Wall clock time and date at job start Tue Mar 31 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.50703 * 109.47185 * 120.00026 * 2 1 3 5 5 H 1.08005 * 119.99525 * 119.99801 * 4 2 1 6 6 C 1.37876 * 120.00249 * 300.00088 * 4 2 1 7 7 N 1.31515 * 119.99465 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00169 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47029 * 89.99871 * 8 6 4 10 10 H 1.48499 * 109.47284 * 209.99909 * 8 6 4 11 11 H 1.48499 * 109.47291 * 330.00030 * 8 6 4 12 12 N 1.46503 * 109.47036 * 240.00136 * 2 1 3 13 13 C 1.34775 * 120.00069 * 84.99916 * 12 2 1 14 14 O 1.21594 * 119.99767 * 359.97438 * 13 12 2 15 15 N 1.34777 * 120.00065 * 179.97438 * 13 12 2 16 16 C 1.40192 * 120.00049 * 180.02562 * 15 13 12 17 17 C 1.40402 * 125.97032 * 359.97438 * 16 15 13 18 18 C 1.35245 * 107.86627 * 179.70432 * 17 16 15 19 19 N 1.34964 * 107.85965 * 0.26430 * 18 17 16 20 20 C 1.46495 * 125.98003 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.47002 * 125.00169 * 20 19 18 22 22 O 1.20821 * 119.99967 * 0.02562 * 21 20 19 23 23 O 1.34229 * 120.00163 * 180.02562 * 21 20 19 24 24 N 1.31206 * 125.97560 * 180.17721 * 16 15 13 25 25 H 1.09001 * 109.46524 * 299.99708 * 1 2 3 26 26 H 1.08993 * 109.46948 * 59.99784 * 1 2 3 27 27 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99349 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99875 * 265.00221 * 12 2 1 30 30 H 0.97005 * 119.99878 * 0.02562 * 15 13 12 31 31 H 1.08002 * 126.07048 * 359.97438 * 17 16 15 32 32 H 1.08000 * 126.07435 * 180.26799 * 18 17 16 33 33 H 1.08994 * 109.47532 * 245.00383 * 20 19 18 34 34 H 1.08999 * 109.47116 * 5.01096 * 20 19 18 35 35 H 0.96701 * 117.00054 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8574 1.1614 -2.4118 15 7 2.5968 -0.6534 -3.4575 16 6 2.7311 0.0461 -4.6650 17 6 2.4348 1.4032 -4.8693 18 6 2.7031 1.6965 -6.1620 19 7 3.1467 0.5700 -6.7585 20 6 3.5506 0.4405 -8.1607 21 6 4.9497 -0.1150 -8.2311 22 8 5.5478 -0.3763 -7.2144 23 8 5.5315 -0.3195 -9.4234 24 7 3.1523 -0.4539 -5.8026 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7096 1.1617 3.4844 29 1 2.2490 -1.6318 -1.1527 30 1 2.8275 -1.5946 -3.4139 31 1 2.0630 2.0919 -4.1250 32 1 2.5836 2.6608 -6.6333 33 1 2.8658 -0.2335 -8.6754 34 1 3.5242 1.4198 -8.6384 35 1 6.4300 -0.6770 -9.4180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222159.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:51 Heat of formation + Delta-G solvation = -23.105172 kcal Electronic energy + Delta-G solvation = -21353.324905 eV Core-core repulsion = 17775.282342 eV Total energy + Delta-G solvation = -3578.042563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.34497 -40.31773 -39.19528 -36.48290 -35.29494 -34.32930 -32.84579 -32.09543 -29.95451 -28.83873 -27.31636 -25.23495 -22.87922 -22.13156 -21.06471 -20.18418 -19.72766 -18.49694 -17.90914 -17.33001 -17.03293 -16.46785 -16.08224 -15.55943 -15.05758 -14.86593 -14.29168 -14.13974 -13.58581 -13.28061 -13.22769 -12.89494 -12.71905 -12.36844 -11.86477 -11.76978 -11.16382 -11.05378 -10.97643 -10.77578 -10.54677 -10.44566 -10.26142 -10.21305 -9.34092 -9.03949 -8.66927 -8.55153 -8.19953 -7.76942 -6.11384 -4.20200 1.74233 1.82901 2.09035 2.67469 3.00554 3.26298 3.28511 3.33567 3.37164 4.01898 4.28103 4.34313 4.65537 4.71592 4.80722 5.01726 5.21597 5.43587 5.83354 5.98858 6.10863 6.48210 6.78708 6.95181 7.00190 7.05622 7.18981 7.20537 7.47536 7.51623 7.61735 7.71797 7.91964 8.09573 8.17440 8.74416 8.85949 9.24194 9.47947 10.94766 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.040157 B = 0.003030 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.102016 B = 9238.711389 C = 9671.094551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.281 3.719 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.716 5.716 13 C 0.703 3.297 14 O -0.576 6.576 15 N -0.656 5.656 16 C 0.335 3.665 17 C -0.249 4.249 18 C 0.055 3.945 19 N -0.381 5.381 20 C 0.159 3.841 21 C 0.458 3.542 22 O -0.479 6.479 23 O -0.520 6.520 24 N -0.316 5.316 25 H 0.091 0.909 26 H 0.016 0.984 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.407 0.593 31 H 0.179 0.821 32 H 0.177 0.823 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 -1.096 -22.413 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.367 5.367 13 C 0.402 3.598 14 O -0.452 6.452 15 N -0.308 5.308 16 C 0.076 3.924 17 C -0.279 4.279 18 C -0.087 4.087 19 N -0.167 5.167 20 C 0.035 3.965 21 C 0.296 3.704 22 O -0.363 6.363 23 O -0.332 6.332 24 N -0.146 5.146 25 H 0.109 0.891 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.242 0.758 31 H 0.196 0.804 32 H 0.194 0.806 33 H 0.141 0.859 34 H 0.155 0.845 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 4.290 -0.812 -22.588 23.007 hybrid contribution 0.943 -0.970 1.225 1.825 sum 5.233 -1.782 -21.364 22.068 Atomic orbital electron populations 1.22111 0.98449 0.99175 1.01006 1.18714 0.90896 0.93798 0.78647 0.93108 1.21217 1.32479 1.13318 0.90226 0.92012 1.24872 0.94798 0.94991 0.99018 1.69906 1.35817 1.22428 1.23907 0.86426 0.78583 0.79829 0.82118 1.20562 1.21079 1.19856 1.45846 1.68540 1.13446 1.08882 1.15956 0.78598 0.85291 0.79961 1.90788 1.56598 1.14114 1.83747 1.41971 1.69170 1.13535 1.06083 1.18952 0.95976 0.91502 0.85992 1.22048 1.13188 0.96079 0.96605 1.22561 1.00489 0.91854 0.93821 1.47428 1.54328 1.07339 1.07612 1.20759 0.90514 1.05213 0.80042 1.23528 0.89445 0.76174 0.81218 1.90849 1.63875 1.45603 1.36012 1.84466 1.36095 1.78390 1.34291 1.77413 1.29616 1.10749 0.96814 0.89057 0.96459 0.95470 0.92551 0.77997 0.75815 0.80373 0.80569 0.85858 0.84519 0.72617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.28 7.15 2.56 -69.08 -0.18 6.97 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.79 11.32 55.43 0.63 -24.17 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.72 -15.09 5.07 -59.81 -0.30 -15.39 16 13 C 0.70 14.68 8.50 -86.92 -0.74 13.95 16 14 O -0.58 -13.76 13.13 5.28 0.07 -13.69 16 15 N -0.66 -11.45 5.45 -15.51 -0.08 -11.53 16 16 C 0.33 5.91 8.11 -154.37 -1.25 4.65 16 17 C -0.25 -4.14 9.61 -39.83 -0.38 -4.52 16 18 C 0.05 0.67 11.44 -17.24 -0.20 0.47 16 19 N -0.38 -4.74 3.40 -62.57 -0.21 -4.95 16 20 C 0.16 1.14 7.10 -5.19 -0.04 1.11 16 21 C 0.46 4.27 8.36 36.01 0.30 4.57 16 22 O -0.48 -6.97 16.46 -18.75 -0.31 -7.28 16 23 O -0.52 -3.07 13.42 -39.25 -0.53 -3.60 16 24 N -0.32 -5.17 11.66 31.44 0.37 -4.80 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 7.03 8.55 -40.82 -0.35 6.68 16 30 H 0.41 5.92 8.84 -40.82 -0.36 5.56 16 31 H 0.18 3.31 5.91 -52.49 -0.31 3.00 16 32 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.14 0.40 8.07 -51.93 -0.42 -0.02 16 35 H 0.41 1.03 9.10 45.56 0.41 1.44 16 LS Contribution 312.39 15.07 4.71 4.71 Total: -1.00 -36.60 312.39 -6.18 -42.78 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -2.96 Total: 11.16 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -2.53 Total: 11.11 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.39 Total: -60.84 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.77 Total: -24.57 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.60 -6.18 -42.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222159.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.679 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds