Wall clock time and date at job start Tue Mar 31 2020 05:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34130 * 125.66682 * 2 1 4 4 C 1.38198 * 107.53011 * 179.97438 * 3 2 1 5 5 C 1.47071 * 126.46092 * 179.97438 * 4 3 2 6 6 O 1.21554 * 119.99978 * 180.02562 * 5 4 3 7 7 O 1.34782 * 120.00173 * 0.02835 * 5 4 3 8 8 C 1.41871 * 107.07114 * 359.97438 * 4 3 2 9 9 N 1.39779 * 126.07613 * 180.02562 * 8 4 3 10 10 C 1.34773 * 120.00002 * 180.02562 * 9 8 4 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00097 * 179.72685 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 14 14 C 1.53004 * 109.46928 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46843 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99981 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99570 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00351 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47118 * 60.00127 * 19 17 15 21 21 H 1.48504 * 109.47036 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47374 * 300.00233 * 19 17 15 23 23 N 1.30897 * 107.83785 * 0.26227 * 8 4 3 24 24 H 1.09005 * 109.46352 * 89.99922 * 1 2 3 25 25 H 1.08996 * 109.47501 * 210.00449 * 1 2 3 26 26 H 1.09002 * 109.47009 * 330.01017 * 1 2 3 27 27 H 1.08002 * 126.23178 * 0.02562 * 3 2 1 28 28 H 0.96705 * 116.99650 * 179.97438 * 7 5 4 29 29 H 0.97000 * 119.99886 * 359.97438 * 9 8 4 30 30 H 0.97000 * 119.99736 * 0.26819 * 12 10 9 31 31 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 32 32 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 33 33 H 1.09007 * 109.46621 * 299.99773 * 14 13 12 34 34 H 1.08997 * 109.46991 * 59.99522 * 14 13 12 35 35 H 0.96996 * 120.00389 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0897 0.0000 4 6 3.5604 0.6595 0.0006 5 6 4.7592 1.5115 0.0003 6 8 5.8645 1.0056 0.0004 7 8 4.6324 2.8534 -0.0001 8 6 3.5341 -0.7589 0.0016 9 7 4.6483 -1.6029 0.0029 10 6 4.4807 -2.9402 0.0032 11 8 3.3603 -3.4125 0.0028 12 7 5.5551 -3.7540 -0.0011 13 6 5.3729 -5.2076 -0.0069 14 6 6.7408 -5.8930 -0.0115 15 6 6.5533 -7.3883 -0.0181 16 1 5.5581 -7.8078 -0.0185 17 6 7.6524 -8.2207 -0.0237 18 7 8.8643 -7.7099 -0.0237 19 14 7.4201 -10.0743 -0.0311 20 1 6.6617 -10.4732 -1.2440 21 1 8.7478 -10.7395 -0.0370 22 1 6.6662 -10.4835 1.1810 23 7 2.2808 -1.1367 -0.0042 24 1 -0.3632 0.0000 -1.0278 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5137 27 1 1.9116 2.1163 0.0004 28 1 5.4489 3.3715 0.0001 29 1 5.5421 -1.2261 0.0029 30 1 6.4489 -3.3771 -0.0005 31 1 4.8187 -5.5078 0.8824 32 1 4.8170 -5.5006 -0.8975 33 1 7.2946 -5.5927 -0.9011 34 1 7.2970 -5.6000 0.8789 35 1 9.6375 -8.2956 -0.0280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600934921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:28 Heat of formation + Delta-G solvation = -70.683476 kcal Electronic energy + Delta-G solvation = -21172.858966 eV Core-core repulsion = 17592.753253 eV Total energy + Delta-G solvation = -3580.105713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.68427 -41.01331 -40.56373 -37.12943 -36.76702 -36.00718 -34.87354 -33.43986 -31.72744 -31.27795 -27.95451 -26.73737 -24.72467 -23.56231 -22.75627 -21.91508 -21.15047 -19.45369 -18.73125 -18.62624 -18.40789 -17.57153 -17.22570 -16.60627 -16.52106 -16.47913 -16.06132 -15.81277 -15.33652 -15.15250 -14.61095 -14.27835 -13.93232 -13.78906 -13.44261 -13.23923 -12.93915 -12.53905 -12.46555 -12.29664 -12.07285 -11.92589 -11.78139 -11.61974 -11.45999 -11.17105 -10.60395 -10.26607 -10.02434 -9.46496 -8.23545 -6.34404 0.36081 0.90666 1.03086 1.42169 1.45038 1.52912 1.70705 1.93068 2.31070 2.34207 2.42142 3.09548 3.11102 3.37767 3.89383 4.18465 4.39224 4.45849 4.48524 4.48880 4.56217 4.75799 4.78158 4.83837 5.21229 5.40596 5.50031 5.57608 5.62778 5.73472 5.79691 5.91111 6.15415 6.44489 6.78313 6.95119 7.11309 7.34515 7.38029 8.88383 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027650 B = 0.003104 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.433479 B = 9017.397547 C =10004.057114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.351 5.351 3 C 0.180 3.820 4 C -0.335 4.335 5 C 0.572 3.428 6 O -0.565 6.565 7 O -0.499 6.499 8 C 0.351 3.649 9 N -0.641 5.641 10 C 0.693 3.307 11 O -0.590 6.590 12 N -0.724 5.724 13 C 0.161 3.839 14 C 0.023 3.977 15 C -0.548 4.548 16 H 0.061 0.939 17 C 0.007 3.993 18 N -0.927 5.927 19 Si 0.967 3.033 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 N -0.334 5.334 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.141 0.859 27 H 0.252 0.748 28 H 0.434 0.566 29 H 0.432 0.568 30 H 0.408 0.592 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.009 0.991 34 H 0.010 0.990 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.777 26.251 0.142 30.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.128 5.128 3 C 0.024 3.976 4 C -0.350 4.350 5 C 0.419 3.581 6 O -0.458 6.458 7 O -0.312 6.312 8 C 0.092 3.908 9 N -0.296 5.296 10 C 0.392 3.608 11 O -0.466 6.466 12 N -0.379 5.379 13 C 0.037 3.963 14 C -0.014 4.014 15 C -0.586 4.586 16 H 0.079 0.921 17 C -0.192 4.192 18 N -0.567 5.567 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 N -0.163 5.163 24 H 0.115 0.885 25 H 0.102 0.898 26 H 0.159 0.841 27 H 0.268 0.732 28 H 0.295 0.705 29 H 0.273 0.727 30 H 0.244 0.756 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.589 24.309 0.137 29.430 hybrid contribution 2.298 0.046 -0.021 2.298 sum -14.291 24.355 0.116 28.238 Atomic orbital electron populations 1.22509 0.70077 1.06914 1.05691 1.48736 1.08867 1.02870 1.52278 1.23949 0.87574 0.95758 0.90349 1.19057 0.93681 0.89141 1.33107 1.19428 0.86765 0.81219 0.70721 1.90838 1.28927 1.75809 1.50269 1.84460 1.43978 1.17269 1.85505 1.19114 0.87364 0.88171 0.96149 1.42093 1.08365 1.03398 1.75723 1.16156 0.85177 0.81117 0.78308 1.90959 1.23801 1.74936 1.56924 1.45236 1.07735 1.06975 1.77988 1.21188 0.99089 0.75945 1.00055 1.19141 0.91075 0.94708 0.96497 1.21427 0.93280 0.92157 1.51757 0.92105 1.25894 0.94734 1.04245 0.94345 1.70058 0.98488 1.37226 1.50885 0.85467 0.77464 0.78759 0.79164 1.19291 1.20553 1.19274 1.78042 0.99972 1.07125 1.31170 0.88491 0.89773 0.84116 0.73237 0.70452 0.72720 0.75593 0.93328 0.93346 0.97217 0.97207 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 11.43 127.77 1.46 2.13 16 2 N -0.35 -6.51 3.97 -367.73 -1.46 -7.97 16 3 C 0.18 2.41 11.32 84.33 0.95 3.36 16 4 C -0.33 -7.48 6.14 -20.07 -0.12 -7.61 16 5 C 0.57 11.68 8.32 70.14 0.58 12.26 16 6 O -0.57 -15.26 15.99 19.66 0.31 -14.94 16 7 O -0.50 -5.31 13.26 -56.93 -0.75 -6.06 16 8 C 0.35 11.12 7.79 133.92 1.04 12.16 16 9 N -0.64 -21.70 5.42 -320.58 -1.74 -23.43 16 10 C 0.69 28.09 8.53 179.06 1.53 29.62 16 11 O -0.59 -28.19 15.06 -4.01 -0.06 -28.25 16 12 N -0.72 -28.51 5.56 -478.52 -2.66 -31.17 16 13 C 0.16 7.39 5.61 86.38 0.48 7.88 16 14 C 0.02 1.23 5.09 29.85 0.15 1.38 16 15 C -0.55 -31.43 9.11 25.60 0.23 -31.20 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.01 0.38 5.46 84.65 0.46 0.84 16 18 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 19 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 N -0.33 -10.83 10.72 -53.89 -0.58 -11.40 16 24 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.14 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.25 0.22 8.06 -2.91 -0.02 0.20 16 28 H 0.43 1.06 9.11 -74.05 -0.67 0.39 16 29 H 0.43 13.06 6.97 -92.71 -0.65 12.41 16 30 H 0.41 14.02 8.49 -92.71 -0.79 13.24 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.29 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -86.07 318.59 1.21 -84.86 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.94 Total: 16.33 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: 6.78 Total: 30.82 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -6.15 Total: -129.28 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -0.50 Total: -49.25 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -86.07 1.21 -84.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600934921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.178 kcal (2) G-P(sol) polarization free energy of solvation -86.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds