Wall clock time and date at job start Tue Mar 31 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86802 * 120.00092 * 2 1 4 4 H 1.48493 * 109.47172 * 270.00028 * 3 2 1 5 5 H 1.48497 * 109.46807 * 30.00268 * 3 2 1 6 6 H 1.48504 * 109.47204 * 149.99873 * 3 2 1 7 7 C 1.38815 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99985 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00377 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00528 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47246 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47188 * 60.00457 * 11 10 9 13 13 O 1.42903 * 109.47030 * 300.00129 * 11 10 9 14 14 C 1.53006 * 109.46811 * 180.02562 * 11 10 9 15 15 N 1.46500 * 109.46998 * 184.99974 * 14 11 10 16 16 C 1.34769 * 120.00237 * 180.02562 * 15 14 11 17 17 O 1.21559 * 120.00048 * 359.97438 * 16 15 14 18 18 C 1.47854 * 120.00288 * 180.02562 * 16 15 14 19 19 C 1.39593 * 120.13203 * 359.72002 * 18 16 15 20 20 C 1.37946 * 119.90591 * 179.76890 * 19 18 16 21 21 C 1.38337 * 120.17111 * 0.51007 * 20 19 18 22 22 C 1.38548 * 120.27050 * 359.74198 * 21 20 19 23 23 F 1.35099 * 119.95369 * 180.02562 * 22 21 20 24 24 C 1.38211 * 120.09284 * 0.02562 * 22 21 20 25 25 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 26 26 H 0.97010 * 119.99711 * 0.02562 * 9 7 2 27 27 H 1.09009 * 109.46918 * 60.00435 * 10 9 7 28 28 H 1.09001 * 109.47282 * 300.00804 * 10 9 7 29 29 H 0.96698 * 113.99763 * 300.00194 * 13 11 10 30 30 H 1.08993 * 109.46955 * 305.00200 * 14 11 10 31 31 H 1.09000 * 109.47050 * 65.00029 * 14 11 10 32 32 H 0.97010 * 119.99909 * 359.97438 * 15 14 11 33 33 H 1.08004 * 120.04393 * 0.02676 * 19 18 16 34 34 H 1.07999 * 119.91573 * 180.23142 * 20 19 18 35 35 H 1.08006 * 119.86360 * 179.76805 * 21 20 19 36 36 H 1.07994 * 120.08939 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0009 12 1 5.8796 -1.6190 0.8903 13 8 5.9615 -1.4429 -1.1666 14 6 6.3813 -3.5164 0.0014 15 7 7.8171 -3.2513 0.1216 16 6 8.6921 -4.2760 0.1429 17 8 8.2900 -5.4204 0.0629 18 6 10.1412 -4.0085 0.2647 19 6 10.6064 -2.6953 0.3519 20 6 11.9589 -2.4512 0.4703 21 6 12.8561 -3.5040 0.4921 22 6 12.4027 -4.8100 0.4008 23 9 13.2844 -5.8333 0.4232 24 6 11.0496 -5.0674 0.2867 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3621 -0.0004 27 1 3.8485 -3.0434 -0.8882 28 1 3.8490 -3.0416 0.8918 29 1 5.7547 -1.8925 -1.9973 30 1 6.0525 -4.1253 0.8435 31 1 6.1868 -4.0486 -0.9297 32 1 8.1381 -2.3380 0.1850 33 1 9.9080 -1.8717 0.3310 34 1 12.3187 -1.4354 0.5415 35 1 13.9143 -3.3070 0.5812 36 1 10.6962 -6.0854 0.2159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753904258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:23 Heat of formation + Delta-G solvation = -92.046433 kcal Electronic energy + Delta-G solvation = -20832.299706 eV Core-core repulsion = 17231.347664 eV Total energy + Delta-G solvation = -3600.952042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.31595 -40.50737 -38.68739 -37.72013 -34.69774 -34.20918 -31.94588 -31.49956 -31.05136 -29.37364 -26.05181 -24.14657 -23.11067 -22.24390 -21.58645 -20.70793 -18.82400 -17.77418 -17.04233 -16.71308 -16.66242 -16.21485 -16.00061 -15.98959 -15.34740 -14.90737 -14.58174 -14.35462 -13.91205 -13.80388 -13.57439 -13.30695 -12.98842 -12.54437 -12.49332 -12.39766 -12.05758 -11.80284 -11.33852 -10.90429 -10.87473 -10.37055 -10.20258 -9.82303 -9.65225 -9.59703 -9.34298 -9.21744 -8.96412 -7.29693 -5.80774 -3.17351 0.25294 0.67102 2.43243 2.78864 3.31572 3.36753 3.41205 3.44233 3.77196 4.19128 4.25398 4.44340 4.50046 4.56675 4.58700 4.63973 4.80020 5.06057 5.19366 5.38158 5.45484 5.47631 5.52900 5.62986 5.70511 5.73555 5.74086 5.78688 6.14185 6.30168 6.37233 6.49571 7.21464 7.70652 7.91468 7.94927 8.37605 9.17003 9.88786 10.08280 11.37231 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.039266 B = 0.002805 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.921839 B = 9980.168612 C =10569.536941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.105 0.895 13 O -0.557 6.557 14 C 0.089 3.911 15 N -0.714 5.714 16 C 0.555 3.445 17 O -0.534 6.534 18 C -0.102 4.102 19 C -0.096 4.096 20 C -0.096 4.096 21 C -0.131 4.131 22 C 0.092 3.908 23 F -0.136 7.136 24 C -0.097 4.097 25 H 0.260 0.740 26 H 0.366 0.634 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.377 0.623 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.404 0.596 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.230 -5.779 0.571 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.719 3.281 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.002 3.998 11 C 0.025 3.975 12 H 0.123 0.877 13 O -0.363 6.363 14 C -0.035 4.035 15 N -0.366 5.366 16 C 0.342 3.658 17 O -0.412 6.412 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.150 4.150 22 C 0.072 3.928 23 F -0.114 7.114 24 C -0.116 4.116 25 H 0.070 0.930 26 H 0.200 0.800 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.225 0.775 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.241 0.759 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 26.885 -6.287 0.960 27.627 hybrid contribution 0.616 1.021 -0.320 1.234 sum 27.500 -5.266 0.640 28.007 Atomic orbital electron populations 1.69702 1.05152 1.25960 1.57203 1.24681 0.95251 0.97353 1.01760 0.86486 0.79083 0.84685 0.77868 1.20997 1.21798 1.20294 1.19039 0.80484 0.94791 1.43563 0.89246 1.42557 1.03949 1.01978 1.91095 1.21166 0.88392 0.90354 0.99843 1.22457 0.94794 0.90706 0.89566 0.87728 1.86535 1.85990 1.47774 1.15953 1.22156 0.79115 0.98617 1.03582 1.45825 1.07110 1.09580 1.74078 1.18133 0.85557 0.85153 0.76972 1.90806 1.79693 1.21132 1.49519 1.19795 0.93345 0.93583 1.03846 1.21461 0.96421 0.95753 0.97871 1.21004 0.92406 0.99389 0.98622 1.21391 1.01585 0.90980 1.01046 1.17557 0.86872 0.84690 1.03648 1.91532 1.67888 1.58064 1.93942 1.21251 0.90675 1.01150 0.98555 0.92976 0.80020 0.94944 0.94436 0.77496 0.89903 0.90527 0.75938 0.84595 0.84103 0.84189 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.97 55.49 0.78 -28.39 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.89 22.07 27.74 -169.99 -4.71 17.35 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.31 5.30 -59.91 -0.32 -17.63 16 10 C 0.13 2.31 5.92 -4.04 -0.02 2.28 16 11 C 0.08 1.12 3.09 -26.73 -0.08 1.04 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 13 O -0.56 -7.50 13.03 -35.23 -0.46 -7.96 16 14 C 0.09 1.03 5.31 -4.04 -0.02 1.01 16 15 N -0.71 -7.33 5.45 -61.25 -0.33 -7.66 16 16 C 0.56 6.59 7.77 -12.33 -0.10 6.49 16 17 O -0.53 -8.25 16.35 5.31 0.09 -8.16 16 18 C -0.10 -0.98 5.87 -104.97 -0.62 -1.60 16 19 C -0.10 -0.67 9.54 -39.18 -0.37 -1.05 16 20 C -0.10 -0.55 10.03 -39.65 -0.40 -0.95 16 21 C -0.13 -0.86 10.02 -39.43 -0.40 -1.25 16 22 C 0.09 0.80 7.29 -39.48 -0.29 0.51 16 23 F -0.14 -1.29 17.26 2.25 0.04 -1.25 16 24 C -0.10 -0.94 9.57 -39.11 -0.37 -1.31 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.37 8.41 5.41 -40.82 -0.22 8.19 16 27 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.38 4.17 9.04 45.56 0.41 4.58 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.40 3.34 6.51 -40.82 -0.27 3.08 16 33 H 0.14 0.69 6.40 -52.48 -0.34 0.35 16 34 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 36 H 0.15 1.51 7.65 -52.49 -0.40 1.11 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -34.47 318.42 -6.41 -40.88 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -3.36 Total: 9.91 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.92 Total: -1.90 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.12 Total: -53.69 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.37 Total: -16.11 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.47 -6.41 -40.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753904258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.163 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds