Wall clock time and date at job start Tue Mar 31 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47308 * 2 1 4 4 N 1.46497 * 109.46935 * 180.02562 * 3 2 1 5 5 C 1.34780 * 119.99868 * 180.02562 * 4 3 2 6 6 S 1.71204 * 119.99615 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00581 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00646 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47443 * 270.00265 * 8 7 5 10 10 H 1.08001 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00480 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99528 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00487 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46798 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47215 * 119.99681 * 13 11 9 16 16 H 1.48494 * 109.47431 * 240.00047 * 13 11 9 17 17 C 1.46505 * 119.99455 * 359.97438 * 7 5 4 18 18 C 1.50703 * 109.47064 * 90.00114 * 17 7 5 19 19 C 1.34515 * 125.79060 * 89.99944 * 18 17 7 20 20 C 1.41380 * 106.83832 * 179.97438 * 19 18 17 21 21 C 1.34506 * 106.84493 * 359.97438 * 20 19 18 22 22 O 1.34306 * 125.78568 * 269.69282 * 18 17 7 23 23 H 1.09003 * 109.47494 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46754 * 299.99768 * 1 2 3 25 25 H 1.08996 * 109.47346 * 59.99031 * 1 2 3 26 26 H 1.09005 * 109.46838 * 240.00757 * 2 1 3 27 27 H 1.08996 * 109.47117 * 120.00467 * 2 1 3 28 28 H 1.09005 * 109.46553 * 60.00582 * 3 2 1 29 29 H 1.09002 * 109.47070 * 300.00538 * 3 2 1 30 30 H 0.96993 * 120.00298 * 0.02562 * 4 3 2 31 31 H 1.09006 * 109.46911 * 30.00087 * 8 7 5 32 32 H 1.08996 * 109.47170 * 149.99599 * 8 7 5 33 33 H 0.97003 * 119.99687 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.47068 * 210.00083 * 17 7 5 35 35 H 1.09001 * 109.47372 * 330.00170 * 17 7 5 36 36 H 1.07996 * 126.58016 * 0.03378 * 19 18 17 37 37 H 1.08006 * 126.57610 * 179.97438 * 20 19 18 38 38 H 1.08005 * 125.79499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0002 6 16 3.3229 4.0923 0.0017 7 7 5.5267 2.6097 -0.0013 8 6 6.2592 3.8783 -0.0014 9 6 6.5092 4.3140 -1.4222 10 1 6.1580 3.7064 -2.2431 11 6 7.1864 5.4882 -1.6743 12 7 7.6137 6.2284 -0.6747 13 14 7.4969 6.0279 -3.4354 14 1 6.9190 5.0278 -4.3687 15 1 6.8586 7.3483 -3.6684 16 1 8.9593 6.1368 -3.6693 17 6 6.2592 1.3409 -0.0024 18 6 6.5092 0.9064 -1.4236 19 6 7.5847 1.2251 -2.1660 20 6 7.4091 0.6096 -3.4266 21 6 6.2373 -0.0490 -3.3790 22 8 5.6987 0.1305 -2.1617 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8898 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6766 1.9564 -0.8900 30 1 3.9900 0.6024 -0.0013 31 1 5.6705 4.6378 0.5132 32 1 7.2120 3.7478 0.5116 33 1 8.0898 7.0548 -0.8520 34 1 7.2120 1.4710 0.5108 35 1 5.6705 0.5810 0.5116 36 1 8.4220 1.8336 -1.8579 37 1 8.0862 0.6587 -4.2667 38 1 5.8045 -0.6273 -4.1820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007640193.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:12 Heat of formation + Delta-G solvation = 33.359043 kcal Electronic energy + Delta-G solvation = -20462.532541 eV Core-core repulsion = 17433.231665 eV Total energy + Delta-G solvation = -3029.300876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.29504 -38.88286 -36.17162 -33.22000 -32.73500 -32.32931 -30.63218 -27.76374 -26.65304 -25.34538 -22.94996 -22.13032 -21.45705 -21.14735 -20.00406 -17.68525 -17.17625 -16.85273 -16.27084 -15.61951 -15.58081 -14.74997 -14.69271 -14.30066 -13.78441 -13.43102 -13.10049 -12.91082 -12.61263 -12.45634 -12.31790 -12.10090 -11.75285 -11.50367 -11.32414 -11.21357 -10.97947 -10.68831 -10.61942 -10.25625 -10.12365 -9.64959 -9.49127 -8.41498 -8.34587 -8.09842 -6.94164 -6.38310 -5.99881 -4.00802 1.84598 2.21943 2.74709 2.99938 3.20951 3.33341 3.41345 3.42872 3.48093 3.90543 4.50317 4.74819 4.77290 4.88183 4.94862 5.12122 5.30961 5.36605 5.40427 5.51031 5.54116 5.59962 5.67761 5.94826 6.06832 6.07239 6.08723 6.27200 6.32257 6.45133 6.70084 6.80190 7.18921 7.36285 7.52251 7.59349 7.96332 7.99335 8.21120 8.98600 9.61132 11.09204 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.006911 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.131636 B = 4050.597794 C = 5231.621701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.129 3.871 4 N -0.702 5.702 5 C 0.565 3.435 6 S -0.649 6.649 7 N -0.544 5.544 8 C 0.238 3.762 9 C -0.505 4.505 10 H 0.057 0.943 11 C 0.067 3.933 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.286 1.286 17 C 0.183 3.817 18 C -0.041 4.041 19 C -0.157 4.157 20 C -0.213 4.213 21 C -0.046 4.046 22 O -0.181 6.181 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.389 0.611 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.153 0.847 37 H 0.144 0.856 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 -17.555 0.146 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.005 3.995 4 N -0.336 5.336 5 C 0.206 3.794 6 S -0.520 6.520 7 N -0.251 5.251 8 C 0.119 3.881 9 C -0.544 4.544 10 H 0.076 0.924 11 C -0.135 4.135 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.212 1.212 17 C 0.056 3.944 18 C -0.092 4.092 19 C -0.177 4.177 20 C -0.232 4.232 21 C -0.114 4.114 22 O -0.078 6.078 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.226 0.774 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.096 0.904 36 H 0.171 0.829 37 H 0.162 0.838 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.069 -16.506 0.330 17.270 hybrid contribution 1.176 -0.675 -1.426 1.967 sum -3.893 -17.181 -1.096 17.650 Atomic orbital electron populations 1.21640 0.94340 1.01817 1.02621 1.21764 0.97142 0.96230 1.02366 1.21579 0.77166 0.96423 1.04324 1.45043 1.08065 1.05687 1.74809 1.22184 0.85153 0.91334 0.80716 1.93138 1.66393 1.18284 1.74232 1.47901 1.02240 1.09162 1.65761 1.19993 0.90880 0.77848 0.99345 1.21153 1.35305 1.06752 0.91194 0.92437 1.24784 0.95787 0.95956 0.96992 1.69929 1.38656 1.14231 1.30426 0.86500 0.77356 0.78860 0.85101 1.19947 1.20876 1.21235 1.20006 0.99805 0.86355 0.88249 1.22622 0.91722 0.98939 0.95932 1.21635 1.00610 1.01946 0.93504 1.21841 0.99176 1.02810 0.99394 1.23869 0.95641 1.05122 0.86727 1.83922 1.45214 1.55773 1.22887 0.92439 0.92181 0.92174 0.91538 0.91677 0.90123 0.90181 0.77357 0.90237 0.94562 0.92869 0.86141 0.90404 0.82931 0.83791 0.78635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.14 -1.30 6.05 -26.73 -0.16 -1.46 16 3 C 0.13 1.75 5.13 -4.04 -0.02 1.72 16 4 N -0.70 -10.78 5.42 -62.03 -0.34 -11.12 16 5 C 0.56 11.44 7.70 -86.92 -0.67 10.77 16 6 S -0.65 -16.23 27.17 -107.50 -2.92 -19.15 16 7 N -0.54 -10.85 2.44 -178.46 -0.44 -11.28 16 8 C 0.24 5.85 4.97 -5.20 -0.03 5.82 16 9 C -0.50 -13.71 9.14 -34.44 -0.31 -14.02 16 10 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 11 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 12 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 13 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 14 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.18 2.76 5.74 -5.19 -0.03 2.73 16 18 C -0.04 -0.67 6.90 -35.62 -0.25 -0.91 16 19 C -0.16 -2.64 10.40 -39.70 -0.41 -3.05 16 20 C -0.21 -3.18 10.91 -39.71 -0.43 -3.61 16 21 C -0.05 -0.62 12.09 29.41 0.36 -0.27 16 22 O -0.18 -2.78 10.65 5.68 0.06 -2.72 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.16 7.99 -51.93 -0.41 0.74 16 29 H 0.08 1.23 7.99 -51.93 -0.42 0.82 16 30 H 0.39 5.03 6.20 -40.82 -0.25 4.78 16 31 H 0.08 2.25 6.58 -51.93 -0.34 1.91 16 32 H 0.04 0.89 7.89 -51.93 -0.41 0.48 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.12 1.62 7.89 -51.93 -0.41 1.21 16 35 H 0.08 0.92 6.36 -51.93 -0.33 0.59 16 36 H 0.15 2.62 8.06 -52.49 -0.42 2.20 16 37 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.20 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -34.11 335.98 -10.03 -44.14 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.49 Total: 4.56 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.69 Total: -1.34 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.04 Total: -47.72 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: 0.06 Total: -2.72 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: -16.23 SS G_CDS: -2.92 Total: -19.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.11 -10.03 -44.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007640193.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.502 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds