5.18 -53.34 -0.28 1.55 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 34 H 0.41 3.53 9.06 45.56 0.41 3.94 16 35 H 0.41 4.14 9.06 45.56 0.41 4.55 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -31.14 303.22 -4.25 -35.38 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -2.11 Total: 4.21 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: -1.49 Total: 16.08 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.74 Total: -50.19 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.93 Total: -25.63 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.14 -4.25 -35.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583888944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.877 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds