Wall clock time and date at job start Tue Mar 31 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.70442 * 124.59178 * 2 1 4 4 C 1.75496 * 92.44576 * 179.97438 * 3 2 1 5 5 C 1.32771 * 110.57542 * 359.73753 * 4 3 2 6 6 C 1.36004 * 124.59029 * 179.97438 * 2 1 3 7 7 C 1.47201 * 123.46273 * 359.97438 * 6 2 1 8 8 O 1.21632 * 119.99285 * 0.02562 * 7 6 2 9 9 N 1.34770 * 120.00009 * 180.02562 * 7 6 2 10 10 C 1.46496 * 119.99871 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47288 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47243 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47294 * 54.99887 * 12 11 10 14 14 C 1.53006 * 109.47104 * 175.00526 * 12 11 10 15 15 N 1.46505 * 109.47024 * 294.99928 * 12 11 10 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 12 11 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 12 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 12 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 H 1.08997 * 109.47690 * 270.00297 * 1 2 3 25 25 H 1.09002 * 109.47144 * 30.00519 * 1 2 3 26 26 H 1.09000 * 109.47293 * 149.99976 * 1 2 3 27 27 H 1.07999 * 124.71575 * 179.97438 * 4 3 2 28 28 H 1.08004 * 123.46027 * 180.22991 * 5 4 3 29 29 H 0.97004 * 120.00257 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.46967 * 60.00147 * 10 9 7 31 31 H 1.09002 * 109.47323 * 299.99763 * 10 9 7 32 32 H 1.09003 * 109.47011 * 59.99676 * 11 10 9 33 33 H 1.09002 * 109.46836 * 300.00173 * 11 10 9 34 34 H 1.08994 * 109.47567 * 59.99528 * 14 12 11 35 35 H 1.08991 * 109.47054 * 180.02562 * 14 12 11 36 36 H 1.09004 * 109.46242 * 299.99533 * 14 12 11 37 37 H 0.97000 * 119.99792 * 334.99921 * 15 12 11 38 38 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4693 0.0008 5 6 3.6943 -0.8314 0.0067 6 6 2.2791 -1.1196 0.0005 7 6 1.7290 -2.4850 0.0017 8 8 0.5246 -2.6552 0.0018 9 7 2.5597 -3.5462 0.0026 10 6 2.0121 -4.9050 0.0032 11 6 3.1594 -5.9172 0.0036 12 6 2.5876 -7.3363 0.0036 13 1 1.9053 -7.4531 -0.8383 14 6 3.7299 -8.3465 -0.1216 15 7 1.8633 -7.5709 1.2553 16 6 0.8654 -8.5073 1.3036 17 1 0.6124 -9.0732 0.4192 18 6 0.1830 -8.7337 2.4911 19 7 0.4915 -8.0444 3.5690 20 14 -1.1732 -10.0165 2.5590 21 1 -0.6145 -11.3466 2.2071 22 1 -1.7409 -10.0645 3.9303 23 1 -2.2428 -9.6578 1.5933 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 4.9537 0.8937 0.0006 28 1 4.4576 -1.5955 0.0119 29 1 3.5202 -3.4103 0.0029 30 1 1.4001 -5.0504 -0.8870 31 1 1.3994 -5.0494 0.8931 32 1 3.7719 -5.7719 0.8935 33 1 3.7718 -5.7726 -0.8865 34 1 4.4122 -8.2297 0.7203 35 1 3.3225 -9.3574 -0.1221 36 1 4.2687 -8.1719 -1.0529 37 1 2.0907 -7.0630 2.0497 38 1 0.0144 -8.2024 4.3987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753005686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:57 Heat of formation + Delta-G solvation = -8.104404 kcal Electronic energy + Delta-G solvation = -19372.086486 eV Core-core repulsion = 16340.987619 eV Total energy + Delta-G solvation = -3031.098866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84272 -37.17909 -36.39996 -34.41555 -32.29852 -31.93470 -29.49626 -28.29001 -26.93353 -24.25484 -23.54679 -22.28081 -21.45564 -20.05219 -19.09524 -17.42007 -17.18732 -16.62173 -15.59430 -15.37463 -14.80693 -14.45692 -14.15409 -13.66384 -13.57389 -13.49743 -13.34296 -12.82021 -12.74076 -12.46921 -12.21589 -12.01929 -11.71426 -11.51586 -11.23668 -11.04743 -10.88160 -10.70604 -10.60844 -10.27057 -9.98540 -9.61588 -9.53696 -9.00316 -8.88965 -8.81639 -8.54194 -6.92173 -5.71770 -3.00461 0.66909 1.30557 1.70709 1.87109 3.45425 3.48064 3.49297 3.52582 3.53302 4.50395 4.63797 4.77780 4.98324 5.14528 5.33905 5.39247 5.42546 5.56220 5.59314 5.68952 5.77379 5.81153 5.90815 6.08516 6.09319 6.18289 6.20592 6.38281 6.42469 6.52820 6.71980 6.75598 6.88940 7.08481 7.70746 7.74454 8.42484 8.46539 9.57827 10.14610 10.49265 11.50816 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.003399 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.582559 B = 8234.888079 C = 9016.186411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.138 4.138 3 S 0.167 5.833 4 C -0.237 4.237 5 C -0.104 4.104 6 C -0.174 4.174 7 C 0.573 3.427 8 O -0.533 6.533 9 N -0.722 5.722 10 C 0.123 3.877 11 C -0.132 4.132 12 C 0.175 3.825 13 H 0.049 0.951 14 C -0.163 4.163 15 N -0.723 5.723 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.286 1.286 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.167 0.833 28 H 0.148 0.852 29 H 0.395 0.605 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.383 0.617 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.971 18.889 -9.010 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.258 4.258 3 S 0.432 5.568 4 C -0.372 4.372 5 C -0.133 4.133 6 C -0.190 4.190 7 C 0.359 3.641 8 O -0.412 6.412 9 N -0.373 5.373 10 C 0.000 4.000 11 C -0.171 4.171 12 C 0.064 3.936 13 H 0.067 0.933 14 C -0.224 4.224 15 N -0.365 5.365 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.212 1.212 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.125 0.875 27 H 0.185 0.815 28 H 0.165 0.835 29 H 0.229 0.771 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.217 0.783 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.671 20.150 -9.029 23.375 hybrid contribution 0.344 -2.108 0.457 2.184 sum 8.015 18.042 -8.572 21.523 Atomic orbital electron populations 1.20664 0.86673 1.04364 1.03797 1.24543 1.01904 0.96676 1.02656 1.83014 0.95205 1.07750 1.70836 1.25358 1.02193 0.97224 1.12430 1.21233 0.94615 0.96354 1.01090 1.20256 0.92677 0.94041 1.12033 1.17529 0.86273 0.83607 0.76691 1.90759 1.14408 1.85994 1.50031 1.45971 1.09601 1.06621 1.75069 1.21470 0.96618 0.78294 1.03613 1.22063 0.97270 0.96210 1.01580 1.20148 0.92322 0.89967 0.91158 0.93288 1.22426 0.99403 1.01376 0.99148 1.42446 1.40408 1.46218 1.07477 1.19180 1.09486 1.12803 0.95525 0.91271 1.24720 1.00170 1.00064 0.95880 1.69646 1.44184 1.43667 1.00614 0.86294 0.82113 0.81363 0.76583 1.21377 1.21759 1.21247 0.90073 0.91697 0.87540 0.81504 0.83460 0.77136 0.91756 0.89615 0.91615 0.91953 0.93535 0.92730 0.94592 0.78284 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.60 36.01 0.35 -0.78 16 2 C -0.14 -1.64 6.34 -35.11 -0.22 -1.87 16 3 S 0.17 1.46 22.97 -107.50 -2.47 -1.01 16 4 C -0.24 -1.98 11.12 28.86 0.32 -1.66 16 5 C -0.10 -1.02 9.91 -39.02 -0.39 -1.40 16 6 C -0.17 -2.25 5.98 -104.63 -0.63 -2.88 16 7 C 0.57 9.15 7.79 -12.62 -0.10 9.05 16 8 O -0.53 -10.44 14.06 5.25 0.07 -10.37 16 9 N -0.72 -10.27 5.53 -61.46 -0.34 -10.61 16 10 C 0.12 2.08 5.56 -4.04 -0.02 2.06 16 11 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 12 C 0.17 3.36 2.89 -67.93 -0.20 3.16 16 13 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 14 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 15 N -0.72 -17.86 4.57 -53.42 -0.24 -18.11 16 16 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 20 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.11 1.50 5.94 -51.93 -0.31 1.19 16 27 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.15 1.09 7.10 -52.48 -0.37 0.72 16 29 H 0.39 4.29 7.02 -40.82 -0.29 4.00 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.81 7.75 -51.93 -0.40 1.41 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 38 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -32.74 333.06 -8.63 -41.36 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.46 Total: 9.95 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.91 Total: -6.23 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.14 Total: -56.46 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.47 Total: -1.01 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.74 -8.63 -41.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753005686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.258 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds