Wall clock time and date at job start Tue Mar 31 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.70442 * 124.59331 * 2 1 4 4 C 1.75509 * 92.44917 * 179.97438 * 3 2 1 5 5 C 1.32769 * 110.57127 * 359.73797 * 4 3 2 6 6 C 1.36013 * 124.59207 * 179.97438 * 2 1 3 7 7 C 1.47190 * 123.46163 * 359.97438 * 6 2 1 8 8 O 1.21644 * 119.99794 * 359.97438 * 7 6 2 9 9 N 1.34770 * 120.00218 * 179.72287 * 7 6 2 10 10 C 1.46500 * 120.00298 * 180.27184 * 9 7 6 11 11 H 1.09003 * 109.46927 * 325.00275 * 10 9 7 12 12 C 1.53002 * 109.46929 * 84.99733 * 10 9 7 13 13 C 1.52993 * 109.47394 * 205.00229 * 10 9 7 14 14 N 1.46499 * 109.47422 * 55.00195 * 13 10 9 15 15 C 1.46506 * 119.99683 * 270.00364 * 14 13 10 16 16 C 1.36938 * 120.00317 * 89.99825 * 14 13 10 17 17 H 1.07997 * 119.99934 * 23.65689 * 16 14 13 18 18 C 1.38807 * 119.99993 * 203.65827 * 16 14 13 19 19 N 1.31622 * 120.00389 * 11.24896 * 18 16 14 20 20 Si 1.86797 * 119.99928 * 191.24885 * 18 16 14 21 21 H 1.48501 * 109.47468 * 90.00164 * 20 18 16 22 22 H 1.48506 * 109.47353 * 209.99930 * 20 18 16 23 23 H 1.48506 * 109.47181 * 330.00035 * 20 18 16 24 24 H 1.08997 * 109.46802 * 269.99980 * 1 2 3 25 25 H 1.08996 * 109.46874 * 29.99810 * 1 2 3 26 26 H 1.08996 * 109.47295 * 150.00139 * 1 2 3 27 27 H 1.07996 * 124.71121 * 179.97438 * 4 3 2 28 28 H 1.08000 * 123.45806 * 180.25335 * 5 4 3 29 29 H 0.96998 * 120.00068 * 0.27598 * 9 7 6 30 30 H 1.08998 * 109.46768 * 180.02562 * 12 10 9 31 31 H 1.08996 * 109.47382 * 300.00664 * 12 10 9 32 32 H 1.09003 * 109.46874 * 60.00509 * 12 10 9 33 33 H 1.09000 * 109.47302 * 175.00275 * 13 10 9 34 34 H 1.08999 * 109.47238 * 295.00026 * 13 10 9 35 35 H 1.08994 * 109.47023 * 94.59829 * 15 14 13 36 36 H 1.09003 * 109.46476 * 214.59591 * 15 14 13 37 37 H 1.09006 * 109.46843 * 334.59075 * 15 14 13 38 38 H 0.96996 * 120.00254 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9607 0.4693 0.0008 5 6 3.6944 -0.8314 0.0067 6 6 2.2792 -1.1197 0.0005 7 6 1.7291 -2.4849 0.0017 8 8 0.5246 -2.6553 0.0027 9 7 2.5597 -3.5462 -0.0035 10 6 2.0122 -4.9050 -0.0084 11 1 1.0962 -4.9297 0.5819 12 6 1.7033 -5.3252 -1.4468 13 6 3.0348 -5.8691 0.5962 14 7 3.4201 -5.3994 1.9293 15 6 4.5549 -4.4859 2.0844 16 6 2.7195 -5.8142 3.0304 17 1 2.1611 -6.7381 2.9987 18 6 2.7270 -5.0471 4.1872 19 7 3.2155 -3.8252 4.1636 20 14 2.0437 -5.7491 5.7777 21 1 3.1295 -6.4353 6.5228 22 1 1.4927 -4.6482 6.6083 23 1 0.9655 -6.7217 5.4666 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 4.9537 0.8938 0.0006 28 1 4.4576 -1.5955 0.0123 29 1 3.5202 -3.4103 -0.0040 30 1 1.2955 -6.3360 -1.4504 31 1 0.9749 -4.6383 -1.8775 32 1 2.6193 -5.3005 -2.0372 33 1 2.5949 -6.8633 0.6744 34 1 3.9166 -5.9113 -0.0431 35 1 4.1935 -3.4578 2.1047 36 1 5.0743 -4.7070 3.0169 37 1 5.2411 -4.6136 1.2472 38 1 3.2204 -3.2890 4.9719 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754310614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:09 Heat of formation + Delta-G solvation = -7.325133 kcal Electronic energy + Delta-G solvation = -20692.660627 eV Core-core repulsion = 17661.595552 eV Total energy + Delta-G solvation = -3031.065075 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96347 -38.42392 -37.54882 -35.76817 -33.23499 -32.74399 -31.81811 -28.09981 -27.89773 -27.38907 -24.87434 -23.48828 -22.49779 -21.59383 -20.31059 -18.77605 -18.21294 -17.52138 -16.90940 -16.76249 -16.10227 -15.58639 -15.43183 -15.09318 -14.67350 -14.48132 -14.39299 -14.25388 -13.72982 -13.56818 -13.39295 -13.09854 -13.01206 -12.82970 -12.65526 -12.54439 -12.51926 -12.29058 -12.04918 -11.97796 -11.82696 -11.69392 -10.68629 -10.60121 -9.96699 -9.67063 -9.28630 -8.70564 -7.80992 -5.27648 -0.14244 0.60090 0.97613 1.10016 1.42973 1.44068 1.51708 2.39787 2.50935 2.60450 3.32739 3.72213 3.77741 3.95013 4.15152 4.24092 4.41865 4.44945 4.54735 4.62716 4.65263 4.77190 4.83821 4.90533 4.97895 5.01673 5.09463 5.18144 5.29854 5.34331 5.36873 5.40002 5.65892 5.75999 5.81424 6.35319 6.73362 7.18842 7.41083 7.90843 8.31717 9.20920 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.005891 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.043775 B = 4751.686416 C = 5363.635028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.168 4.168 3 S 0.223 5.777 4 C -0.229 4.229 5 C -0.116 4.116 6 C -0.194 4.194 7 C 0.570 3.430 8 O -0.588 6.588 9 N -0.687 5.687 10 C 0.122 3.878 11 H 0.036 0.964 12 C -0.145 4.145 13 C 0.142 3.858 14 N -0.611 5.611 15 C 0.174 3.826 16 C -0.259 4.259 17 H 0.067 0.933 18 C -0.050 4.050 19 N -0.928 5.928 20 Si 0.959 3.041 21 H -0.283 1.283 22 H -0.301 1.301 23 H -0.273 1.273 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.201 0.799 28 H 0.154 0.846 29 H 0.401 0.599 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.013 0.987 36 H 0.010 0.990 37 H 0.036 0.964 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 8.432 -12.550 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.289 4.289 3 S 0.488 5.512 4 C -0.363 4.363 5 C -0.144 4.144 6 C -0.211 4.211 7 C 0.357 3.643 8 O -0.471 6.471 9 N -0.336 5.336 10 C 0.015 3.985 11 H 0.055 0.945 12 C -0.203 4.203 13 C 0.015 3.985 14 N -0.333 5.333 15 C 0.029 3.971 16 C -0.390 4.390 17 H 0.084 0.916 18 C -0.245 4.245 19 N -0.574 5.574 20 Si 0.788 3.212 21 H -0.210 1.210 22 H -0.228 1.228 23 H -0.198 1.198 24 H 0.086 0.914 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.218 0.782 28 H 0.172 0.828 29 H 0.237 0.763 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.054 0.946 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.799 9.905 -12.414 15.983 hybrid contribution 0.127 -1.826 1.467 2.346 sum 1.927 8.078 -10.947 13.741 Atomic orbital electron populations 1.20538 0.87046 1.04241 1.02968 1.24774 1.02428 0.98252 1.03432 1.82521 0.93958 1.05202 1.69487 1.25761 1.03678 0.96492 1.10405 1.21285 0.93626 0.97640 1.01863 1.20339 0.94378 0.93193 1.13195 1.17964 0.85905 0.85029 0.75374 1.90630 1.16129 1.86885 1.53488 1.45625 1.09719 1.05464 1.72805 1.21694 0.98008 0.82274 0.96546 0.94513 1.22014 1.01927 1.01582 0.94818 1.21380 0.96099 0.95524 0.85481 1.44074 1.32725 1.54757 1.01745 1.20640 0.87271 0.92842 0.96335 1.19460 1.25806 1.02285 0.91451 0.91556 1.25694 1.01401 0.95630 1.01789 1.70199 1.51613 1.08595 1.27039 0.85389 0.78224 0.77008 0.80563 1.20962 1.22827 1.19810 0.91392 0.88843 0.90274 0.78242 0.82826 0.76272 0.90329 0.94302 0.90640 0.91661 0.90589 0.96918 0.97074 0.94588 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.70 9.60 71.24 0.68 -2.01 16 2 C -0.17 -5.27 6.34 25.17 0.16 -5.11 16 3 S 0.22 4.97 22.97 -56.49 -1.30 3.67 16 4 C -0.23 -5.14 11.12 66.64 0.74 -4.40 16 5 C -0.12 -3.31 9.91 22.67 0.22 -3.08 16 6 C -0.19 -6.87 5.98 -19.87 -0.12 -6.99 16 7 C 0.57 23.86 7.75 86.60 0.67 24.53 16 8 O -0.59 -28.05 13.72 -4.17 -0.06 -28.11 16 9 N -0.69 -26.28 4.39 -446.02 -1.96 -28.24 16 10 C 0.12 4.68 2.88 44.99 0.13 4.81 16 11 H 0.04 1.77 7.58 -2.39 -0.02 1.75 16 12 C -0.14 -4.26 9.48 71.98 0.68 -3.57 16 13 C 0.14 5.34 5.33 86.38 0.46 5.80 16 14 N -0.61 -29.26 2.78 -726.94 -2.02 -31.28 16 15 C 0.17 8.01 7.60 127.77 0.97 8.98 16 16 C -0.26 -14.25 9.66 84.03 0.81 -13.44 16 17 H 0.07 3.58 7.85 -2.91 -0.02 3.56 16 18 C -0.05 -2.82 5.13 84.86 0.44 -2.39 16 19 N -0.93 -55.18 10.66 21.65 0.23 -54.94 16 20 Si 0.96 46.53 29.57 68.60 2.03 48.56 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 22 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 23 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.08 2.79 5.94 -2.39 -0.01 2.78 16 27 H 0.20 3.01 8.06 -2.91 -0.02 2.98 16 28 H 0.15 3.98 7.10 -2.91 -0.02 3.96 16 29 H 0.40 13.81 5.72 -92.71 -0.53 13.28 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 2.38 8.03 -2.39 -0.02 2.36 16 34 H 0.08 2.35 7.86 -2.39 -0.02 2.34 16 35 H 0.01 0.63 6.90 -2.39 -0.02 0.62 16 36 H 0.01 0.55 7.30 -2.39 -0.02 0.53 16 37 H 0.04 1.33 7.84 -2.38 -0.02 1.31 16 38 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -71.30 325.39 3.31 -67.99 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.53 Total: 19.23 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.85 Total: 3.12 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -3.75 Total: -114.47 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.06 Total: -28.11 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -1.30 Total: 3.67 kcal Total: -71.30 3.31 -67.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.665 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds