Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47297 * 2 1 4 4 N 1.46493 * 109.47637 * 180.02562 * 3 2 1 5 5 C 1.36893 * 120.00158 * 94.97084 * 4 3 2 6 6 H 1.07995 * 119.99813 * 166.15005 * 5 4 3 7 7 C 1.39005 * 119.99882 * 346.14382 * 5 4 3 8 8 N 1.31399 * 120.00335 * 340.30754 * 7 5 4 9 9 Si 1.86800 * 119.99855 * 160.30694 * 7 5 4 10 10 H 1.48494 * 109.47271 * 60.00178 * 9 7 5 11 11 H 1.48499 * 109.47028 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47066 * 299.99878 * 9 7 5 13 13 C 1.34777 * 120.00036 * 274.97896 * 4 3 2 14 14 O 1.21722 * 120.00248 * 185.90932 * 13 4 3 15 15 C 1.46560 * 119.99944 * 5.89956 * 13 4 3 16 16 S 1.76220 * 126.17951 * 6.46593 * 15 13 4 17 17 C 1.70917 * 90.37428 * 179.97438 * 16 15 13 18 18 C 1.50701 * 124.70277 * 180.09189 * 17 16 15 19 19 C 1.53001 * 109.46995 * 270.28356 * 18 17 16 20 20 N 1.29376 * 110.59826 * 0.31396 * 17 16 15 21 21 C 1.30945 * 117.46253 * 359.75447 * 20 17 16 22 22 C 1.50700 * 123.03691 * 180.02562 * 21 20 17 23 23 H 1.09000 * 109.46875 * 299.99648 * 1 2 3 24 24 H 1.08999 * 109.47288 * 59.99833 * 1 2 3 25 25 H 1.09004 * 109.47328 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46869 * 239.99868 * 2 1 3 27 27 H 1.08999 * 109.47288 * 120.00167 * 2 1 3 28 28 H 1.08999 * 109.47088 * 300.00289 * 3 2 1 29 29 H 1.09000 * 109.47205 * 59.99645 * 3 2 1 30 30 H 0.96995 * 120.00365 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47039 * 30.28073 * 18 17 16 32 32 H 1.09002 * 109.47636 * 150.28555 * 18 17 16 33 33 H 1.09007 * 109.47093 * 60.00014 * 19 18 17 34 34 H 1.09001 * 109.47209 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.47548 * 300.00239 * 19 18 17 36 36 H 1.08998 * 109.47220 * 269.97535 * 22 21 20 37 37 H 1.09005 * 109.47010 * 29.97549 * 22 21 20 38 38 H 1.09002 * 109.47447 * 149.97407 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1890 1.5455 -1.1819 6 1 5.2454 1.7697 -1.1764 7 6 3.5238 1.3612 -2.3885 8 7 2.3748 0.7242 -2.4148 9 14 4.2633 2.0191 -3.9727 10 1 5.5915 1.3937 -4.1961 11 1 3.3654 1.6950 -5.1102 12 1 4.4206 3.4923 -3.8711 13 6 4.1794 1.3411 1.1619 14 8 5.3917 1.4490 1.1736 15 6 3.4529 1.1010 2.4119 16 16 1.7305 0.7618 2.5655 17 6 1.8919 0.6527 4.2635 18 6 0.7616 0.3580 5.2156 19 6 0.1044 1.6700 5.6487 20 7 3.1182 0.8628 4.6186 21 6 3.9881 1.1061 3.6706 22 6 5.4473 1.3674 3.9419 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.9109 0.5953 -3.2568 31 1 0.0232 -0.2717 4.7192 32 1 1.1505 -0.1602 6.0922 33 1 -0.2846 2.1882 4.7722 34 1 -0.7134 1.4569 6.3371 35 1 0.8428 2.2998 6.1451 36 1 5.6043 2.4363 4.0862 37 1 5.7515 0.8308 4.8407 38 1 6.0415 1.0239 3.0951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065113594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = 12.254936 kcal Electronic energy + Delta-G solvation = -20845.275900 eV Core-core repulsion = 17815.059881 eV Total energy + Delta-G solvation = -3030.216019 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.44921 -38.46130 -35.48963 -33.92584 -32.60101 -31.55960 -30.21682 -27.89870 -25.91591 -25.16135 -24.39091 -21.53753 -21.19753 -20.66997 -18.10402 -17.48106 -17.03076 -15.82382 -15.12441 -14.73616 -14.62228 -14.16572 -14.08115 -13.83673 -13.47035 -13.13495 -12.71751 -12.60988 -12.27131 -11.98087 -11.89782 -11.73395 -11.50078 -11.34795 -11.15114 -11.06092 -11.00486 -10.67544 -10.53677 -10.50290 -10.34836 -10.07042 -9.14834 -8.91631 -8.55607 -8.37710 -8.05850 -7.71249 -6.50403 -3.95469 0.93865 1.94495 2.34208 3.05392 3.15534 3.18797 3.21391 3.96792 4.15150 4.46020 4.72639 4.95725 5.09179 5.28704 5.30728 5.57242 5.75176 5.77247 5.80843 5.85291 5.91413 5.98021 6.05968 6.17204 6.22621 6.24770 6.42586 6.49391 6.49842 6.63614 6.74936 7.00276 7.10192 7.30225 7.66538 7.89566 8.30232 8.35740 8.99108 9.19286 9.79734 10.44067 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.006439 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.302046 B = 4347.792371 C = 5366.605955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.117 3.883 4 N -0.425 5.425 5 C -0.295 4.295 6 H 0.109 0.891 7 C 0.030 3.970 8 N -0.859 5.859 9 Si 0.930 3.070 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.506 3.494 14 O -0.578 6.578 15 C -0.258 4.258 16 S 0.210 5.790 17 C -0.030 4.030 18 C -0.041 4.041 19 C -0.145 4.145 20 N -0.479 5.479 21 C 0.100 3.900 22 C -0.078 4.078 23 H 0.039 0.961 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.120 0.880 27 H 0.042 0.958 28 H 0.107 0.893 29 H 0.042 0.958 30 H 0.272 0.728 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 -0.404 7.408 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C -0.008 4.008 4 N -0.141 5.141 5 C -0.423 4.423 6 H 0.127 0.873 7 C -0.174 4.174 8 N -0.498 5.498 9 Si 0.756 3.244 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.295 3.705 14 O -0.464 6.464 15 C -0.383 4.383 16 S 0.470 5.530 17 C -0.303 4.303 18 C -0.082 4.082 19 C -0.203 4.203 20 N -0.194 5.194 21 C -0.038 4.038 22 C -0.137 4.137 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.137 0.863 27 H 0.060 0.940 28 H 0.125 0.875 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.160 -0.534 7.134 10.852 hybrid contribution 0.921 0.366 -0.544 1.131 sum -7.239 -0.168 6.589 9.790 Atomic orbital electron populations 1.21621 0.96684 1.00493 1.00574 1.22251 0.94731 0.97825 1.03061 1.21759 0.80860 0.97709 1.00520 1.43714 1.05300 1.59756 1.05329 1.19805 0.96081 1.44896 0.81542 0.87335 1.25355 0.96486 0.95878 0.99688 1.69990 1.16270 1.35884 1.27614 0.85928 0.78981 0.79666 0.79850 1.19616 1.20773 1.19777 1.16484 0.86673 0.85591 0.81790 1.90586 1.12820 1.57643 1.85395 1.26206 0.96087 1.16112 0.99883 1.85008 1.06439 1.62749 0.98828 1.27708 0.96097 1.05044 1.01464 1.20065 0.92558 0.98487 0.97062 1.21754 1.00330 0.96782 1.01474 1.65926 1.00849 1.15627 1.37044 1.20651 0.97431 0.99757 0.85979 1.20482 0.88499 1.01592 1.03138 0.94247 0.92518 0.93567 0.86256 0.94002 0.87517 0.94099 0.91734 0.90269 0.89818 0.92467 0.91948 0.92204 0.91490 0.92105 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.68 37.16 0.36 -1.79 16 2 C -0.14 -2.76 4.61 -26.73 -0.12 -2.88 16 3 C 0.12 2.52 4.11 -4.05 -0.02 2.50 16 4 N -0.43 -10.69 2.63 -116.35 -0.31 -10.99 16 5 C -0.29 -7.79 9.42 -15.01 -0.14 -7.93 16 6 H 0.11 3.02 7.29 -52.49 -0.38 2.63 16 7 C 0.03 0.73 4.96 -17.45 -0.09 0.64 16 8 N -0.86 -20.25 8.19 55.50 0.45 -19.80 16 9 Si 0.93 19.33 29.60 -169.99 -5.03 14.30 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 11 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 13 C 0.51 12.83 7.54 -12.91 -0.10 12.74 16 14 O -0.58 -15.95 13.93 5.17 0.07 -15.88 16 15 C -0.26 -5.68 6.14 -36.76 -0.23 -5.90 16 16 S 0.21 3.70 13.99 -107.50 -1.50 2.20 16 17 C -0.03 -0.50 6.63 -13.31 -0.09 -0.59 16 18 C -0.04 -0.51 6.51 -27.88 -0.18 -0.69 16 19 C -0.14 -1.55 9.89 37.16 0.37 -1.19 16 20 N -0.48 -9.24 10.49 -7.47 -0.08 -9.31 16 21 C 0.10 2.08 6.83 -83.50 -0.57 1.51 16 22 C -0.08 -1.48 9.80 36.01 0.35 -1.13 16 23 H 0.04 0.55 7.14 -51.93 -0.37 0.18 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.12 2.72 5.87 -51.93 -0.30 2.42 16 27 H 0.04 0.84 5.37 -30.29 -0.16 0.68 16 28 H 0.11 2.43 6.16 -51.93 -0.32 2.11 16 29 H 0.04 0.83 5.03 -27.31 -0.14 0.69 16 30 H 0.27 6.08 8.31 -40.82 -0.34 5.74 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 2.12 5.93 -51.93 -0.31 1.82 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -28.47 310.65 -7.09 -35.55 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.93 Total: 3.96 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.45 Total: -4.71 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.07 Total: -40.11 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.07 Total: -15.88 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.50 Total: 2.20 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.47 -7.09 -35.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065113594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.808 kcal (2) G-P(sol) polarization free energy of solvation -28.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds