Wall clock time and date at job start Tue Mar 31 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21593 * 119.99630 * 0.02562 * 13 12 2 15 15 N 1.34768 * 120.00545 * 180.02562 * 13 12 2 16 16 C 1.39541 * 120.00183 * 180.02562 * 15 13 12 17 17 C 1.35732 * 126.10260 * 359.69406 * 16 15 13 18 18 C 1.41055 * 107.79110 * 179.84788 * 17 16 15 19 19 C 1.47595 * 125.97283 * 180.16364 * 18 17 16 20 20 O 1.21498 * 119.99729 * 0.32212 * 19 18 17 21 21 O 1.34723 * 120.00196 * 180.31810 * 19 18 17 22 22 N 1.31920 * 108.06111 * 0.41953 * 18 17 16 23 23 N 1.35972 * 126.09895 * 179.97438 * 16 15 13 24 24 C 1.46501 * 125.95385 * 359.97438 * 23 16 15 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 30 30 H 0.97002 * 120.00208 * 0.02562 * 15 13 12 31 31 H 1.08002 * 126.10423 * 359.97438 * 17 16 15 32 32 H 0.96706 * 116.99976 * 180.02562 * 21 19 18 33 33 H 1.09002 * 109.47445 * 89.99526 * 24 23 16 34 34 H 1.09003 * 109.46909 * 209.99463 * 24 23 16 35 35 H 1.08997 * 109.47084 * 329.98976 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8582 1.1617 -2.4116 15 7 2.5958 -0.6535 -3.4577 16 6 2.7295 0.0429 -4.6596 17 6 2.4396 1.3535 -4.8611 18 6 2.7194 1.6542 -6.2105 19 6 2.5506 2.9695 -6.8586 20 8 2.1415 3.9156 -6.2154 21 8 2.8503 3.1210 -8.1633 22 7 3.1530 0.5532 -6.7935 23 7 3.1684 -0.4719 -5.8391 24 6 3.5850 -1.8571 -6.0712 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7006 1.1552 3.4844 29 1 2.2490 -1.6317 -1.1528 30 1 2.8258 -1.5948 -3.4145 31 1 2.0640 2.0434 -4.1200 32 1 2.7239 4.0011 -8.5435 33 1 2.7231 -2.4490 -6.3795 34 1 4.3421 -1.8823 -6.8549 35 1 3.9997 -2.2706 -5.1519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:52 Heat of formation + Delta-G solvation = -28.296026 kcal Electronic energy + Delta-G solvation = -21628.475788 eV Core-core repulsion = 18050.208133 eV Total energy + Delta-G solvation = -3578.267655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60932 -39.94715 -39.30204 -36.12581 -35.36929 -34.54937 -33.25460 -32.51365 -29.68983 -28.22177 -27.62355 -25.31904 -24.30113 -22.56621 -20.79133 -20.54214 -19.83378 -18.54610 -18.04552 -17.63134 -16.21309 -16.10639 -15.95455 -15.45765 -15.37509 -14.78075 -14.65544 -14.14832 -13.54853 -13.47075 -13.41143 -12.94190 -12.65029 -12.47788 -11.90836 -11.63889 -11.23450 -11.14557 -11.02110 -10.91212 -10.86998 -10.68111 -10.34463 -10.29155 -9.54733 -9.18722 -9.13077 -8.64178 -8.30162 -7.88181 -6.18511 -4.28575 1.09749 1.84862 2.10205 2.65090 3.18259 3.20556 3.21729 3.28379 3.29633 3.71024 4.20944 4.25981 4.66372 4.85142 4.89175 5.11251 5.14279 5.34647 5.47753 5.85097 5.98106 6.31579 6.57381 6.64773 6.84097 6.89683 7.03986 7.09471 7.32543 7.34247 7.54612 7.72254 7.85734 7.88564 8.07925 8.56834 8.71959 9.03262 9.39038 10.87441 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027960 B = 0.003590 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.197531 B = 7797.141665 C = 8514.299679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.280 3.720 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.711 5.711 13 C 0.698 3.302 14 O -0.561 6.561 15 N -0.667 5.667 16 C 0.337 3.663 17 C -0.224 4.224 18 C 0.051 3.949 19 C 0.572 3.428 20 O -0.492 6.492 21 O -0.504 6.504 22 N -0.237 5.237 23 N -0.379 5.379 24 C 0.097 3.903 25 H 0.092 0.908 26 H 0.017 0.983 27 H 0.026 0.974 28 H 0.266 0.734 29 H 0.387 0.613 30 H 0.404 0.596 31 H 0.191 0.809 32 H 0.414 0.586 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.629 -5.726 -16.905 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.179 3.821 3 H 0.071 0.929 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.363 5.363 13 C 0.398 3.602 14 O -0.436 6.436 15 N -0.319 5.319 16 C 0.117 3.883 17 C -0.256 4.256 18 C -0.113 4.113 19 C 0.412 3.588 20 O -0.376 6.376 21 O -0.315 6.315 22 N -0.067 5.067 23 N -0.171 5.171 24 C -0.044 4.044 25 H 0.111 0.889 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.220 0.780 30 H 0.239 0.761 31 H 0.208 0.792 32 H 0.273 0.727 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.602 -5.230 -17.372 18.717 hybrid contribution 0.231 -0.769 1.339 1.562 sum 4.833 -6.000 -16.033 17.788 Atomic orbital electron populations 1.22122 0.98295 0.99208 1.01207 1.18783 0.91013 0.93884 0.78437 0.92931 1.21166 1.32736 1.13498 0.90142 0.92024 1.24873 0.94724 0.94970 0.99049 1.69894 1.35459 1.22353 1.24069 0.86420 0.78625 0.79745 0.82112 1.20515 1.21023 1.19886 1.45871 1.68298 1.13389 1.08707 1.15921 0.78978 0.85444 0.79878 1.90860 1.55725 1.13886 1.83165 1.42254 1.69652 1.13426 1.06527 1.17644 0.98675 0.91062 0.80893 1.21626 1.13524 0.94820 0.95667 1.20666 1.05186 0.91388 0.94021 1.19295 0.73631 0.86322 0.79582 1.90964 1.41731 1.40148 1.64786 1.84638 1.80605 1.40704 1.25552 1.77813 1.22963 0.94685 1.11224 1.48722 1.53260 1.09820 1.05297 1.21926 1.01858 0.76570 1.04031 0.88906 0.96388 0.95447 0.92416 0.78012 0.76115 0.79203 0.72750 0.90241 0.88505 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.24 16 2 C 0.28 6.79 2.56 -69.08 -0.18 6.62 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -13.58 8.73 -34.44 -0.30 -13.88 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.14 11.31 55.43 0.63 -23.52 16 8 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 N -0.71 -13.63 5.07 -59.81 -0.30 -13.93 16 13 C 0.70 13.23 8.50 -86.93 -0.74 12.49 16 14 O -0.56 -12.95 13.12 5.28 0.07 -12.89 16 15 N -0.67 -9.36 5.42 -15.76 -0.09 -9.44 16 16 C 0.34 5.10 7.67 -152.58 -1.17 3.93 16 17 C -0.22 -3.95 9.41 -39.41 -0.37 -4.32 16 18 C 0.05 0.82 7.11 -82.94 -0.59 0.23 16 19 C 0.57 8.35 8.34 34.55 0.29 8.63 16 20 O -0.49 -8.45 17.69 -19.27 -0.34 -8.79 16 21 O -0.50 -5.38 13.43 -40.55 -0.54 -5.93 16 22 N -0.24 -3.46 12.61 33.32 0.42 -3.04 16 23 N -0.38 -4.75 4.04 -67.07 -0.27 -5.02 16 24 C 0.10 0.67 11.28 59.85 0.68 1.34 16 25 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.39 6.10 8.55 -40.82 -0.35 5.75 16 30 H 0.40 3.89 7.98 -40.82 -0.33 3.56 16 31 H 0.19 3.91 5.80 -52.49 -0.30 3.60 16 32 H 0.41 2.16 9.11 45.56 0.42 2.58 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.40 7.50 -51.93 -0.39 0.01 16 LS Contribution 312.90 15.07 4.72 4.72 Total: -1.00 -34.18 312.90 -5.76 -39.94 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -2.89 Total: 9.48 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: -2.13 Total: 13.45 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.39 Total: -54.95 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.82 Total: -27.60 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.18 -5.76 -39.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.647 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds