Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70443 * 124.58995 * 2 1 4 4 C 1.75511 * 92.44421 * 180.02562 * 3 2 1 5 5 C 1.32772 * 110.57068 * 359.73658 * 4 3 2 6 6 C 1.36007 * 124.58906 * 180.02562 * 2 1 3 7 7 C 1.47189 * 123.46536 * 359.95179 * 6 2 1 8 8 O 1.21638 * 119.99729 * 359.97438 * 7 6 2 9 9 N 1.34771 * 120.00584 * 179.97438 * 7 6 2 10 10 C 1.46496 * 120.00530 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46482 * 35.00456 * 10 9 7 12 12 C 1.52997 * 109.47457 * 275.00472 * 10 9 7 13 13 C 1.53002 * 109.47166 * 154.99979 * 10 9 7 14 14 N 1.46505 * 109.46982 * 305.00085 * 13 10 9 15 15 C 1.46495 * 120.00101 * 269.99901 * 14 13 10 16 16 C 1.36941 * 119.99644 * 90.00171 * 14 13 10 17 17 H 1.07998 * 119.99775 * 22.33364 * 16 14 13 18 18 C 1.38808 * 119.99802 * 202.33003 * 16 14 13 19 19 N 1.31616 * 120.00007 * 11.36385 * 18 16 14 20 20 Si 1.86800 * 119.99961 * 191.35978 * 18 16 14 21 21 H 1.48503 * 109.46764 * 90.00365 * 20 18 16 22 22 H 1.48496 * 109.47316 * 210.00500 * 20 18 16 23 23 H 1.48503 * 109.47373 * 330.00502 * 20 18 16 24 24 H 1.08995 * 109.47613 * 269.96560 * 1 2 3 25 25 H 1.09008 * 109.47196 * 29.96394 * 1 2 3 26 26 H 1.08998 * 109.47279 * 149.95510 * 1 2 3 27 27 H 1.08000 * 124.71399 * 180.02562 * 4 3 2 28 28 H 1.08001 * 123.45309 * 180.24468 * 5 4 3 29 29 H 0.97003 * 119.99737 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.46756 * 299.99514 * 12 10 9 31 31 H 1.09001 * 109.46974 * 59.99286 * 12 10 9 32 32 H 1.08999 * 109.47258 * 179.97438 * 12 10 9 33 33 H 1.08995 * 109.47278 * 65.00266 * 13 10 9 34 34 H 1.09004 * 109.46973 * 185.00423 * 13 10 9 35 35 H 1.09002 * 109.47260 * 94.23216 * 15 14 13 36 36 H 1.09004 * 109.46856 * 214.23226 * 15 14 13 37 37 H 1.08995 * 109.47200 * 334.22877 * 15 14 13 38 38 H 0.97002 * 119.99853 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4031 0.0000 4 6 3.9606 0.4693 -0.0008 5 6 3.6942 -0.8314 0.0047 6 6 2.2791 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0001 8 8 0.5246 -2.6553 0.0012 9 7 2.5596 -3.5462 -0.0011 10 6 2.0121 -4.9050 -0.0002 11 1 1.0947 -4.9274 -0.5884 12 6 1.7069 -5.3309 1.4373 13 6 3.0332 -5.8668 -0.6111 14 7 3.4151 -5.3918 -1.9434 15 6 2.6627 -5.8309 -3.1212 16 6 4.4755 -4.5373 -2.0877 17 1 5.2388 -4.4904 -1.3251 18 6 4.5693 -3.7317 -3.2141 19 7 3.5428 -3.6193 -4.0301 20 14 6.1525 -2.8070 -3.5718 21 1 7.0417 -3.6529 -4.4079 22 1 5.8385 -1.5503 -4.2981 23 1 6.8359 -2.4826 -2.2939 24 1 -0.3634 -0.0006 1.0276 25 1 -0.3634 0.8904 -0.5133 26 1 -0.3634 -0.8896 -0.5145 27 1 4.9538 0.8937 -0.0006 28 1 4.4575 -1.5954 0.0092 29 1 3.5201 -3.4104 -0.0026 30 1 2.6243 -5.3085 2.0254 31 1 0.9795 -4.6457 1.8725 32 1 1.2991 -6.3417 1.4379 33 1 3.9167 -5.9114 0.0257 34 1 2.5930 -6.8607 -0.6922 35 1 1.8903 -5.0975 -3.3531 36 1 3.3398 -5.9263 -3.9700 37 1 2.1982 -6.7955 -2.9167 38 1 3.6082 -3.0560 -4.8171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754310612.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = -6.615287 kcal Electronic energy + Delta-G solvation = -20896.626200 eV Core-core repulsion = 17865.591907 eV Total energy + Delta-G solvation = -3031.034294 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90976 -38.41039 -37.52899 -35.71483 -33.27894 -32.74539 -31.66550 -28.08475 -27.94072 -27.35559 -24.84443 -23.48376 -22.56308 -21.42544 -20.33669 -18.67487 -18.18553 -17.49739 -16.88579 -16.77732 -16.03030 -15.55242 -15.46912 -15.02117 -14.62139 -14.52696 -14.32935 -14.20828 -13.81251 -13.56508 -13.34902 -13.08368 -12.99522 -12.84806 -12.72562 -12.54830 -12.49900 -12.14626 -12.00029 -11.93275 -11.93120 -11.66145 -10.62428 -10.58477 -9.90329 -9.65652 -9.27393 -8.74596 -7.75794 -5.22970 -0.14330 0.59531 0.95344 1.09347 1.46241 1.49023 1.56240 2.43012 2.54107 2.67302 3.40554 3.73239 3.77588 3.98782 4.14523 4.23831 4.42622 4.46570 4.56410 4.64637 4.66739 4.76761 4.85115 4.91035 4.96763 5.03104 5.09377 5.18583 5.30038 5.33889 5.34342 5.42213 5.66958 5.74777 5.83375 6.36452 6.81906 7.19129 7.46037 7.91694 8.38043 9.28007 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.008062 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.441811 B = 3472.101167 C = 4802.602715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.167 4.167 3 S 0.223 5.777 4 C -0.236 4.236 5 C -0.115 4.115 6 C -0.192 4.192 7 C 0.570 3.430 8 O -0.590 6.590 9 N -0.680 5.680 10 C 0.121 3.879 11 H 0.040 0.960 12 C -0.145 4.145 13 C 0.141 3.859 14 N -0.611 5.611 15 C 0.180 3.820 16 C -0.247 4.247 17 H 0.080 0.920 18 C -0.044 4.044 19 N -0.935 5.935 20 Si 0.950 3.050 21 H -0.295 1.295 22 H -0.305 1.305 23 H -0.253 1.253 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.196 0.804 28 H 0.148 0.852 29 H 0.404 0.596 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.075 0.925 35 H -0.010 1.010 36 H 0.019 0.981 37 H 0.027 0.973 38 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 6.312 11.429 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.287 4.287 3 S 0.488 5.512 4 C -0.370 4.370 5 C -0.144 4.144 6 C -0.209 4.209 7 C 0.357 3.643 8 O -0.474 6.474 9 N -0.329 5.329 10 C 0.013 3.987 11 H 0.058 0.942 12 C -0.204 4.204 13 C 0.014 3.986 14 N -0.333 5.333 15 C 0.034 3.966 16 C -0.377 4.377 17 H 0.098 0.902 18 C -0.240 4.240 19 N -0.582 5.582 20 Si 0.779 3.221 21 H -0.222 1.222 22 H -0.233 1.233 23 H -0.177 1.177 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.213 0.787 28 H 0.166 0.834 29 H 0.240 0.760 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.008 0.992 36 H 0.038 0.962 37 H 0.046 0.954 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.966 7.756 11.286 13.728 hybrid contribution 1.268 -1.061 -1.011 1.938 sum 0.302 6.695 10.275 12.267 Atomic orbital electron populations 1.20541 0.86655 1.03757 1.03647 1.24787 1.02543 0.97977 1.03403 1.82438 0.93707 1.05302 1.69764 1.25737 1.03757 0.96640 1.10914 1.21312 0.94078 0.97491 1.01511 1.20332 0.93992 0.93606 1.12950 1.17885 0.85877 0.84965 0.75590 1.90607 1.15868 1.86883 1.54071 1.45630 1.10048 1.05300 1.71880 1.21738 0.97683 0.82539 0.96706 0.94201 1.22019 1.01758 1.01709 0.94909 1.21396 0.96116 0.95226 0.85826 1.44109 1.34538 1.53355 1.01328 1.20481 0.93918 0.93250 0.88910 1.19423 0.98769 1.14007 1.05503 0.90193 1.25640 0.99233 0.99546 0.99565 1.70268 1.30132 1.42207 1.15576 0.85510 0.80426 0.77453 0.78679 1.22229 1.23288 1.17694 0.89523 0.89557 0.91005 0.78733 0.83427 0.75959 0.91141 0.94296 0.89916 0.91361 0.90729 0.99171 0.96249 0.95433 0.95001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.66 9.60 71.24 0.68 -1.98 16 2 C -0.17 -5.45 6.34 25.17 0.16 -5.29 16 3 S 0.22 5.44 22.97 -56.49 -1.30 4.14 16 4 C -0.24 -6.19 11.12 66.64 0.74 -5.45 16 5 C -0.12 -3.77 9.90 22.67 0.22 -3.54 16 6 C -0.19 -7.23 5.98 -19.87 -0.12 -7.35 16 7 C 0.57 24.51 7.75 86.60 0.67 25.18 16 8 O -0.59 -28.00 13.72 -4.15 -0.06 -28.06 16 9 N -0.68 -27.28 4.47 -446.03 -1.99 -29.27 16 10 C 0.12 4.55 2.88 44.99 0.13 4.68 16 11 H 0.04 1.80 7.58 -2.39 -0.02 1.78 16 12 C -0.15 -4.23 9.48 71.98 0.68 -3.55 16 13 C 0.14 5.20 5.36 86.38 0.46 5.67 16 14 N -0.61 -28.83 2.82 -726.94 -2.05 -30.88 16 15 C 0.18 8.96 9.01 127.77 1.15 10.11 16 16 C -0.25 -12.33 8.02 84.03 0.67 -11.66 16 17 H 0.08 3.72 7.84 -2.91 -0.02 3.70 16 18 C -0.04 -2.38 5.13 84.86 0.44 -1.94 16 19 N -0.93 -55.05 10.58 21.65 0.23 -54.82 16 20 Si 0.95 43.05 29.57 68.60 2.03 45.08 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.31 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 24 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.07 2.71 5.94 -2.39 -0.01 2.69 16 27 H 0.20 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.15 4.70 7.10 -2.91 -0.02 4.68 16 29 H 0.40 15.69 5.94 -92.71 -0.55 15.13 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.27 8.03 -2.39 -0.02 2.26 16 34 H 0.07 2.43 7.86 -2.38 -0.02 2.41 16 35 H -0.01 -0.58 7.42 -2.39 -0.02 -0.59 16 36 H 0.02 1.02 7.19 -2.39 -0.02 1.01 16 37 H 0.03 1.16 7.84 -2.39 -0.02 1.15 16 38 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -67.66 325.86 3.27 -64.39 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.51 Total: 24.55 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.90 Total: 4.88 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -3.81 Total: -114.97 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.06 Total: -28.06 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.30 Total: 4.14 kcal Total: -67.66 3.27 -64.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310612.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.777 kcal (2) G-P(sol) polarization free energy of solvation -67.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds