Wall clock time and date at job start Tue Mar 31 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46863 * 2 1 4 4 N 1.46502 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.36930 * 120.00130 * 274.32866 * 4 3 2 6 6 H 1.08004 * 120.00283 * 337.80385 * 5 4 3 7 7 C 1.38819 * 120.00212 * 157.80460 * 5 4 3 8 8 N 1.31619 * 119.99435 * 7.73077 * 7 5 4 9 9 Si 1.86796 * 120.00312 * 187.73053 * 7 5 4 10 10 H 1.48499 * 109.47072 * 89.99819 * 9 7 5 11 11 H 1.48493 * 109.47337 * 210.00246 * 9 7 5 12 12 H 1.48505 * 109.47074 * 330.00252 * 9 7 5 13 13 C 1.46510 * 119.99914 * 94.33003 * 4 3 2 14 14 C 1.50694 * 109.47024 * 270.00207 * 13 4 3 15 15 O 1.21280 * 120.00106 * 359.97438 * 14 13 4 16 16 N 1.34780 * 120.00222 * 180.02562 * 14 13 4 17 17 C 1.46490 * 120.00382 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47522 * 179.97438 * 17 16 14 19 19 C 1.33394 * 125.20286 * 89.99584 * 18 17 16 20 20 C 1.38426 * 114.92134 * 179.97438 * 19 18 17 21 21 C 1.33394 * 114.91896 * 0.02562 * 20 19 18 22 22 S 1.75882 * 125.20266 * 269.69757 * 18 17 16 23 23 H 1.09001 * 109.47381 * 300.00267 * 1 2 3 24 24 H 1.08994 * 109.47059 * 60.00688 * 1 2 3 25 25 H 1.09001 * 109.46786 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47381 * 239.99733 * 2 1 3 27 27 H 1.09003 * 109.47044 * 119.99534 * 2 1 3 28 28 H 1.08994 * 109.48170 * 59.99762 * 3 2 1 29 29 H 1.09003 * 109.46910 * 299.99616 * 3 2 1 30 30 H 0.97002 * 119.99478 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.46695 * 149.99962 * 13 4 3 32 32 H 1.08995 * 109.46994 * 30.00217 * 13 4 3 33 33 H 0.97002 * 119.99306 * 359.97438 * 16 14 13 34 34 H 1.09000 * 109.47335 * 59.99017 * 17 16 14 35 35 H 1.09004 * 109.47365 * 299.99585 * 17 16 14 36 36 H 1.07996 * 122.53683 * 359.96288 * 19 18 17 37 37 H 1.07993 * 122.53949 * 180.02562 * 20 19 18 38 38 H 1.08005 * 125.20067 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3532 1.1834 6 1 3.7088 1.6377 2.1079 7 6 5.5002 0.8971 1.1941 8 7 6.1361 0.6954 0.0595 9 14 6.3619 0.5696 2.8188 10 1 6.1304 -0.8394 3.2267 11 1 7.8195 0.8066 2.6627 12 1 5.8208 1.4812 3.8587 13 6 4.2380 1.5382 -1.2643 14 6 4.4894 0.1542 -1.8050 15 8 4.0955 -0.8164 -1.1939 16 7 5.1529 -0.0049 -2.9674 17 6 5.3978 -1.3503 -3.4928 18 6 6.1517 -1.2520 -4.7939 19 6 7.4801 -1.2424 -4.9141 20 6 7.9476 -1.1449 -6.2133 21 6 6.9987 -1.0749 -7.1483 22 16 5.4145 -1.1399 -6.3869 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 7.0521 0.3763 0.0670 31 1 5.1903 2.0408 -1.0951 32 1 3.6493 2.1078 -1.9832 33 1 5.4682 0.7714 -3.4560 34 1 4.4456 -1.8532 -3.6620 35 1 5.9865 -1.9197 -2.7735 36 1 8.1409 -1.3056 -4.0622 37 1 9.0007 -1.1269 -6.4520 38 1 7.1761 -0.9956 -8.2107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049981029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:25 Heat of formation + Delta-G solvation = 20.969723 kcal Electronic energy + Delta-G solvation = -20202.389379 eV Core-core repulsion = 17172.551261 eV Total energy + Delta-G solvation = -3029.838118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.49782 -37.62099 -35.63918 -33.63395 -32.80618 -30.54986 -30.03587 -27.26083 -25.44607 -25.30307 -22.86007 -21.87113 -20.08798 -19.32745 -19.13793 -17.40960 -16.67196 -15.68868 -15.31774 -15.05891 -14.69252 -14.17624 -13.98932 -13.57470 -13.00970 -12.83410 -12.79271 -12.63990 -12.44074 -12.14122 -11.85367 -11.56356 -11.37975 -11.05499 -10.92635 -10.73279 -10.69911 -10.49994 -10.23282 -9.97360 -9.80243 -9.51670 -8.87930 -8.66782 -8.45607 -8.12708 -7.96464 -6.74123 -5.76150 -3.14673 0.98384 1.65789 2.03598 2.75942 3.42274 3.48455 3.50168 4.31353 4.41231 4.63209 4.90526 5.05845 5.41825 5.45222 5.58596 5.61199 5.81711 5.87001 5.91494 6.09032 6.20098 6.21617 6.32186 6.35007 6.47762 6.54964 6.59057 6.65615 6.72799 6.95221 7.18961 7.36778 7.47089 7.55486 7.79058 8.39722 8.73606 9.24476 9.78869 9.93364 10.33602 11.30790 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.005108 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.671764 B = 5479.818499 C = 6731.959538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.151 3.849 4 N -0.578 5.578 5 C -0.239 4.239 6 H 0.073 0.927 7 C 0.007 3.993 8 N -0.909 5.909 9 Si 0.909 3.091 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.166 3.834 14 C 0.532 3.468 15 O -0.538 6.538 16 N -0.745 5.745 17 C 0.198 3.802 18 C -0.177 4.177 19 C -0.128 4.128 20 C -0.133 4.133 21 C -0.221 4.221 22 S 0.098 5.902 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.035 0.965 30 H 0.253 0.747 31 H 0.118 0.882 32 H 0.025 0.975 33 H 0.388 0.612 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.183 -0.850 -13.321 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.025 3.975 4 N -0.298 5.298 5 C -0.368 4.368 6 H 0.091 0.909 7 C -0.190 4.190 8 N -0.556 5.556 9 Si 0.740 3.260 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.207 1.207 13 C 0.036 3.964 14 C 0.319 3.681 15 O -0.413 6.413 16 N -0.402 5.402 17 C 0.072 3.928 18 C -0.294 4.294 19 C -0.159 4.159 20 C -0.164 4.164 21 C -0.357 4.357 22 S 0.361 5.639 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.136 0.864 32 H 0.043 0.957 33 H 0.220 0.780 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.829 -1.544 -13.338 13.551 hybrid contribution 2.415 -0.293 0.998 2.630 sum 0.586 -1.837 -12.340 12.490 Atomic orbital electron populations 1.21788 0.98275 1.00162 1.00377 1.22156 0.92335 1.00462 1.03100 1.20919 0.84412 0.93985 0.98213 1.43795 0.99645 1.84015 1.02312 1.19240 0.95219 1.36137 0.86204 0.90885 1.24911 0.97866 0.99281 0.96924 1.69659 1.11427 1.50749 1.23763 0.86181 0.78278 0.78310 0.83272 1.21645 1.21968 1.20724 1.20728 0.98616 0.91132 0.85919 1.22146 0.74607 0.94386 0.76948 1.90488 1.52060 1.42099 1.56647 1.46310 1.62235 1.05857 1.25758 1.19397 0.97600 0.87819 0.87977 1.24755 0.97171 1.09340 0.98182 1.20247 0.94515 1.03170 0.98012 1.20181 1.00508 1.03542 0.92138 1.25613 0.95675 1.11121 1.03255 1.84310 1.08641 1.72414 0.98496 0.93671 0.93826 0.94026 0.91626 0.92332 0.94078 0.94675 0.93661 0.86412 0.95698 0.77984 0.92027 0.90684 0.84031 0.84478 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.14 -2.96 5.67 -26.73 -0.15 -3.11 16 3 C 0.15 3.24 5.72 -4.04 -0.02 3.22 16 4 N -0.58 -14.45 2.07 -174.61 -0.36 -14.81 16 5 C -0.24 -6.53 9.70 -15.06 -0.15 -6.67 16 6 H 0.07 1.97 7.84 -52.48 -0.41 1.56 16 7 C 0.01 0.18 5.41 -17.43 -0.09 0.09 16 8 N -0.91 -25.01 8.21 55.49 0.46 -24.56 16 9 Si 0.91 22.29 29.56 -169.99 -5.02 17.26 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.17 3.86 5.47 -5.19 -0.03 3.83 16 14 C 0.53 12.38 5.79 -10.99 -0.06 12.32 16 15 O -0.54 -14.61 13.89 5.56 0.08 -14.53 16 16 N -0.75 -14.12 5.55 -61.48 -0.34 -14.46 16 17 C 0.20 3.42 6.16 -5.20 -0.03 3.39 16 18 C -0.18 -2.51 5.88 -36.00 -0.21 -2.72 16 19 C -0.13 -1.69 10.05 -41.21 -0.41 -2.11 16 20 C -0.13 -1.48 10.18 -41.21 -0.42 -1.90 16 21 C -0.22 -2.33 11.23 29.04 0.33 -2.00 16 22 S 0.10 1.18 23.33 -107.50 -2.51 -1.32 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.53 6.39 -51.93 -0.33 1.19 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.03 0.68 7.84 -51.93 -0.41 0.27 16 30 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.12 2.94 6.24 -51.93 -0.32 2.62 16 32 H 0.03 0.51 7.86 -51.93 -0.41 0.10 16 33 H 0.39 6.53 8.46 -40.82 -0.35 6.19 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.16 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -30.64 329.13 -9.22 -39.86 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.59 Total: 5.36 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.89 Total: 2.25 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.25 Total: -53.82 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.53 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.51 Total: -1.32 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.64 -9.22 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.827 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds