Wall clock time and date at job start Tue Mar 31 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.70442 * 124.59178 * 2 1 4 4 C 1.75496 * 92.44576 * 179.97438 * 3 2 1 5 5 C 1.32771 * 110.57542 * 359.73753 * 4 3 2 6 6 C 1.36004 * 124.59029 * 179.97438 * 2 1 3 7 7 C 1.47201 * 123.46273 * 359.97438 * 6 2 1 8 8 O 1.21632 * 119.99285 * 0.02562 * 7 6 2 9 9 N 1.34770 * 120.00009 * 180.02562 * 7 6 2 10 10 C 1.46496 * 119.99871 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47288 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47243 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47294 * 54.99887 * 12 11 10 14 14 C 1.53006 * 109.47104 * 175.00526 * 12 11 10 15 15 N 1.46505 * 109.47024 * 294.99928 * 12 11 10 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 12 11 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 12 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 12 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 H 1.08997 * 109.47690 * 270.00297 * 1 2 3 25 25 H 1.09002 * 109.47144 * 30.00519 * 1 2 3 26 26 H 1.09000 * 109.47293 * 149.99976 * 1 2 3 27 27 H 1.07999 * 124.71575 * 179.97438 * 4 3 2 28 28 H 1.08004 * 123.46027 * 180.22991 * 5 4 3 29 29 H 0.97004 * 120.00257 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.46967 * 60.00147 * 10 9 7 31 31 H 1.09002 * 109.47323 * 299.99763 * 10 9 7 32 32 H 1.09003 * 109.47011 * 59.99676 * 11 10 9 33 33 H 1.09002 * 109.46836 * 300.00173 * 11 10 9 34 34 H 1.08994 * 109.47567 * 59.99528 * 14 12 11 35 35 H 1.08991 * 109.47054 * 180.02562 * 14 12 11 36 36 H 1.09004 * 109.46242 * 299.99533 * 14 12 11 37 37 H 0.97000 * 119.99792 * 334.99921 * 15 12 11 38 38 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4693 0.0008 5 6 3.6943 -0.8314 0.0067 6 6 2.2791 -1.1196 0.0005 7 6 1.7290 -2.4850 0.0017 8 8 0.5246 -2.6552 0.0018 9 7 2.5597 -3.5462 0.0026 10 6 2.0121 -4.9050 0.0032 11 6 3.1594 -5.9172 0.0036 12 6 2.5876 -7.3363 0.0036 13 1 1.9053 -7.4531 -0.8383 14 6 3.7299 -8.3465 -0.1216 15 7 1.8633 -7.5709 1.2553 16 6 0.8654 -8.5073 1.3036 17 1 0.6124 -9.0732 0.4192 18 6 0.1830 -8.7337 2.4911 19 7 0.4915 -8.0444 3.5690 20 14 -1.1732 -10.0165 2.5590 21 1 -0.6145 -11.3466 2.2071 22 1 -1.7409 -10.0645 3.9303 23 1 -2.2428 -9.6578 1.5933 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 4.9537 0.8937 0.0006 28 1 4.4576 -1.5955 0.0119 29 1 3.5202 -3.4103 0.0029 30 1 1.4001 -5.0504 -0.8870 31 1 1.3994 -5.0494 0.8931 32 1 3.7719 -5.7719 0.8935 33 1 3.7718 -5.7726 -0.8865 34 1 4.4122 -8.2297 0.7203 35 1 3.3225 -9.3574 -0.1221 36 1 4.2687 -8.1719 -1.0529 37 1 2.0907 -7.0630 2.0497 38 1 0.0144 -8.2024 4.3987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753005686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:56 Heat of formation + Delta-G solvation = -30.384683 kcal Electronic energy + Delta-G solvation = -19373.052631 eV Core-core repulsion = 16340.987619 eV Total energy + Delta-G solvation = -3032.065012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01085 -38.36499 -37.72013 -35.90905 -34.15775 -32.83735 -31.17349 -29.84949 -27.92421 -25.89619 -25.00730 -23.42190 -22.55422 -21.50231 -20.28904 -19.23366 -18.23386 -17.59910 -16.99914 -16.73212 -16.41875 -15.73395 -15.42988 -15.32212 -14.94011 -14.52385 -14.34710 -14.21165 -14.08710 -13.60914 -13.55060 -13.24647 -13.04828 -12.79234 -12.63821 -12.55504 -12.31768 -12.23283 -12.12136 -11.97436 -11.63098 -11.59000 -10.94596 -10.78575 -10.16918 -9.71930 -9.36266 -8.97563 -7.92150 -5.19022 -0.19752 0.55162 0.97312 1.02841 1.45772 1.49050 1.54483 2.28313 2.35248 2.57521 3.41875 3.73002 3.84210 3.91789 3.99805 4.15963 4.23649 4.37112 4.41949 4.61316 4.63938 4.67238 4.76377 4.87277 4.98980 5.02620 5.05282 5.11116 5.18772 5.28566 5.31438 5.40094 5.48542 5.54101 5.62123 6.30620 6.57923 7.25477 7.36576 8.14725 8.36028 9.31259 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.003399 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.582559 B = 8234.888079 C = 9016.186411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.165 4.165 3 S 0.223 5.777 4 C -0.228 4.228 5 C -0.115 4.115 6 C -0.197 4.197 7 C 0.565 3.435 8 O -0.583 6.583 9 N -0.707 5.707 10 C 0.134 3.866 11 C -0.115 4.115 12 C 0.164 3.836 13 H 0.042 0.958 14 C -0.153 4.153 15 N -0.736 5.736 16 C -0.235 4.235 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.967 3.033 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.282 1.282 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.203 0.797 28 H 0.171 0.829 29 H 0.414 0.586 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.045 0.955 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.371 0.629 38 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.442 20.274 -10.437 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.286 4.286 3 S 0.488 5.512 4 C -0.362 4.362 5 C -0.143 4.143 6 C -0.214 4.214 7 C 0.352 3.648 8 O -0.465 6.465 9 N -0.359 5.359 10 C 0.010 3.990 11 C -0.154 4.154 12 C 0.056 3.944 13 H 0.060 0.940 14 C -0.213 4.213 15 N -0.376 5.376 16 C -0.367 4.367 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.797 3.203 21 H -0.202 1.202 22 H -0.224 1.224 23 H -0.208 1.208 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.219 0.781 28 H 0.188 0.812 29 H 0.252 0.748 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.203 0.797 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.210 21.539 -10.513 26.052 hybrid contribution -0.377 -2.410 0.811 2.571 sum 9.833 19.129 -9.702 23.595 Atomic orbital electron populations 1.20580 0.87375 1.04099 1.03344 1.24801 1.02308 0.98521 1.02948 1.82820 0.94284 1.05175 1.68884 1.25830 1.03549 0.96654 1.10192 1.21370 0.93222 0.97786 1.01918 1.20244 0.94662 0.92281 1.14258 1.18156 0.85824 0.85165 0.75626 1.90735 1.16583 1.86893 1.52289 1.45746 1.10537 1.05214 1.74413 1.21113 0.96872 0.80394 1.00586 1.21917 0.96610 0.92890 1.03947 1.20456 0.92619 0.92922 0.88443 0.93986 1.22258 0.98545 0.99198 1.01259 1.42651 1.40519 1.45475 1.08993 1.19576 1.09417 1.12388 0.95366 0.90825 1.25493 1.02970 1.02606 0.95884 1.69806 1.45681 1.45706 1.00937 0.85298 0.79511 0.79441 0.76082 1.20223 1.22369 1.20836 0.90671 0.89152 0.90641 0.78051 0.81186 0.74823 0.93049 0.94585 0.90944 0.87595 0.93596 0.94869 0.90529 0.79671 0.94286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.32 9.60 71.24 0.68 -1.63 16 2 C -0.17 -3.86 6.34 25.17 0.16 -3.70 16 3 S 0.22 3.28 22.97 -56.49 -1.30 1.99 16 4 C -0.23 -2.92 11.12 66.64 0.74 -2.18 16 5 C -0.11 -1.94 9.91 22.67 0.22 -1.71 16 6 C -0.20 -5.00 5.98 -19.87 -0.12 -5.12 16 7 C 0.56 18.58 7.79 86.60 0.67 19.25 16 8 O -0.58 -24.45 14.06 -4.13 -0.06 -24.50 16 9 N -0.71 -19.97 5.53 -466.59 -2.58 -22.55 16 10 C 0.13 4.65 5.56 86.38 0.48 5.13 16 11 C -0.12 -3.36 4.87 30.59 0.15 -3.21 16 12 C 0.16 6.19 2.89 44.99 0.13 6.32 16 13 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 14 C -0.15 -5.03 9.49 71.98 0.68 -4.35 16 15 N -0.74 -37.00 4.57 -322.93 -1.48 -38.47 16 16 C -0.24 -13.30 9.93 84.04 0.83 -12.46 16 17 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 19 N -0.97 -61.11 13.06 21.65 0.28 -60.82 16 20 Si 0.97 47.72 29.55 68.60 2.03 49.74 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 2.31 5.94 -2.39 -0.01 2.30 16 27 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 28 H 0.17 1.93 7.10 -2.91 -0.02 1.91 16 29 H 0.41 8.20 7.02 -92.71 -0.65 7.55 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.61 7.75 -2.39 -0.02 1.59 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.37 20.22 7.80 -92.71 -0.72 19.49 16 38 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -75.14 333.06 1.71 -73.44 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.30 Total: 28.95 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 5.11 Total: -7.77 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -3.78 Total: -121.85 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.06 Total: -24.50 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.74 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.30 Total: 1.99 kcal Total: -75.14 1.71 -73.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753005686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.050 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds