Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34738 * 116.99690 * 2 1 4 4 O 1.21491 * 120.00033 * 0.02562 * 3 2 1 5 5 C 1.47600 * 119.99981 * 179.97438 * 3 2 1 6 6 C 1.41050 * 125.96981 * 179.97438 * 5 3 2 7 7 C 1.35730 * 107.78993 * 180.02562 * 6 5 3 8 8 N 1.39536 * 126.10097 * 179.97438 * 7 6 5 9 9 C 1.34780 * 120.00105 * 359.97438 * 8 7 6 10 10 O 1.21584 * 120.00078 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99724 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99722 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.46944 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00237 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99681 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00240 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46924 * 60.00629 * 17 15 13 19 19 H 1.48504 * 109.47228 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47750 * 300.00556 * 17 15 13 21 21 N 1.35967 * 107.79957 * 0.02562 * 7 6 5 22 22 C 1.46502 * 125.95507 * 180.02562 * 21 7 6 23 23 N 1.31916 * 125.96527 * 0.02618 * 5 3 2 24 24 H 1.08994 * 109.47040 * 60.00286 * 1 2 3 25 25 H 1.09003 * 109.46780 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46982 * 300.00069 * 1 2 3 27 27 H 1.08001 * 126.10627 * 0.06345 * 6 5 3 28 28 H 0.97001 * 120.00024 * 180.02562 * 8 7 6 29 29 H 0.97001 * 120.00399 * 0.02562 * 11 9 8 30 30 H 1.09005 * 109.46660 * 299.99979 * 12 11 9 31 31 H 1.09000 * 109.47166 * 59.99753 * 12 11 9 32 32 H 0.97006 * 120.00330 * 180.02562 * 16 15 13 33 33 H 1.09000 * 109.46883 * 269.97462 * 22 21 7 34 34 H 1.08997 * 109.46897 * 29.97463 * 22 21 7 35 35 H 1.08998 * 109.47107 * 149.98123 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4019 2.2194 0.0005 5 6 3.5376 1.2779 0.0006 6 6 4.3051 2.4613 0.0001 7 6 5.6151 2.1059 0.0003 8 7 6.7038 2.9788 -0.0005 9 6 6.4994 4.3110 -0.0021 10 8 5.3665 4.7523 -0.0024 11 7 7.5510 5.1540 -0.0024 12 6 7.3289 6.6022 -0.0036 13 6 8.6570 7.3140 -0.0042 14 1 9.5748 6.7448 -0.0034 15 6 8.7005 8.6921 -0.0059 16 7 7.5829 9.3853 -0.0064 17 14 10.3469 9.5746 -0.0061 18 1 11.1145 9.1901 -1.2177 19 1 10.1217 11.0425 -0.0074 20 1 11.1133 9.1930 1.2072 21 7 5.6773 0.7477 0.0003 22 6 6.9013 -0.0574 0.0010 23 7 4.3672 0.2522 0.0006 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9194 3.4700 0.0003 28 1 7.6076 2.6268 -0.0006 29 1 8.4549 4.8020 -0.0018 30 1 6.7662 6.8826 -0.8940 31 1 6.7655 6.8841 0.8860 32 1 7.6135 10.3549 -0.0080 33 1 7.2052 -0.2573 -1.0265 34 1 7.6937 0.4868 0.5150 35 1 6.7156 -1.0004 0.5150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680953392.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = -21.633548 kcal Electronic energy + Delta-G solvation = -21252.109291 eV Core-core repulsion = 17674.130542 eV Total energy + Delta-G solvation = -3577.978749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.61297 -40.17296 -39.30949 -36.47511 -34.92700 -34.38523 -33.27023 -32.44722 -29.40926 -28.38182 -27.14219 -26.91024 -23.72881 -23.10190 -21.37367 -20.54031 -20.03336 -18.62762 -17.91654 -17.16069 -16.54940 -16.17585 -15.98956 -15.87955 -15.37322 -14.82612 -14.73924 -14.16579 -13.74219 -13.52943 -13.49592 -13.29928 -12.84279 -12.66818 -12.24892 -12.15075 -12.07038 -11.12403 -11.02437 -10.94617 -10.89779 -10.80049 -10.78409 -10.35412 -9.58601 -9.49010 -9.17280 -8.84820 -8.28777 -7.86041 -6.22517 -4.30533 1.10420 1.83705 2.09904 2.45451 3.08050 3.18052 3.21306 3.27051 3.28230 3.67839 4.16419 4.25126 4.64099 4.70718 4.87259 4.96993 5.05587 5.11441 5.13754 5.24947 5.36076 5.43625 5.78158 5.97697 6.20383 6.57964 6.67497 7.00291 7.23663 7.27414 7.42101 7.43612 7.67524 7.75540 7.89985 8.52167 8.71394 8.99592 9.35986 10.87400 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.003206 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.648628 B = 8731.521106 C = 9675.422269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.347 6.347 3 C 0.553 3.447 4 O -0.484 6.484 5 C 0.053 3.947 6 C -0.224 4.224 7 C 0.337 3.663 8 N -0.667 5.667 9 C 0.696 3.304 10 O -0.562 6.562 11 N -0.715 5.715 12 C 0.266 3.734 13 C -0.547 4.547 14 H 0.063 0.937 15 C 0.065 3.935 16 N -0.883 5.883 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.379 5.379 22 C 0.097 3.903 23 N -0.237 5.237 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.191 0.809 28 H 0.404 0.596 29 H 0.390 0.610 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.268 0.732 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -20.692 0.071 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.262 6.262 3 C 0.394 3.606 4 O -0.368 6.368 5 C -0.111 4.111 6 C -0.256 4.256 7 C 0.117 3.883 8 N -0.318 5.318 9 C 0.396 3.604 10 O -0.437 6.437 11 N -0.366 5.366 12 C 0.145 3.855 13 C -0.586 4.586 14 H 0.081 0.919 15 C -0.139 4.139 16 N -0.520 5.520 17 Si 0.733 3.267 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.201 1.201 21 N -0.171 5.171 22 C -0.044 4.044 23 N -0.067 5.067 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.208 0.792 28 H 0.239 0.761 29 H 0.222 0.778 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.229 -20.918 0.073 21.341 hybrid contribution 1.740 0.969 -0.007 1.992 sum -2.489 -19.949 0.066 20.104 Atomic orbital electron populations 1.23320 0.75914 1.03760 1.02833 1.86634 1.23431 1.32044 1.84139 1.19634 0.86310 0.81667 0.73013 1.90905 1.65293 1.35984 1.44582 1.20704 0.90757 0.92863 1.06780 1.21617 0.88511 1.00362 1.15119 1.17624 0.89095 0.80916 1.00691 1.42204 1.06784 1.05007 1.77802 1.15910 0.86413 0.79042 0.79071 1.90865 1.21247 1.75135 1.56450 1.45764 1.06065 1.08841 1.75977 1.19141 0.97435 0.70705 0.98190 1.21128 0.91782 0.91689 1.53956 0.91891 1.24936 0.97116 0.97246 0.94597 1.69959 1.26442 1.07265 1.48287 0.86448 0.83085 0.78543 0.78661 1.20061 1.21010 1.20066 1.48718 1.06075 1.02456 1.59822 1.21927 0.81989 0.96651 1.03807 1.77808 0.85632 1.19687 1.23540 0.91648 0.87946 0.91654 0.79231 0.76052 0.77764 0.95174 0.95168 0.92227 0.90228 0.89586 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.38 16 2 O -0.35 -4.53 10.57 -40.60 -0.43 -4.96 16 3 C 0.55 8.71 7.97 34.55 0.28 8.98 16 4 O -0.48 -8.64 16.69 -19.26 -0.32 -8.97 16 5 C 0.05 0.86 7.11 -82.95 -0.59 0.27 16 6 C -0.22 -3.99 9.41 -39.41 -0.37 -4.36 16 7 C 0.34 5.12 7.67 -152.59 -1.17 3.95 16 8 N -0.67 -9.36 5.42 -15.76 -0.09 -9.45 16 9 C 0.70 13.29 8.53 -86.91 -0.74 12.55 16 10 O -0.56 -13.09 13.46 5.29 0.07 -13.02 16 11 N -0.71 -13.86 5.55 -66.41 -0.37 -14.23 16 12 C 0.27 6.69 5.43 -5.19 -0.03 6.66 16 13 C -0.55 -14.16 9.28 -34.44 -0.32 -14.48 16 14 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 15 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.88 -25.34 13.29 55.43 0.74 -24.60 16 17 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 N -0.38 -4.77 4.04 -67.08 -0.27 -5.04 16 22 C 0.10 0.67 11.28 59.85 0.68 1.34 16 23 N -0.24 -3.51 12.61 33.32 0.42 -3.09 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.19 3.93 5.80 -52.49 -0.30 3.63 16 28 H 0.40 3.87 7.98 -40.82 -0.33 3.55 16 29 H 0.39 6.16 8.34 -40.82 -0.34 5.82 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.39 7.50 -51.93 -0.39 0.00 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 317.68 15.07 4.79 4.79 Total: -1.00 -34.55 317.68 -5.63 -40.18 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.85 Total: 5.27 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: -1.30 Total: 17.95 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.43 Total: -56.41 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.68 Total: -26.95 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.55 -5.63 -40.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680953392.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.549 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds