Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46890 * 2 1 4 4 N 1.46500 * 109.47292 * 119.99883 * 2 1 3 5 5 C 1.34781 * 120.00006 * 154.99967 * 4 2 1 6 6 S 1.71204 * 119.99755 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99568 * 180.02562 * 5 4 2 8 8 C 1.46493 * 120.00646 * 359.97438 * 7 5 4 9 9 C 1.50695 * 109.47443 * 270.00265 * 8 7 5 10 10 H 1.08001 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00480 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99528 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00487 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46798 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47215 * 119.99681 * 13 11 9 16 16 H 1.48494 * 109.47431 * 240.00047 * 13 11 9 17 17 C 1.46505 * 119.99455 * 180.02562 * 7 5 4 18 18 C 1.50703 * 109.47064 * 90.00114 * 17 7 5 19 19 C 1.34515 * 125.79060 * 89.99944 * 18 17 7 20 20 C 1.41380 * 106.83832 * 179.97438 * 19 18 17 21 21 C 1.34506 * 106.84493 * 359.97438 * 20 19 18 22 22 O 1.34306 * 125.78568 * 269.69282 * 18 17 7 23 23 H 1.08996 * 109.47367 * 299.99895 * 1 2 3 24 24 H 1.09000 * 109.47425 * 60.00160 * 1 2 3 25 25 H 1.09009 * 109.46881 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47367 * 240.00105 * 2 1 3 27 27 H 1.09006 * 109.47118 * 59.99898 * 3 2 1 28 28 H 1.09000 * 109.47397 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47859 * 300.00142 * 3 2 1 30 30 H 0.97002 * 120.00168 * 335.00507 * 4 2 1 31 31 H 1.09006 * 109.46911 * 30.00087 * 8 7 5 32 32 H 1.08996 * 109.47170 * 149.99599 * 8 7 5 33 33 H 0.97003 * 119.99687 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.47068 * 210.00083 * 17 7 5 35 35 H 1.09001 * 109.47372 * 330.00170 * 17 7 5 36 36 H 1.07996 * 126.58016 * 0.03378 * 19 18 17 37 37 H 1.08006 * 126.57610 * 179.97438 * 20 19 18 38 38 H 1.08005 * 125.79499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2404 -1.2591 1.1944 6 16 4.2221 -1.1737 -0.2056 7 7 3.6894 -1.8949 2.2946 8 6 2.8496 -1.9675 3.4928 9 6 3.1280 -0.7774 4.3744 10 1 3.8580 -0.0409 4.0726 11 6 2.4510 -0.6289 5.5662 12 7 1.5618 -1.5256 5.9335 13 14 2.7967 0.8459 6.6594 14 1 3.8314 1.7010 6.0242 15 1 1.5493 1.6310 6.8405 16 1 3.2839 0.3784 7.9820 17 6 5.0179 -2.5124 2.2928 18 6 6.0389 -1.5089 2.7636 19 6 6.4205 -1.3139 4.0387 20 6 7.3906 -0.2855 4.0232 21 6 7.5443 0.0860 2.7396 22 8 6.7265 -0.6616 1.9805 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6765 1.9563 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.4622 -0.7387 1.9895 31 1 1.7993 -1.9655 3.2009 32 1 3.0733 -2.8841 4.0383 33 1 1.0852 -1.4209 6.7718 34 1 5.0194 -3.3732 2.9615 35 1 5.2665 -2.8368 1.2823 36 1 6.0564 -1.8422 4.9074 37 1 7.9088 0.1233 4.8780 38 1 8.2145 0.8527 2.3798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007640123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = 28.141667 kcal Electronic energy + Delta-G solvation = -20778.132365 eV Core-core repulsion = 17748.605246 eV Total energy + Delta-G solvation = -3029.527119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.90812 -38.91207 -36.34255 -33.08030 -32.45411 -31.76017 -29.75871 -28.04270 -27.03408 -25.45347 -24.00790 -21.33842 -21.09839 -20.91353 -19.84547 -17.36489 -17.14752 -17.00879 -16.32980 -15.33001 -14.81311 -14.74934 -14.38820 -14.14258 -13.75329 -13.31770 -12.91057 -12.54721 -12.28156 -12.17293 -12.13601 -12.09695 -11.82787 -11.56844 -11.31165 -11.25133 -10.98323 -10.84434 -10.67159 -10.57234 -10.14575 -9.84476 -9.26133 -8.79538 -8.29562 -7.90763 -7.10531 -6.74721 -6.39329 -4.47932 2.08043 2.33343 2.71590 3.09408 3.11070 3.19589 3.26478 3.48115 3.63579 4.05814 4.22218 4.94158 5.05771 5.21806 5.25335 5.42769 5.47341 5.59246 5.74698 5.77261 5.87612 5.97334 5.98900 6.07660 6.26583 6.32110 6.35524 6.52663 6.61801 6.64335 6.71899 6.88642 7.07272 7.18113 7.54816 7.62821 7.73092 7.79029 7.99931 8.62069 9.21411 10.66689 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.009197 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.618462 B = 3043.844447 C = 4584.843046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 C -0.161 4.161 4 N -0.678 5.678 5 C 0.581 3.419 6 S -0.705 6.705 7 N -0.547 5.547 8 C 0.225 3.775 9 C -0.535 4.535 10 H 0.068 0.932 11 C 0.069 3.931 12 N -0.889 5.889 13 Si 0.897 3.103 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.196 3.804 18 C -0.014 4.014 19 C -0.180 4.180 20 C -0.222 4.222 21 C -0.051 4.051 22 O -0.149 6.149 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.110 0.890 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.408 0.592 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.267 0.733 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.719 1.078 -4.880 5.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 C -0.220 4.220 4 N -0.310 5.310 5 C 0.218 3.782 6 S -0.577 6.577 7 N -0.252 5.252 8 C 0.103 3.897 9 C -0.574 4.574 10 H 0.086 0.914 11 C -0.135 4.135 12 N -0.527 5.527 13 Si 0.724 3.276 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.072 3.928 18 C -0.066 4.066 19 C -0.200 4.200 20 C -0.241 4.241 21 C -0.120 4.120 22 O -0.043 6.043 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.128 0.872 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.248 0.752 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.106 1.070 -5.915 6.369 hybrid contribution -0.628 1.000 2.396 2.671 sum 1.478 2.069 -3.519 4.342 Atomic orbital electron populations 1.22097 0.94420 1.02533 1.02825 1.21259 0.93230 0.93614 0.88527 1.22140 1.03514 0.95011 1.01298 1.45190 1.14904 1.53260 1.17691 1.21948 0.85734 0.80371 0.90109 1.93015 1.58296 1.82553 1.23864 1.47467 1.16412 1.49529 1.11841 1.19780 0.89586 0.99569 0.80745 1.21411 1.23863 1.07794 1.04296 0.91423 1.24906 0.94515 0.96601 0.97450 1.69921 1.24984 1.34577 1.23245 0.86426 0.78423 0.82397 0.80341 1.19445 1.20823 1.20652 1.20055 0.77063 0.90726 1.04911 1.22485 0.97969 0.96748 0.89410 1.21572 1.00100 1.01297 0.97037 1.21734 1.03427 1.01719 0.97257 1.23916 0.98363 0.99276 0.90478 1.84213 1.42996 1.40020 1.37106 0.92111 0.90788 0.92098 0.87248 0.92980 0.90800 0.91914 0.75197 0.94613 0.93169 0.92340 0.87500 0.86513 0.83589 0.84349 0.79087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.38 37.16 0.35 -1.54 16 2 C 0.14 2.08 2.95 -67.93 -0.20 1.88 16 3 C -0.16 -2.40 9.43 37.15 0.35 -2.05 16 4 N -0.68 -12.03 4.94 -55.52 -0.27 -12.30 16 5 C 0.58 11.59 7.66 -86.92 -0.67 10.93 16 6 S -0.71 -15.19 25.98 -107.50 -2.79 -17.98 16 7 N -0.55 -10.80 2.44 -178.46 -0.44 -11.24 16 8 C 0.22 4.84 4.97 -5.20 -0.03 4.82 16 9 C -0.53 -12.88 9.13 -34.44 -0.31 -13.20 16 10 H 0.07 1.77 7.64 -52.49 -0.40 1.36 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -22.85 13.29 55.43 0.74 -22.11 16 13 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 C 0.20 3.55 5.74 -5.19 -0.03 3.52 16 18 C -0.01 -0.27 6.90 -35.62 -0.25 -0.51 16 19 C -0.18 -3.35 10.39 -39.70 -0.41 -3.76 16 20 C -0.22 -3.76 10.91 -39.71 -0.43 -4.19 16 21 C -0.05 -0.85 12.09 29.41 0.36 -0.49 16 22 O -0.15 -2.93 10.65 5.68 0.06 -2.87 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.11 1.79 6.82 -51.93 -0.35 1.43 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.31 7.48 -51.93 -0.39 0.93 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.41 7.38 6.33 -40.82 -0.26 7.12 16 31 H 0.04 0.79 6.36 -51.93 -0.33 0.46 16 32 H 0.05 1.12 7.89 -51.93 -0.41 0.71 16 33 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.11 1.66 7.89 -51.93 -0.41 1.25 16 35 H 0.12 2.13 6.58 -51.93 -0.34 1.79 16 36 H 0.15 2.69 8.06 -52.49 -0.42 2.26 16 37 H 0.14 2.01 8.06 -52.48 -0.42 1.58 16 38 H 0.19 2.39 8.06 -52.48 -0.42 1.96 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -28.81 333.36 -9.48 -38.29 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.41 Total: 11.18 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.37 Total: -2.98 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.03 Total: -45.66 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: 0.06 Total: -2.87 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: -15.19 SS G_CDS: -2.79 Total: -17.98 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.81 -9.48 -38.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007640123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.435 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds