Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34130 * 125.66682 * 2 1 4 4 C 1.38198 * 107.53011 * 179.97438 * 3 2 1 5 5 C 1.47071 * 126.46092 * 179.97438 * 4 3 2 6 6 O 1.21554 * 119.99978 * 180.02562 * 5 4 3 7 7 O 1.34782 * 120.00173 * 0.02835 * 5 4 3 8 8 C 1.41871 * 107.07114 * 359.97438 * 4 3 2 9 9 N 1.39779 * 126.07613 * 180.02562 * 8 4 3 10 10 C 1.34773 * 120.00002 * 180.02562 * 9 8 4 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00097 * 179.72685 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 14 14 C 1.53004 * 109.46928 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46843 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99981 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99570 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00351 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47118 * 60.00127 * 19 17 15 21 21 H 1.48504 * 109.47036 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47374 * 300.00233 * 19 17 15 23 23 N 1.30897 * 107.83785 * 0.26227 * 8 4 3 24 24 H 1.09005 * 109.46352 * 89.99922 * 1 2 3 25 25 H 1.08996 * 109.47501 * 210.00449 * 1 2 3 26 26 H 1.09002 * 109.47009 * 330.01017 * 1 2 3 27 27 H 1.08002 * 126.23178 * 0.02562 * 3 2 1 28 28 H 0.96705 * 116.99650 * 179.97438 * 7 5 4 29 29 H 0.97000 * 119.99886 * 359.97438 * 9 8 4 30 30 H 0.97000 * 119.99736 * 0.26819 * 12 10 9 31 31 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 32 32 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 33 33 H 1.09007 * 109.46621 * 299.99773 * 14 13 12 34 34 H 1.08997 * 109.46991 * 59.99522 * 14 13 12 35 35 H 0.96996 * 120.00389 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0897 0.0000 4 6 3.5604 0.6595 0.0006 5 6 4.7592 1.5115 0.0003 6 8 5.8645 1.0056 0.0004 7 8 4.6324 2.8534 -0.0001 8 6 3.5341 -0.7589 0.0016 9 7 4.6483 -1.6029 0.0029 10 6 4.4807 -2.9402 0.0032 11 8 3.3603 -3.4125 0.0028 12 7 5.5551 -3.7540 -0.0011 13 6 5.3729 -5.2076 -0.0069 14 6 6.7408 -5.8930 -0.0115 15 6 6.5533 -7.3883 -0.0181 16 1 5.5581 -7.8078 -0.0185 17 6 7.6524 -8.2207 -0.0237 18 7 8.8643 -7.7099 -0.0237 19 14 7.4201 -10.0743 -0.0311 20 1 6.6617 -10.4732 -1.2440 21 1 8.7478 -10.7395 -0.0370 22 1 6.6662 -10.4835 1.1810 23 7 2.2808 -1.1367 -0.0042 24 1 -0.3632 0.0000 -1.0278 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5137 27 1 1.9116 2.1163 0.0004 28 1 5.4489 3.3715 0.0001 29 1 5.5421 -1.2261 0.0029 30 1 6.4489 -3.3771 -0.0005 31 1 4.8187 -5.5078 0.8824 32 1 4.8170 -5.5006 -0.8975 33 1 7.2946 -5.5927 -0.9011 34 1 7.2970 -5.6000 0.8789 35 1 9.6375 -8.2956 -0.0280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600934921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = -40.190059 kcal Electronic energy + Delta-G solvation = -21171.536672 eV Core-core repulsion = 17592.753253 eV Total energy + Delta-G solvation = -3578.783419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.75690 -39.80581 -39.52662 -36.26403 -35.34848 -34.52058 -32.94924 -32.38098 -30.74211 -29.46081 -27.16035 -24.88355 -23.73747 -22.33913 -21.18841 -20.68898 -19.91478 -18.23757 -17.86486 -17.64156 -16.63117 -16.25842 -16.24227 -15.60973 -15.40737 -15.11430 -14.51477 -14.34381 -13.99961 -13.58200 -13.52286 -13.14988 -12.96602 -12.84690 -12.24577 -11.74278 -11.16925 -11.09118 -11.08403 -10.87394 -10.72909 -10.61945 -10.25631 -9.87912 -9.53834 -9.24637 -9.19467 -8.66370 -8.42490 -8.21700 -6.05308 -4.08139 1.06980 1.92933 1.97517 2.71996 2.93509 3.13015 3.34462 3.37999 3.41704 3.69425 4.08960 4.31158 4.43894 4.61355 4.81506 4.89931 5.07334 5.14831 5.31597 5.36498 5.58062 6.23365 6.32947 6.41648 6.49820 6.66958 6.79205 6.92262 6.96086 7.51428 7.63087 7.67070 7.77021 7.93489 8.25973 8.37971 8.88479 8.98126 9.56313 11.06338 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027650 B = 0.003104 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.433479 B = 9017.397547 C =10004.057114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.354 5.354 3 C 0.145 3.855 4 C -0.312 4.312 5 C 0.565 3.435 6 O -0.529 6.529 7 O -0.517 6.517 8 C 0.383 3.617 9 N -0.648 5.648 10 C 0.690 3.310 11 O -0.553 6.553 12 N -0.730 5.730 13 C 0.140 3.860 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.277 5.277 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.194 0.806 28 H 0.413 0.587 29 H 0.425 0.575 30 H 0.397 0.603 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.291 24.328 0.128 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.130 5.130 3 C -0.011 4.011 4 C -0.327 4.327 5 C 0.411 3.589 6 O -0.419 6.419 7 O -0.329 6.329 8 C 0.123 3.877 9 N -0.303 5.303 10 C 0.390 3.610 11 O -0.426 6.426 12 N -0.384 5.384 13 C 0.018 3.982 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.106 5.106 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.211 0.789 28 H 0.272 0.728 29 H 0.265 0.735 30 H 0.230 0.770 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.093 22.306 0.123 26.933 hybrid contribution 1.948 0.453 -0.014 2.000 sum -13.146 22.759 0.109 26.283 Atomic orbital electron populations 1.22046 0.72851 1.05226 1.04184 1.48402 1.07525 1.03796 1.53304 1.23152 0.89397 0.94262 0.94267 1.18860 0.91649 0.90654 1.31577 1.19546 0.87649 0.80179 0.71540 1.90853 1.27727 1.74893 1.48429 1.84528 1.42656 1.19311 1.86424 1.18772 0.87680 0.86649 0.94641 1.42362 1.07296 1.04531 1.76157 1.16123 0.85980 0.80123 0.78795 1.90996 1.22484 1.73894 1.55222 1.45533 1.06942 1.08107 1.77793 1.21679 1.01349 0.74300 1.00906 1.19338 0.89892 0.95287 0.97988 1.21007 0.92958 0.90611 1.51446 0.92232 1.24993 0.95137 0.99136 0.95011 1.69946 0.97680 1.35374 1.50306 0.86563 0.77199 0.84938 0.78770 1.20116 1.21271 1.20111 1.78231 0.98987 1.03194 1.30205 0.89918 0.88394 0.88868 0.78937 0.72809 0.73527 0.76986 0.92495 0.92498 0.95822 0.95824 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.43 59.85 0.68 1.20 16 2 N -0.35 -3.66 3.97 -67.58 -0.27 -3.93 16 3 C 0.14 1.23 11.32 -16.56 -0.19 1.04 16 4 C -0.31 -3.73 6.14 -104.94 -0.64 -4.37 16 5 C 0.57 6.24 8.32 34.31 0.29 6.53 16 6 O -0.53 -7.24 15.99 -19.31 -0.31 -7.54 16 7 O -0.52 -3.60 13.26 -40.71 -0.54 -4.14 16 8 C 0.38 6.02 7.79 -154.46 -1.20 4.81 16 9 N -0.65 -10.63 5.42 -15.30 -0.08 -10.72 16 10 C 0.69 13.50 8.53 -86.92 -0.74 12.76 16 11 O -0.55 -12.72 15.06 5.28 0.08 -12.64 16 12 N -0.73 -13.88 5.56 -65.22 -0.36 -14.24 16 13 C 0.14 3.11 5.61 -4.04 -0.02 3.09 16 14 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 15 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 19 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 N -0.28 -4.47 10.72 31.62 0.34 -4.13 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 28 H 0.41 1.15 9.11 45.56 0.42 1.57 16 29 H 0.42 6.20 6.97 -40.82 -0.28 5.92 16 30 H 0.40 6.58 8.49 -40.82 -0.35 6.23 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 318.59 15.07 4.80 4.80 Total: -1.00 -38.27 318.59 -6.15 -44.42 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.14 Total: 5.47 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -2.38 Total: 11.78 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.36 Total: -58.82 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.77 Total: -24.33 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -38.27 -6.15 -44.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600934921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.228 kcal (2) G-P(sol) polarization free energy of solvation -38.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds