Wall clock time and date at job start Tue Mar 31 2020 05:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.39890 * 125.74478 * 2 1 4 4 C 1.30300 * 109.22117 * 180.27443 * 3 2 1 5 5 C 1.41492 * 108.16192 * 359.73835 * 4 3 2 6 6 C 1.46727 * 126.51449 * 179.97438 * 5 4 3 7 7 O 1.21591 * 119.99852 * 180.02562 * 6 5 4 8 8 O 1.34839 * 119.99619 * 0.02562 * 6 5 4 9 9 C 1.34770 * 125.74134 * 179.81360 * 2 1 3 10 10 N 1.38457 * 126.43293 * 0.02562 * 9 2 1 11 11 C 1.34775 * 120.00164 * 329.95819 * 10 9 2 12 12 O 1.21573 * 119.99928 * 353.82385 * 11 10 9 13 13 N 1.34773 * 119.99895 * 173.54555 * 11 10 9 14 14 C 1.46510 * 119.99710 * 180.27612 * 13 11 10 15 15 C 1.52997 * 109.46795 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.46813 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00004 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99882 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99774 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99914 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47352 * 90.00067 * 20 18 16 22 22 H 1.48500 * 109.47220 * 209.99697 * 20 18 16 23 23 H 1.48504 * 109.47350 * 329.99637 * 20 18 16 24 24 H 1.08998 * 109.47417 * 272.90983 * 1 2 3 25 25 H 1.09001 * 109.47200 * 32.91023 * 1 2 3 26 26 H 1.09004 * 109.47375 * 152.90891 * 1 2 3 27 27 H 1.07995 * 125.91839 * 179.78380 * 4 3 2 28 28 H 0.96694 * 116.99730 * 179.97438 * 8 6 5 29 29 H 0.97003 * 119.99965 * 149.96263 * 10 9 2 30 30 H 0.96994 * 120.00321 * 0.27922 * 13 11 10 31 31 H 1.08997 * 109.46932 * 299.99770 * 14 13 11 32 32 H 1.08995 * 109.46892 * 60.00121 * 14 13 11 33 33 H 1.09002 * 109.47217 * 299.99853 * 15 14 13 34 34 H 1.08995 * 109.47535 * 60.00229 * 15 14 13 35 35 H 0.97000 * 119.99788 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2821 1.1354 0.0000 4 6 3.5313 0.7648 -0.0059 5 6 3.5718 -0.6495 -0.0039 6 6 4.7755 -1.4885 -0.0093 7 8 4.6722 -2.7000 -0.0073 8 8 5.9963 -0.9159 -0.0166 9 6 2.2522 -1.0939 0.0036 10 7 1.8283 -2.4120 0.0073 11 6 0.6599 -2.7425 0.5922 12 8 0.0330 -1.9061 1.2131 13 7 0.1838 -3.9987 0.4841 14 6 -1.0893 -4.3563 1.1148 15 6 -1.3968 -5.8302 0.8427 16 6 -2.7066 -6.1979 1.4909 17 1 -3.2637 -5.4548 2.0422 18 6 -3.1938 -7.4830 1.3802 19 7 -4.3366 -7.8041 1.9463 20 14 -2.2299 -8.7684 0.4272 21 1 -1.2951 -9.4674 1.3453 22 1 -3.1700 -9.7531 -0.1659 23 1 -1.4582 -8.1066 -0.6553 24 1 -0.3634 0.0522 1.0263 25 1 -0.3634 0.8628 -0.5584 26 1 -0.3634 -0.9149 -0.4680 27 1 4.3874 1.4231 -0.0107 28 1 6.7595 -1.5096 -0.0196 29 1 2.3723 -3.0976 -0.4109 30 1 0.6840 -4.6659 -0.0113 31 1 -1.0206 -4.1924 2.1902 32 1 -1.8856 -3.7365 0.7028 33 1 -1.4653 -5.9945 -0.2327 34 1 -0.6004 -6.4497 1.2549 35 1 -4.6791 -8.7082 1.8687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601025008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:26 Heat of formation + Delta-G solvation = -33.008429 kcal Electronic energy + Delta-G solvation = -21684.711789 eV Core-core repulsion = 18106.239789 eV Total energy + Delta-G solvation = -3578.472001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.05329 -40.06944 -39.64820 -36.22251 -35.61398 -35.00288 -33.41778 -32.83496 -30.60707 -29.43442 -27.37646 -25.22997 -23.74501 -22.44252 -21.19884 -20.95622 -20.08636 -18.51767 -18.37543 -17.88303 -16.98136 -16.67395 -16.29633 -15.72381 -15.33358 -14.90227 -14.76570 -14.31035 -14.22994 -13.85966 -13.59674 -13.48429 -12.76345 -12.69146 -12.55402 -11.69676 -11.63338 -11.58815 -11.34894 -10.99689 -10.59855 -10.56602 -10.36988 -10.15351 -9.96567 -9.43493 -9.35461 -8.88887 -8.69094 -8.54833 -6.18634 -4.19828 1.09115 1.82209 1.88559 2.48727 2.85443 3.01129 3.16592 3.20374 3.28075 3.28932 4.07016 4.30935 4.36669 4.70919 4.85667 5.14235 5.28034 5.29666 5.45924 5.63116 5.73356 5.83580 6.03794 6.19425 6.32150 6.39880 6.44599 6.51523 6.74023 7.01610 7.10125 7.33496 7.56088 7.77811 7.82306 8.29208 8.35880 8.84677 9.40891 10.94168 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.003585 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.841939 B = 7809.322664 C = 8711.499844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.349 5.349 3 N -0.292 5.292 4 C 0.120 3.880 5 C -0.329 4.329 6 C 0.568 3.432 7 O -0.539 6.539 8 O -0.513 6.513 9 C 0.428 3.572 10 N -0.656 5.656 11 C 0.691 3.309 12 O -0.572 6.572 13 N -0.723 5.723 14 C 0.145 3.855 15 C -0.022 4.022 16 C -0.525 4.525 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.266 1.266 24 H 0.100 0.900 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.200 0.800 28 H 0.412 0.588 29 H 0.431 0.569 30 H 0.399 0.601 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.019 0.981 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.950 14.018 -7.252 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.132 5.132 3 N -0.111 5.111 4 C -0.069 4.069 5 C -0.346 4.346 6 C 0.415 3.585 7 O -0.431 6.431 8 O -0.324 6.324 9 C 0.196 3.804 10 N -0.310 5.310 11 C 0.392 3.608 12 O -0.449 6.449 13 N -0.376 5.376 14 C 0.023 3.977 15 C -0.060 4.060 16 C -0.564 4.564 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.534 5.534 20 Si 0.709 3.291 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.191 1.191 24 H 0.118 0.882 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.217 0.783 28 H 0.270 0.730 29 H 0.272 0.728 30 H 0.233 0.767 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.764 15.457 -6.636 23.054 hybrid contribution 1.904 -2.642 -0.820 3.359 sum 17.668 12.815 -7.456 23.065 Atomic orbital electron populations 1.22290 0.71784 1.03001 1.05229 1.48605 1.07844 1.01803 1.54909 1.77249 1.01799 1.05853 1.26235 1.23937 0.95318 0.92825 0.94849 1.18417 0.88407 0.93841 1.33890 1.19359 0.82426 0.85323 0.71399 1.90863 1.87441 1.15543 1.49209 1.84541 1.16344 1.45177 1.86367 1.17601 0.88816 0.80955 0.93054 1.42177 1.23484 1.05771 1.59548 1.16113 0.79915 0.84230 0.80591 1.91017 1.59626 1.48276 1.45988 1.45624 1.25862 1.09011 1.57115 1.21573 0.80624 0.98304 0.97156 1.19816 0.98214 0.90381 0.97617 1.20858 1.03857 0.97343 1.34319 0.90535 1.24991 0.94790 0.98343 0.95055 1.69895 1.19492 1.20039 1.43987 0.86755 0.80067 0.81550 0.80709 1.20149 1.21202 1.19105 0.88162 0.90454 0.89374 0.78334 0.72959 0.72826 0.76738 0.91532 0.91528 0.95850 0.96229 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.43 9.22 59.84 0.55 1.98 16 2 N -0.35 -4.67 3.94 -66.73 -0.26 -4.94 16 3 N -0.29 -3.70 12.47 30.88 0.39 -3.32 16 4 C 0.12 1.27 11.86 -16.96 -0.20 1.06 16 5 C -0.33 -3.95 6.15 -104.86 -0.64 -4.59 16 6 C 0.57 6.35 8.31 34.16 0.28 6.63 16 7 O -0.54 -7.18 16.26 -19.34 -0.31 -7.49 16 8 O -0.51 -3.92 13.28 -40.87 -0.54 -4.46 16 9 C 0.43 5.71 7.31 -153.44 -1.12 4.59 16 10 N -0.66 -8.38 5.12 -15.46 -0.08 -8.46 16 11 C 0.69 10.34 7.48 -86.92 -0.65 9.69 16 12 O -0.57 -9.84 11.42 5.30 0.06 -9.78 16 13 N -0.72 -10.71 5.56 -65.23 -0.36 -11.08 16 14 C 0.15 2.68 5.61 -4.04 -0.02 2.66 16 15 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 16 C -0.53 -14.10 9.66 -34.44 -0.33 -14.44 16 17 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16 20 Si 0.88 20.46 27.47 -169.99 -4.67 15.79 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 24 H 0.10 1.37 6.88 -51.93 -0.36 1.01 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 1.12 6.13 -51.93 -0.32 0.80 16 27 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.41 1.34 9.11 45.56 0.42 1.76 16 29 H 0.43 4.80 7.56 -40.82 -0.31 4.49 16 30 H 0.40 4.93 8.50 -40.82 -0.35 4.59 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 34 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 307.19 15.07 4.63 4.63 Total: -1.00 -33.37 307.19 -5.69 -39.07 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -2.96 Total: 7.03 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -2.35 Total: 8.86 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.45 Total: -53.64 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.80 Total: -21.74 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.37 -5.69 -39.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601025008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.058 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds