Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40065 * 125.95267 * 2 1 4 4 C 1.31916 * 108.25336 * 179.97438 * 3 2 1 5 5 C 1.47600 * 125.96527 * 179.97438 * 4 3 2 6 6 O 1.21491 * 119.99986 * 180.02562 * 5 4 3 7 7 O 1.34738 * 119.99981 * 0.02618 * 5 4 3 8 8 C 1.41050 * 108.06490 * 359.97438 * 4 3 2 9 9 C 1.35730 * 107.78993 * 0.02562 * 8 4 3 10 10 N 1.39536 * 126.10097 * 179.97438 * 9 8 4 11 11 C 1.34780 * 120.00105 * 359.97438 * 10 9 8 12 12 O 1.21584 * 120.00078 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99724 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99722 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46916 * 179.97438 * 14 13 11 16 16 C 1.50704 * 109.46662 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00407 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99614 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00147 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46805 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47132 * 119.99551 * 20 18 16 23 23 H 1.48500 * 109.46693 * 239.99772 * 20 18 16 24 24 H 1.09000 * 109.46883 * 90.02304 * 1 2 3 25 25 H 1.08997 * 109.46897 * 210.02306 * 1 2 3 26 26 H 1.08998 * 109.47107 * 330.02965 * 1 2 3 27 27 H 0.96695 * 116.99717 * 179.97438 * 7 5 4 28 28 H 1.08001 * 126.10627 * 180.02562 * 8 4 3 29 29 H 0.97001 * 120.00024 * 180.02562 * 10 9 8 30 30 H 0.97001 * 120.00399 * 0.02562 * 13 11 10 31 31 H 1.09005 * 109.46660 * 299.99979 * 14 13 11 32 32 H 1.09000 * 109.47166 * 59.99753 * 14 13 11 33 33 H 1.08993 * 109.47263 * 299.99797 * 15 14 13 34 34 H 1.09000 * 109.47259 * 59.99988 * 15 14 13 35 35 H 0.96998 * 120.00099 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2874 1.1338 0.0000 4 6 3.5441 0.7328 0.0006 5 6 4.7331 1.6073 0.0002 6 8 5.8458 1.1197 0.0003 7 8 4.5844 2.9465 -0.0002 8 6 3.5531 -0.6777 0.0015 9 6 2.2634 -1.1006 0.0010 10 7 1.8334 -2.4281 0.0011 11 6 2.7362 -3.4289 0.0013 12 8 3.9253 -3.1750 0.0019 13 7 2.3209 -4.7111 0.0019 14 6 3.3022 -5.7989 0.0027 15 6 2.5727 -7.1438 0.0040 16 6 3.5822 -8.2627 0.0042 17 1 4.6384 -8.0372 0.0031 18 6 3.1573 -9.5744 0.0047 19 7 1.8712 -9.8490 0.0056 20 14 4.4086 -10.9615 0.0057 21 1 5.7797 -10.3912 0.0051 22 1 4.2201 -11.7973 1.2186 23 1 4.2205 -11.7985 -1.2065 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 5.3923 3.4778 0.0000 28 1 4.4297 -1.3085 0.0026 29 1 0.8848 -2.6307 0.0002 30 1 1.3722 -4.9137 0.0018 31 1 3.9272 -5.7249 -0.8872 32 1 3.9269 -5.7240 0.8928 33 1 1.9480 -7.2174 0.8941 34 1 1.9477 -7.2189 -0.8858 35 1 1.5723 -10.7718 0.0063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601006172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = -34.837729 kcal Electronic energy + Delta-G solvation = -21021.117156 eV Core-core repulsion = 17442.565831 eV Total energy + Delta-G solvation = -3578.551325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81088 -40.13454 -39.58090 -36.24772 -35.42978 -34.84892 -33.44439 -32.95298 -30.17956 -28.79644 -27.77112 -25.00225 -24.36386 -22.27482 -21.06622 -20.86839 -20.27526 -18.80303 -18.04159 -17.57197 -16.46211 -16.40341 -16.23365 -15.65630 -15.42349 -15.16545 -14.57161 -14.47243 -13.81995 -13.73423 -13.56304 -13.54732 -12.99470 -12.80459 -12.35224 -11.76914 -11.29252 -11.28297 -11.18513 -11.04548 -11.01155 -10.66333 -10.43454 -10.04970 -9.68478 -9.35915 -9.33252 -8.80662 -8.48530 -8.20018 -6.15584 -4.18452 0.94852 1.64710 1.89950 2.42578 3.01436 3.01695 3.25569 3.32692 3.33623 3.38963 4.05654 4.17730 4.40166 4.72053 4.76769 5.00623 5.12553 5.22233 5.28371 5.65928 5.75438 6.07130 6.20255 6.25803 6.38155 6.59679 6.64267 6.72951 6.88564 7.19259 7.45230 7.52212 7.73597 7.82954 7.97128 8.21005 8.56547 8.87819 9.47093 10.96070 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.002898 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.722310 B = 9659.649839 C =10562.624016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.377 5.377 3 N -0.232 5.232 4 C 0.051 3.949 5 C 0.572 3.428 6 O -0.493 6.493 7 O -0.503 6.503 8 C -0.222 4.222 9 C 0.333 3.667 10 N -0.664 5.664 11 C 0.704 3.296 12 O -0.559 6.559 13 N -0.725 5.725 14 C 0.138 3.862 15 C 0.013 3.987 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.415 0.585 28 H 0.191 0.809 29 H 0.407 0.593 30 H 0.396 0.604 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 21.354 0.045 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.168 5.168 3 N -0.062 5.062 4 C -0.112 4.112 5 C 0.412 3.588 6 O -0.377 6.377 7 O -0.314 6.314 8 C -0.254 4.254 9 C 0.113 3.887 10 N -0.315 5.315 11 C 0.403 3.597 12 O -0.434 6.434 13 N -0.378 5.378 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.080 0.920 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.274 0.726 28 H 0.207 0.793 29 H 0.243 0.757 30 H 0.230 0.770 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.450 21.913 0.045 22.580 hybrid contribution 0.319 -1.399 -0.006 1.435 sum -5.130 20.514 0.039 21.146 Atomic orbital electron populations 1.21966 0.73563 1.05019 1.03972 1.48749 1.06643 1.01948 1.59504 1.77849 1.00451 1.04847 1.23018 1.20670 0.90639 0.93024 1.06912 1.19274 0.86754 0.80436 0.72347 1.90963 1.25585 1.76029 1.45082 1.84637 1.42744 1.18461 1.85583 1.21590 0.96949 0.91918 1.14984 1.17583 0.89927 0.80008 1.01152 1.42058 1.10414 1.01502 1.77555 1.15781 0.84615 0.80688 0.78609 1.90884 1.14292 1.82148 1.56087 1.45551 1.11449 1.03479 1.77327 1.21775 0.90386 0.84970 1.01315 1.19344 0.96367 0.88843 0.97935 1.21068 0.93119 0.90453 1.51378 0.92028 1.24993 0.95368 0.99018 0.94887 1.69955 1.13611 1.19381 1.50395 0.86445 0.81607 0.81836 0.77634 1.19481 1.20917 1.20923 0.90069 0.89485 0.88348 0.72630 0.79257 0.75723 0.76990 0.92141 0.92143 0.95855 0.95860 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.28 59.85 0.68 1.20 16 2 N -0.38 -4.12 4.04 -67.08 -0.27 -4.39 16 3 N -0.23 -3.05 12.61 33.32 0.42 -2.63 16 4 C 0.05 0.74 7.11 -82.95 -0.59 0.15 16 5 C 0.57 7.53 8.34 34.55 0.29 7.82 16 6 O -0.49 -7.72 17.69 -19.26 -0.34 -8.06 16 7 O -0.50 -4.78 13.43 -40.60 -0.55 -5.33 16 8 C -0.22 -3.46 9.41 -39.41 -0.37 -3.83 16 9 C 0.33 4.36 7.67 -152.59 -1.17 3.19 16 10 N -0.66 -7.68 5.42 -15.76 -0.09 -7.77 16 11 C 0.70 11.05 8.53 -86.91 -0.74 10.31 16 12 O -0.56 -10.95 13.46 5.29 0.07 -10.88 16 13 N -0.72 -11.21 5.56 -65.22 -0.36 -11.57 16 14 C 0.14 2.71 5.61 -4.04 -0.02 2.69 16 15 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 16 C -0.52 -13.94 9.11 -34.44 -0.31 -14.26 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 20 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 0.28 7.50 -51.93 -0.39 -0.11 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.42 1.72 9.11 45.56 0.42 2.13 16 28 H 0.19 3.42 5.80 -52.49 -0.30 3.12 16 29 H 0.41 3.01 7.98 -40.82 -0.33 2.68 16 30 H 0.40 4.97 8.49 -40.82 -0.35 4.62 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 317.74 15.07 4.79 4.79 Total: -1.00 -35.42 317.74 -6.12 -41.54 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.03 Total: 4.11 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -2.48 Total: 8.94 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.44 Total: -51.00 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.81 Total: -24.26 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.42 -6.12 -41.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601006172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.705 kcal (2) G-P(sol) polarization free energy of solvation -35.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds