Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70443 * 124.58995 * 2 1 4 4 C 1.75511 * 92.44421 * 180.02562 * 3 2 1 5 5 C 1.32772 * 110.57068 * 359.73658 * 4 3 2 6 6 C 1.36007 * 124.58906 * 180.02562 * 2 1 3 7 7 C 1.47189 * 123.46536 * 359.95179 * 6 2 1 8 8 O 1.21638 * 119.99729 * 359.97438 * 7 6 2 9 9 N 1.34771 * 120.00584 * 179.97438 * 7 6 2 10 10 C 1.46496 * 120.00530 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46482 * 35.00456 * 10 9 7 12 12 C 1.52997 * 109.47457 * 275.00472 * 10 9 7 13 13 C 1.53002 * 109.47166 * 154.99979 * 10 9 7 14 14 N 1.46505 * 109.46982 * 305.00085 * 13 10 9 15 15 C 1.46495 * 120.00101 * 269.99901 * 14 13 10 16 16 C 1.36941 * 119.99644 * 90.00171 * 14 13 10 17 17 H 1.07998 * 119.99775 * 22.33364 * 16 14 13 18 18 C 1.38808 * 119.99802 * 202.33003 * 16 14 13 19 19 N 1.31616 * 120.00007 * 11.36385 * 18 16 14 20 20 Si 1.86800 * 119.99961 * 191.35978 * 18 16 14 21 21 H 1.48503 * 109.46764 * 90.00365 * 20 18 16 22 22 H 1.48496 * 109.47316 * 210.00500 * 20 18 16 23 23 H 1.48503 * 109.47373 * 330.00502 * 20 18 16 24 24 H 1.08995 * 109.47613 * 269.96560 * 1 2 3 25 25 H 1.09008 * 109.47196 * 29.96394 * 1 2 3 26 26 H 1.08998 * 109.47279 * 149.95510 * 1 2 3 27 27 H 1.08000 * 124.71399 * 180.02562 * 4 3 2 28 28 H 1.08001 * 123.45309 * 180.24468 * 5 4 3 29 29 H 0.97003 * 119.99737 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.46756 * 299.99514 * 12 10 9 31 31 H 1.09001 * 109.46974 * 59.99286 * 12 10 9 32 32 H 1.08999 * 109.47258 * 179.97438 * 12 10 9 33 33 H 1.08995 * 109.47278 * 65.00266 * 13 10 9 34 34 H 1.09004 * 109.46973 * 185.00423 * 13 10 9 35 35 H 1.09002 * 109.47260 * 94.23216 * 15 14 13 36 36 H 1.09004 * 109.46856 * 214.23226 * 15 14 13 37 37 H 1.08995 * 109.47200 * 334.22877 * 15 14 13 38 38 H 0.97002 * 119.99853 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4031 0.0000 4 6 3.9606 0.4693 -0.0008 5 6 3.6942 -0.8314 0.0047 6 6 2.2791 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0001 8 8 0.5246 -2.6553 0.0012 9 7 2.5596 -3.5462 -0.0011 10 6 2.0121 -4.9050 -0.0002 11 1 1.0947 -4.9274 -0.5884 12 6 1.7069 -5.3309 1.4373 13 6 3.0332 -5.8668 -0.6111 14 7 3.4151 -5.3918 -1.9434 15 6 2.6627 -5.8309 -3.1212 16 6 4.4755 -4.5373 -2.0877 17 1 5.2388 -4.4904 -1.3251 18 6 4.5693 -3.7317 -3.2141 19 7 3.5428 -3.6193 -4.0301 20 14 6.1525 -2.8070 -3.5718 21 1 7.0417 -3.6529 -4.4079 22 1 5.8385 -1.5503 -4.2981 23 1 6.8359 -2.4826 -2.2939 24 1 -0.3634 -0.0006 1.0276 25 1 -0.3634 0.8904 -0.5133 26 1 -0.3634 -0.8896 -0.5145 27 1 4.9538 0.8937 -0.0006 28 1 4.4575 -1.5954 0.0092 29 1 3.5201 -3.4104 -0.0026 30 1 2.6243 -5.3085 2.0254 31 1 0.9795 -4.6457 1.8725 32 1 1.2991 -6.3417 1.4379 33 1 3.9167 -5.9114 0.0257 34 1 2.5930 -6.8607 -0.6922 35 1 1.8903 -5.0975 -3.3531 36 1 3.3398 -5.9263 -3.9700 37 1 2.1982 -6.7955 -2.9167 38 1 3.6082 -3.0560 -4.8171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310612.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = 11.531625 kcal Electronic energy + Delta-G solvation = -20895.839291 eV Core-core repulsion = 17865.591907 eV Total energy + Delta-G solvation = -3030.247384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.40436 -36.93457 -35.94481 -33.97698 -31.75714 -31.20194 -30.05968 -26.72676 -26.13710 -25.59357 -23.50198 -21.82190 -21.08455 -19.85376 -18.87108 -16.98550 -16.71300 -16.08448 -15.37422 -14.90422 -14.53427 -14.05875 -13.78998 -13.40100 -13.19496 -13.10381 -12.84455 -12.70520 -12.31698 -12.17877 -11.93707 -11.72109 -11.39248 -11.31516 -11.23409 -10.87269 -10.82026 -10.69259 -10.38023 -10.22276 -10.04633 -9.83160 -9.07325 -8.57393 -8.52971 -8.31620 -8.01895 -6.77455 -5.74033 -3.20131 1.12791 1.75909 2.14577 2.41300 3.31922 3.38213 3.41912 3.94275 4.15394 4.45282 4.97278 5.26358 5.35668 5.43799 5.52187 5.61143 5.72700 5.81110 5.88431 5.92167 6.01665 6.18394 6.22582 6.25904 6.31525 6.45350 6.52922 6.58544 6.61024 6.76796 6.92315 7.35887 7.39428 7.70074 7.80433 8.35847 8.38914 9.01620 9.20473 9.84579 10.34776 11.30201 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.008062 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.441811 B = 3472.101167 C = 4802.602715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.146 4.146 3 S 0.144 5.856 4 C -0.239 4.239 5 C -0.091 4.091 6 C -0.156 4.156 7 C 0.581 3.419 8 O -0.559 6.559 9 N -0.680 5.680 10 C 0.119 3.881 11 H 0.077 0.923 12 C -0.159 4.159 13 C 0.142 3.858 14 N -0.598 5.598 15 C 0.164 3.836 16 C -0.259 4.259 17 H 0.066 0.934 18 C 0.010 3.990 19 N -0.897 5.897 20 Si 0.894 3.106 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.279 1.279 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.164 0.836 28 H 0.150 0.850 29 H 0.403 0.597 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.028 0.972 36 H 0.044 0.956 37 H -0.005 1.005 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.384 5.409 9.624 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.266 4.266 3 S 0.409 5.591 4 C -0.374 4.374 5 C -0.120 4.120 6 C -0.172 4.172 7 C 0.367 3.633 8 O -0.441 6.441 9 N -0.328 5.328 10 C 0.011 3.989 11 H 0.095 0.905 12 C -0.218 4.218 13 C 0.013 3.987 14 N -0.320 5.320 15 C 0.020 3.980 16 C -0.388 4.388 17 H 0.083 0.917 18 C -0.189 4.189 19 N -0.541 5.541 20 Si 0.725 3.275 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.204 1.204 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.182 0.818 28 H 0.167 0.833 29 H 0.239 0.761 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.014 0.986 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.499 6.874 9.427 11.931 hybrid contribution 1.779 -0.801 -0.496 2.013 sum -0.721 6.073 8.930 10.823 Atomic orbital electron populations 1.20578 0.87082 1.04202 1.02983 1.24385 1.01483 0.96515 1.04171 1.82747 0.95815 1.08432 1.72136 1.25272 1.01682 0.97170 1.13244 1.21328 0.95027 0.96306 0.99378 1.20280 0.92563 0.94286 1.10118 1.17400 0.86069 0.83723 0.76112 1.90635 1.14706 1.86214 1.52555 1.45574 1.10093 1.05023 1.72124 1.21824 0.99512 0.82721 0.94870 0.90504 1.22156 1.01094 1.00913 0.97653 1.21192 0.95165 0.94474 0.87843 1.43873 1.34755 1.53562 0.99809 1.20789 0.95392 0.92836 0.89008 1.19047 0.98466 1.15324 1.05994 0.91676 1.24974 0.96831 0.98000 0.99126 1.70063 1.28115 1.40777 1.15105 0.86423 0.83454 0.79412 0.78255 1.21575 1.21730 1.20422 0.90783 0.92109 0.87608 0.81815 0.83259 0.76092 0.93075 0.92940 0.92296 0.93406 0.92967 0.95413 0.93744 0.98603 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 9.60 36.01 0.35 -1.03 16 2 C -0.15 -2.44 6.34 -35.11 -0.22 -2.66 16 3 S 0.14 1.97 22.97 -107.50 -2.47 -0.50 16 4 C -0.24 -3.47 11.12 28.86 0.32 -3.15 16 5 C -0.09 -1.54 9.90 -39.02 -0.39 -1.92 16 6 C -0.16 -2.92 5.98 -104.63 -0.63 -3.55 16 7 C 0.58 12.13 7.75 -12.63 -0.10 12.03 16 8 O -0.56 -12.66 13.72 5.24 0.07 -12.59 16 9 N -0.68 -13.50 4.47 -54.96 -0.25 -13.75 16 10 C 0.12 2.25 2.88 -67.93 -0.20 2.06 16 11 H 0.08 1.68 7.58 -51.93 -0.39 1.28 16 12 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 13 C 0.14 2.73 5.36 -4.04 -0.02 2.71 16 14 N -0.60 -14.22 2.82 -181.12 -0.51 -14.74 16 15 C 0.16 4.03 9.01 59.84 0.54 4.57 16 16 C -0.26 -6.55 8.02 -15.06 -0.12 -6.67 16 17 H 0.07 1.58 7.84 -52.49 -0.41 1.17 16 18 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 19 N -0.90 -25.55 10.58 55.49 0.59 -24.96 16 20 Si 0.89 20.99 29.57 -169.99 -5.03 15.97 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 26 H 0.11 1.91 5.94 -51.93 -0.31 1.60 16 27 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.15 2.43 7.10 -52.49 -0.37 2.06 16 29 H 0.40 7.87 5.94 -40.82 -0.24 7.62 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 35 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 36 H 0.04 1.17 7.19 -51.93 -0.37 0.79 16 37 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -30.15 325.86 -8.27 -38.42 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.39 Total: 6.75 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.20 Total: 0.48 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.17 Total: -53.44 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.07 Total: -12.59 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.47 Total: -0.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.15 -8.27 -38.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310612.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.953 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds