Wall clock time and date at job start Tue Mar 31 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 117.00077 * 2 1 4 4 C 1.38755 * 120.05301 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94011 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05511 * 359.74262 * 5 4 3 7 7 C 1.38244 * 120.11254 * 0.50994 * 6 5 4 8 8 C 1.50701 * 119.97083 * 179.76489 * 7 6 5 9 9 H 1.09002 * 109.47060 * 179.72740 * 8 7 6 10 10 C 1.53002 * 109.47419 * 299.72821 * 8 7 6 11 11 S 1.81404 * 109.47098 * 59.72790 * 8 7 6 12 12 C 1.81401 * 102.99859 * 175.00020 * 11 8 7 13 13 C 1.53001 * 109.46611 * 179.97438 * 12 11 8 14 14 H 1.08998 * 109.47167 * 60.00300 * 13 12 11 15 15 O 1.42898 * 109.47423 * 299.99637 * 13 12 11 16 16 C 1.50707 * 109.46491 * 179.97438 * 13 12 11 17 17 H 1.07999 * 120.00377 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99592 * 179.97438 * 16 13 12 19 19 N 1.31520 * 120.00108 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00162 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46995 * 59.99748 * 20 18 16 22 22 H 1.48493 * 109.47315 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46639 * 300.00182 * 20 18 16 24 24 C 1.38164 * 120.05507 * 359.49132 * 7 6 5 25 25 H 1.08998 * 109.47112 * 299.99914 * 1 2 3 26 26 H 1.09007 * 109.46798 * 59.99727 * 1 2 3 27 27 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.02764 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.96727 * 180.02562 * 5 4 3 30 30 H 1.08004 * 119.93975 * 180.27889 * 6 5 4 31 31 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 32 32 H 1.09000 * 109.46986 * 300.00096 * 10 8 7 33 33 H 1.09002 * 109.47075 * 59.99368 * 10 8 7 34 34 H 1.08995 * 109.47206 * 299.99675 * 12 11 8 35 35 H 1.08998 * 109.47109 * 60.00201 * 12 11 8 36 36 H 0.96697 * 113.99930 * 300.00704 * 15 13 12 37 37 H 0.97000 * 120.00018 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.02839 * 180.27290 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0560 2.5171 0.0007 8 6 5.5608 2.5982 0.0012 9 1 5.9789 1.5915 0.0010 10 6 6.0318 3.3462 -1.2477 11 16 6.1181 3.4842 1.4828 12 6 7.9243 3.3467 1.3852 13 6 8.5552 4.0569 2.5846 14 1 8.2048 3.5935 3.5068 15 8 8.1812 5.4360 2.5724 16 6 10.0557 3.9421 2.5038 17 1 10.5135 3.4156 1.6794 18 6 10.8441 4.5101 3.4820 19 7 10.2867 5.1516 4.4857 20 14 12.7041 4.3685 3.3817 21 1 13.1814 4.9993 2.1249 22 1 13.3165 5.0577 4.5457 23 1 13.0927 2.9353 3.3949 24 6 3.4311 1.2848 0.0001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2128 2.3204 0.0005 29 1 1.3340 4.5113 0.0019 30 1 3.7922 4.6381 0.0114 31 1 7.1202 3.4045 -1.2475 32 1 5.6969 2.8138 -2.1379 33 1 5.6136 4.3528 -1.2475 34 1 8.2096 2.2947 1.3941 35 1 8.2747 3.8105 0.4632 36 1 8.4612 5.9124 1.7789 37 1 10.8413 5.5508 5.1741 38 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652717372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:29 Heat of formation + Delta-G solvation = -74.108831 kcal Electronic energy + Delta-G solvation = -19134.483514 eV Core-core repulsion = 16068.229730 eV Total energy + Delta-G solvation = -3066.253784 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.24558 -37.87940 -35.82923 -33.89107 -32.15639 -30.83625 -29.80676 -28.94565 -27.48951 -25.28988 -23.94580 -22.65349 -21.30450 -20.59640 -17.92398 -17.13453 -16.46826 -16.13590 -15.91306 -15.44782 -14.89275 -14.64026 -14.27947 -14.09171 -13.78350 -13.70303 -13.52868 -13.05918 -12.74535 -12.48809 -12.31508 -11.91527 -11.67271 -11.36315 -11.27324 -11.15684 -11.11110 -10.90594 -10.82233 -10.65335 -10.06783 -9.46019 -9.08927 -8.78236 -8.60893 -8.28856 -8.18354 -7.04445 -6.04865 -4.25173 1.13025 1.41108 2.29697 3.10394 3.23776 3.26775 3.32547 3.34541 3.76576 4.36083 4.58087 4.67668 4.87083 4.90033 4.97504 5.02372 5.20401 5.21941 5.26572 5.34212 5.45696 5.54701 5.75746 5.81520 5.89428 5.96109 6.04821 6.17071 6.20119 6.34484 6.41140 6.58617 6.67251 6.69949 7.27153 7.63479 7.77538 8.07337 8.76306 9.35149 9.52594 10.98951 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038496 B = 0.003130 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.168431 B = 8944.085021 C = 9036.422578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.211 4.211 5 C -0.080 4.080 6 C -0.134 4.134 7 C -0.016 4.016 8 C -0.035 4.035 9 H 0.088 0.912 10 C -0.140 4.140 11 S -0.238 6.238 12 C -0.102 4.102 13 C 0.247 3.753 14 H 0.064 0.936 15 O -0.555 6.555 16 C -0.572 4.572 17 H 0.057 0.943 18 C 0.081 3.919 19 N -0.856 5.856 20 Si 0.893 3.107 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.276 1.276 24 C -0.141 4.141 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.345 0.655 37 H 0.263 0.737 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.389 -6.404 -11.743 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.230 4.230 5 C -0.099 4.099 6 C -0.154 4.154 7 C -0.017 4.017 8 C -0.164 4.164 9 H 0.106 0.894 10 C -0.199 4.199 11 S -0.007 6.007 12 C -0.251 4.251 13 C 0.188 3.812 14 H 0.081 0.919 15 O -0.357 6.357 16 C -0.612 4.612 17 H 0.075 0.925 18 C -0.126 4.126 19 N -0.491 5.491 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.161 4.161 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.188 0.812 37 H 0.073 0.927 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.144 -6.158 -10.180 21.697 hybrid contribution 1.818 -0.559 -1.443 2.387 sum -16.327 -6.718 -11.623 21.137 Atomic orbital electron populations 1.23026 0.78597 1.03752 1.01284 1.86064 1.21208 1.27064 1.88947 1.18905 0.92101 0.84089 0.97066 1.21194 0.99776 0.92470 1.09582 1.20909 0.94482 0.96934 0.97535 1.21019 0.93512 0.98583 1.02270 1.19092 0.93279 0.92557 0.96807 1.22062 0.93843 1.02456 0.97992 0.89359 1.22060 1.01688 1.00722 0.95448 1.87294 1.09265 1.72763 1.31425 1.24634 0.90245 1.04434 1.05753 1.19130 0.92124 0.79419 0.90543 0.91861 1.86610 1.80892 1.23699 1.44506 1.21509 0.91138 1.38420 1.10086 0.92522 1.25040 0.98704 0.94132 0.94763 1.70076 1.35364 1.32867 1.10771 0.86666 0.85251 0.78365 0.77679 1.20084 1.21093 1.20099 1.20243 0.91327 0.97983 1.06556 0.92665 0.92790 0.88388 0.85713 0.85690 0.85095 0.91846 0.92306 0.91201 0.90866 0.91189 0.81160 0.92743 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.67 10.50 -19.46 -0.20 -3.88 16 3 C 0.12 1.54 6.69 -39.22 -0.26 1.28 16 4 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 5 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 6 C -0.13 -1.76 8.77 -39.56 -0.35 -2.11 16 7 C -0.02 -0.22 4.78 -104.65 -0.50 -0.72 16 8 C -0.04 -0.51 3.01 -27.88 -0.08 -0.60 16 9 H 0.09 1.24 7.87 -51.92 -0.41 0.83 16 10 C -0.14 -1.79 8.92 37.16 0.33 -1.46 16 11 S -0.24 -4.45 20.39 -107.50 -2.19 -6.64 16 12 C -0.10 -2.09 5.27 37.16 0.20 -1.89 16 13 C 0.25 6.28 2.87 -27.88 -0.08 6.20 16 14 H 0.06 1.81 8.14 -51.93 -0.42 1.38 16 15 O -0.56 -14.39 12.33 -35.23 -0.43 -14.83 16 16 C -0.57 -15.50 8.76 -34.44 -0.30 -15.81 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 19 N -0.86 -25.28 12.84 55.43 0.71 -24.57 16 20 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.14 -1.88 9.61 -39.44 -0.38 -2.26 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.70 7.59 -52.48 -0.40 1.31 16 31 H 0.06 0.83 6.92 -51.93 -0.36 0.47 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.88 7.40 -51.93 -0.38 0.49 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.07 1.34 7.14 -51.92 -0.37 0.97 16 36 H 0.34 7.92 9.04 45.56 0.41 8.34 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.13 1.61 7.94 -52.49 -0.42 1.20 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -31.34 332.09 -8.13 -39.47 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.71 Total: 7.52 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -1.29 Total: -18.01 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: 0.71 Total: -24.57 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.64 Total: -18.71 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -2.19 Total: -6.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.34 -8.13 -39.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652717372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.639 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds