Wall clock time and date at job start Tue Mar 31 2020 05:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47638 * 2 1 4 4 C 1.50698 * 109.47355 * 239.99661 * 2 1 3 5 5 H 1.07997 * 120.00307 * 245.46125 * 4 2 1 6 6 C 1.37882 * 119.99838 * 65.46275 * 4 2 1 7 7 N 1.31520 * 119.99788 * 9.55670 * 6 4 2 8 8 Si 1.86800 * 120.00192 * 189.56026 * 6 4 2 9 9 H 1.48502 * 109.46617 * 84.99215 * 8 6 4 10 10 H 1.48498 * 109.47021 * 204.99131 * 8 6 4 11 11 H 1.48496 * 109.46934 * 324.99509 * 8 6 4 12 12 N 1.46500 * 109.47095 * 119.99981 * 2 1 3 13 13 C 1.34781 * 119.99911 * 275.00064 * 12 2 1 14 14 O 1.21589 * 120.00130 * 359.97438 * 13 12 2 15 15 N 1.34781 * 120.00014 * 180.02562 * 13 12 2 16 16 C 1.40189 * 120.00026 * 179.97438 * 15 13 12 17 17 C 1.40405 * 125.97372 * 0.02562 * 16 15 13 18 18 C 1.35242 * 107.86758 * 179.97438 * 17 16 15 19 19 N 1.34972 * 107.85929 * 0.24191 * 18 17 16 20 20 C 1.46498 * 125.97371 * 179.72385 * 19 18 17 21 21 C 1.50701 * 109.47217 * 124.99965 * 20 19 18 22 22 O 1.20830 * 119.99646 * 359.97438 * 21 20 19 23 23 O 1.34230 * 120.00061 * 179.97438 * 21 20 19 24 24 N 1.31218 * 125.97201 * 179.97438 * 16 15 13 25 25 H 1.09002 * 109.47018 * 303.67763 * 1 2 3 26 26 H 1.08998 * 109.46734 * 63.67775 * 1 2 3 27 27 H 1.08999 * 109.47216 * 183.68170 * 1 2 3 28 28 H 0.96998 * 119.99823 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00444 * 94.99695 * 12 2 1 30 30 H 0.96998 * 119.99838 * 359.97438 * 15 13 12 31 31 H 1.08000 * 126.06384 * 359.95412 * 17 16 15 32 32 H 1.08004 * 126.06940 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.46988 * 244.99513 * 20 19 18 34 34 H 1.08999 * 109.47548 * 4.99566 * 20 19 18 35 35 H 0.96698 * 116.99953 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5786 -1.6371 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.2993 1.0356 -2.5935 8 14 2.1760 -1.1781 -4.0101 9 1 1.0239 -2.0610 -4.3239 10 1 2.4227 -0.2615 -5.1521 11 1 3.3844 -2.0074 -3.7709 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1616 2.4117 15 7 2.5967 -0.6534 3.4575 16 6 2.7311 0.0461 4.6650 17 6 2.4347 1.4032 4.8693 18 6 2.6963 1.6947 6.1638 19 7 3.1464 0.5698 6.7586 20 6 3.5523 0.4409 8.1604 21 6 2.7724 -0.6738 8.8086 22 8 1.9605 -1.2964 8.1658 23 8 2.9797 -0.9751 10.1001 24 7 3.1550 -0.4533 5.8020 25 1 -0.3633 0.5699 0.8552 26 1 -0.3633 0.4557 -0.9211 27 1 -0.3633 -1.0255 0.0660 28 1 1.1324 1.4107 -3.4723 29 1 2.2490 -1.6318 1.1527 30 1 2.8274 -1.5946 3.4140 31 1 2.0640 2.0921 4.1248 32 1 2.5716 2.6578 6.6365 33 1 4.6177 0.2160 8.2109 34 1 3.3530 1.3759 8.6839 35 1 2.4561 -1.6982 10.4718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:49 Heat of formation + Delta-G solvation = -24.389121 kcal Electronic energy + Delta-G solvation = -21346.769820 eV Core-core repulsion = 17768.671580 eV Total energy + Delta-G solvation = -3578.098239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.34263 -40.31923 -39.19443 -36.48633 -35.28725 -34.32243 -32.83495 -32.08988 -29.95593 -28.93095 -27.32972 -25.20316 -22.89129 -22.13911 -21.07419 -20.19416 -19.73787 -18.50075 -17.91398 -17.32650 -17.03778 -16.46382 -16.06304 -15.55759 -15.13142 -14.78808 -14.29714 -14.10862 -13.62057 -13.32607 -13.16790 -12.89112 -12.71901 -12.35577 -11.88942 -11.84759 -11.21277 -11.02238 -11.00810 -10.76389 -10.53309 -10.50162 -10.31982 -10.23083 -9.32670 -9.10372 -8.66756 -8.50285 -8.21106 -7.77953 -6.13788 -4.18973 1.74872 1.82440 2.08546 2.67546 3.00730 3.26739 3.28350 3.33685 3.37007 4.01914 4.28267 4.34816 4.65878 4.71630 4.80512 5.01606 5.20334 5.43696 5.83568 5.99088 6.10357 6.48457 6.75230 6.91033 6.96054 7.03231 7.12179 7.20579 7.44658 7.51129 7.61767 7.69455 7.87007 8.02454 8.13696 8.75859 8.86015 9.24358 9.47619 10.94796 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.046925 B = 0.002956 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.552861 B = 9469.467434 C = 9684.794969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.279 3.721 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.715 5.715 13 C 0.703 3.297 14 O -0.575 6.575 15 N -0.656 5.656 16 C 0.334 3.666 17 C -0.249 4.249 18 C 0.055 3.945 19 N -0.381 5.381 20 C 0.159 3.841 21 C 0.458 3.542 22 O -0.480 6.480 23 O -0.519 6.519 24 N -0.316 5.316 25 H 0.021 0.979 26 H 0.073 0.927 27 H 0.028 0.972 28 H 0.265 0.735 29 H 0.387 0.613 30 H 0.407 0.593 31 H 0.179 0.821 32 H 0.177 0.823 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.468 -1.308 22.330 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.178 3.822 3 H 0.076 0.924 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.517 5.517 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.367 5.367 13 C 0.402 3.598 14 O -0.452 6.452 15 N -0.308 5.308 16 C 0.076 3.924 17 C -0.279 4.279 18 C -0.087 4.087 19 N -0.167 5.167 20 C 0.035 3.965 21 C 0.297 3.703 22 O -0.364 6.364 23 O -0.332 6.332 24 N -0.146 5.146 25 H 0.040 0.960 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.220 0.780 30 H 0.242 0.758 31 H 0.196 0.804 32 H 0.194 0.806 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 4.545 -0.940 22.453 22.927 hybrid contribution -0.284 -1.308 -0.972 1.654 sum 4.261 -2.248 21.481 22.015 Atomic orbital electron populations 1.22051 0.98860 0.98700 1.00619 1.18721 0.90424 0.94378 0.78711 0.92400 1.21163 1.37289 1.08734 0.90335 0.92009 1.24878 0.94974 0.94641 0.99000 1.69986 1.43776 1.13699 1.24268 0.86503 0.78718 0.79916 0.82202 1.20422 1.21171 1.19913 1.45826 1.68563 1.13427 1.08877 1.15958 0.78598 0.85297 0.79949 1.90790 1.56546 1.14098 1.83744 1.41966 1.69177 1.13499 1.06113 1.18956 0.96333 0.91337 0.85815 1.22048 1.12939 0.96107 0.96807 1.22564 1.00134 0.92077 0.93958 1.47435 1.55001 1.07342 1.06926 1.20766 0.99862 0.98013 0.77901 1.23534 0.81922 0.84808 0.80080 1.90848 1.32611 1.49565 1.63359 1.84468 1.65800 1.55802 1.27158 1.77419 1.30377 1.10333 0.96446 0.95967 0.90780 0.95241 0.92518 0.78016 0.75819 0.80367 0.80568 0.85839 0.84517 0.72630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.36 37.16 0.35 -3.17 16 2 C 0.28 7.07 2.42 -69.09 -0.17 6.90 16 3 H 0.06 1.69 7.52 -51.93 -0.39 1.30 16 4 C -0.54 -14.17 8.66 -34.44 -0.30 -14.46 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.86 5.17 -17.82 -0.09 1.76 16 7 N -0.88 -24.92 12.16 55.43 0.67 -24.25 16 8 Si 0.90 20.60 29.55 -169.99 -5.02 15.58 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.72 -15.02 5.07 -59.81 -0.30 -15.33 16 13 C 0.70 14.66 8.50 -86.91 -0.74 13.92 16 14 O -0.58 -13.75 13.13 5.29 0.07 -13.68 16 15 N -0.66 -11.42 5.46 -15.50 -0.08 -11.51 16 16 C 0.33 5.90 8.11 -154.36 -1.25 4.65 16 17 C -0.25 -4.13 9.61 -39.83 -0.38 -4.52 16 18 C 0.05 0.67 11.44 -17.24 -0.20 0.47 16 19 N -0.38 -4.74 3.40 -62.56 -0.21 -4.95 16 20 C 0.16 1.14 7.10 -5.19 -0.04 1.11 16 21 C 0.46 4.25 8.36 36.01 0.30 4.55 16 22 O -0.48 -6.91 16.46 -18.75 -0.31 -7.22 16 23 O -0.52 -3.05 13.42 -39.26 -0.53 -3.57 16 24 N -0.32 -5.17 11.65 31.44 0.37 -4.80 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.94 6.83 -51.93 -0.35 1.59 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.39 6.97 8.54 -40.82 -0.35 6.63 16 30 H 0.41 5.90 8.84 -40.82 -0.36 5.54 16 31 H 0.18 3.32 5.91 -52.49 -0.31 3.01 16 32 H 0.18 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.14 0.40 8.07 -51.93 -0.42 -0.02 16 35 H 0.41 1.00 9.10 45.56 0.41 1.41 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -36.70 313.68 -6.14 -42.84 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -3.00 Total: 10.95 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -2.52 Total: 11.21 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.44 Total: -60.83 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.77 Total: -24.47 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.70 -6.14 -42.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.452 kcal (2) G-P(sol) polarization free energy of solvation -36.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds