Wall clock time and date at job start Tue Mar 31 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.70442 * 124.59331 * 2 1 4 4 C 1.75509 * 92.44917 * 179.97438 * 3 2 1 5 5 C 1.32769 * 110.57127 * 359.73797 * 4 3 2 6 6 C 1.36013 * 124.59207 * 179.97438 * 2 1 3 7 7 C 1.47190 * 123.46163 * 359.97438 * 6 2 1 8 8 O 1.21644 * 119.99794 * 359.97438 * 7 6 2 9 9 N 1.34770 * 120.00218 * 179.72287 * 7 6 2 10 10 C 1.46500 * 120.00298 * 180.27184 * 9 7 6 11 11 H 1.09003 * 109.46927 * 325.00275 * 10 9 7 12 12 C 1.53002 * 109.46929 * 84.99733 * 10 9 7 13 13 C 1.52993 * 109.47394 * 205.00229 * 10 9 7 14 14 N 1.46499 * 109.47422 * 55.00195 * 13 10 9 15 15 C 1.46506 * 119.99683 * 270.00364 * 14 13 10 16 16 C 1.36938 * 120.00317 * 89.99825 * 14 13 10 17 17 H 1.07997 * 119.99934 * 23.65689 * 16 14 13 18 18 C 1.38807 * 119.99993 * 203.65827 * 16 14 13 19 19 N 1.31622 * 120.00389 * 11.24896 * 18 16 14 20 20 Si 1.86797 * 119.99928 * 191.24885 * 18 16 14 21 21 H 1.48501 * 109.47468 * 90.00164 * 20 18 16 22 22 H 1.48506 * 109.47353 * 209.99930 * 20 18 16 23 23 H 1.48506 * 109.47181 * 330.00035 * 20 18 16 24 24 H 1.08997 * 109.46802 * 269.99980 * 1 2 3 25 25 H 1.08996 * 109.46874 * 29.99810 * 1 2 3 26 26 H 1.08996 * 109.47295 * 150.00139 * 1 2 3 27 27 H 1.07996 * 124.71121 * 179.97438 * 4 3 2 28 28 H 1.08000 * 123.45806 * 180.25335 * 5 4 3 29 29 H 0.96998 * 120.00068 * 0.27598 * 9 7 6 30 30 H 1.08998 * 109.46768 * 180.02562 * 12 10 9 31 31 H 1.08996 * 109.47382 * 300.00664 * 12 10 9 32 32 H 1.09003 * 109.46874 * 60.00509 * 12 10 9 33 33 H 1.09000 * 109.47302 * 175.00275 * 13 10 9 34 34 H 1.08999 * 109.47238 * 295.00026 * 13 10 9 35 35 H 1.08994 * 109.47023 * 94.59829 * 15 14 13 36 36 H 1.09003 * 109.46476 * 214.59591 * 15 14 13 37 37 H 1.09006 * 109.46843 * 334.59075 * 15 14 13 38 38 H 0.96996 * 120.00254 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9607 0.4693 0.0008 5 6 3.6944 -0.8314 0.0067 6 6 2.2792 -1.1197 0.0005 7 6 1.7291 -2.4849 0.0017 8 8 0.5246 -2.6553 0.0027 9 7 2.5597 -3.5462 -0.0035 10 6 2.0122 -4.9050 -0.0084 11 1 1.0962 -4.9297 0.5819 12 6 1.7033 -5.3252 -1.4468 13 6 3.0348 -5.8691 0.5962 14 7 3.4201 -5.3994 1.9293 15 6 4.5549 -4.4859 2.0844 16 6 2.7195 -5.8142 3.0304 17 1 2.1611 -6.7381 2.9987 18 6 2.7270 -5.0471 4.1872 19 7 3.2155 -3.8252 4.1636 20 14 2.0437 -5.7491 5.7777 21 1 3.1295 -6.4353 6.5228 22 1 1.4927 -4.6482 6.6083 23 1 0.9655 -6.7217 5.4666 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 4.9537 0.8938 0.0006 28 1 4.4576 -1.5955 0.0123 29 1 3.5202 -3.4103 -0.0040 30 1 1.2955 -6.3360 -1.4504 31 1 0.9749 -4.6383 -1.8775 32 1 2.6193 -5.3005 -2.0372 33 1 2.5949 -6.8633 0.6744 34 1 3.9166 -5.9113 -0.0431 35 1 4.1935 -3.4578 2.1047 36 1 5.0743 -4.7070 3.0169 37 1 5.2411 -4.6136 1.2472 38 1 3.2204 -3.2890 4.9719 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:09 Heat of formation + Delta-G solvation = 12.302641 kcal Electronic energy + Delta-G solvation = -20691.809503 eV Core-core repulsion = 17661.595552 eV Total energy + Delta-G solvation = -3030.213951 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.50695 -37.00230 -36.00586 -34.01295 -31.79882 -31.16086 -30.20138 -26.81646 -26.15852 -25.56297 -23.58926 -21.88894 -21.04604 -20.02836 -18.92465 -17.06394 -16.78568 -16.16959 -15.39199 -14.86216 -14.64758 -14.12868 -13.76718 -13.38004 -13.31169 -13.11748 -13.01149 -12.78464 -12.39737 -12.11396 -11.95253 -11.82574 -11.41132 -11.37811 -11.05442 -10.89978 -10.82234 -10.76049 -10.52083 -10.18590 -9.93543 -9.83373 -9.15136 -8.62625 -8.56097 -8.39105 -8.13206 -6.71953 -5.70047 -3.16516 1.04225 1.66845 2.05679 2.30140 3.40290 3.46849 3.48133 3.85534 4.03269 4.52932 4.87610 5.15639 5.32679 5.39458 5.51528 5.52999 5.72451 5.73242 5.85543 5.88320 6.02951 6.11891 6.14356 6.16685 6.29235 6.45085 6.47215 6.50767 6.58149 6.66563 6.93172 7.25432 7.33686 7.68471 7.82816 8.21676 8.41725 8.90538 9.25364 9.87724 10.36065 11.34904 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.005891 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.043775 B = 4751.686416 C = 5363.635028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.143 4.143 3 S 0.151 5.849 4 C -0.237 4.237 5 C -0.095 4.095 6 C -0.161 4.161 7 C 0.582 3.418 8 O -0.550 6.550 9 N -0.691 5.691 10 C 0.118 3.882 11 H 0.086 0.914 12 C -0.159 4.159 13 C 0.142 3.858 14 N -0.596 5.596 15 C 0.161 3.839 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.006 3.994 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.280 1.280 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.166 0.834 28 H 0.147 0.853 29 H 0.394 0.606 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.033 0.967 36 H 0.042 0.958 37 H -0.007 1.007 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 7.755 -11.326 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.263 4.263 3 S 0.415 5.585 4 C -0.372 4.372 5 C -0.124 4.124 6 C -0.177 4.177 7 C 0.368 3.632 8 O -0.430 6.430 9 N -0.339 5.339 10 C 0.010 3.990 11 H 0.104 0.896 12 C -0.218 4.218 13 C 0.014 3.986 14 N -0.319 5.319 15 C 0.016 3.984 16 C -0.386 4.386 17 H 0.085 0.915 18 C -0.193 4.193 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.205 1.205 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.123 0.877 27 H 0.183 0.817 28 H 0.164 0.836 29 H 0.228 0.772 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.012 0.988 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.440 9.254 -11.158 14.503 hybrid contribution 0.539 -1.663 1.149 2.091 sum 0.979 7.591 -10.010 12.601 Atomic orbital electron populations 1.20597 0.87015 1.03845 1.03562 1.24417 1.01597 0.96563 1.03682 1.82808 0.95640 1.08232 1.71784 1.25273 1.01812 0.97135 1.12977 1.21241 0.94811 0.96262 1.00072 1.20285 0.92612 0.94269 1.10557 1.17398 0.86159 0.83602 0.76025 1.90662 1.14621 1.86110 1.51657 1.45632 1.09404 1.05670 1.73218 1.21868 1.00292 0.81988 0.94863 0.89589 1.22154 1.00959 1.01133 0.97522 1.21200 0.94658 0.95599 0.87127 1.43869 1.32580 1.54789 1.00631 1.20863 0.87153 0.94135 0.96243 1.19162 1.26617 1.02520 0.90275 0.91452 1.25025 1.00140 0.95112 0.99035 1.70037 1.49951 1.07669 1.27087 0.86277 0.78656 0.77918 0.83800 1.21587 1.21836 1.20507 0.90362 0.92112 0.87746 0.81700 0.83579 0.77166 0.92118 0.92969 0.93257 0.92289 0.94095 0.94888 0.93908 0.98830 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.60 36.00 0.35 -1.01 16 2 C -0.14 -2.26 6.34 -35.11 -0.22 -2.48 16 3 S 0.15 1.88 22.97 -107.50 -2.47 -0.59 16 4 C -0.24 -3.01 11.12 28.86 0.32 -2.69 16 5 C -0.09 -1.41 9.91 -39.02 -0.39 -1.80 16 6 C -0.16 -2.83 5.98 -104.63 -0.63 -3.45 16 7 C 0.58 11.78 7.75 -12.63 -0.10 11.68 16 8 O -0.55 -12.41 13.72 5.24 0.07 -12.34 16 9 N -0.69 -13.10 4.39 -54.96 -0.24 -13.34 16 10 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 11 H 0.09 1.98 7.58 -51.93 -0.39 1.59 16 12 C -0.16 -2.44 9.48 37.16 0.35 -2.09 16 13 C 0.14 2.78 5.33 -4.05 -0.02 2.76 16 14 N -0.60 -14.40 2.78 -181.12 -0.50 -14.91 16 15 C 0.16 3.74 7.60 59.85 0.46 4.20 16 16 C -0.26 -6.98 9.66 -15.06 -0.15 -7.13 16 17 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 18 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 19 N -0.90 -26.23 10.66 55.49 0.59 -25.64 16 20 Si 0.90 22.28 29.57 -169.99 -5.03 17.25 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.10 1.75 5.94 -51.93 -0.31 1.44 16 27 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.15 1.98 7.10 -52.49 -0.37 1.60 16 29 H 0.39 6.89 5.72 -40.82 -0.23 6.66 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.12 8.03 -51.93 -0.42 0.71 16 34 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 35 H 0.03 0.82 6.90 -51.93 -0.36 0.46 16 36 H 0.04 1.10 7.30 -51.93 -0.38 0.72 16 37 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -31.69 325.39 -8.34 -40.04 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.36 Total: 4.52 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.31 Total: 0.10 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.15 Total: -53.89 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.47 Total: -0.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.69 -8.34 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.342 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds