Wall clock time and date at job start Tue Mar 31 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47304 * 2 1 4 4 C 1.50702 * 109.47079 * 180.02562 * 3 2 1 5 5 N 1.29378 * 124.70142 * 90.02408 * 4 3 2 6 6 C 1.30942 * 117.46615 * 179.97438 * 5 4 3 7 7 C 1.50696 * 123.03939 * 179.97438 * 6 5 4 8 8 C 1.36787 * 113.92183 * 0.02562 * 6 5 4 9 9 C 1.46557 * 126.17999 * 180.02562 * 8 6 5 10 10 O 1.21730 * 119.99964 * 352.33500 * 9 8 6 11 11 N 1.34779 * 119.99987 * 172.34113 * 9 8 6 12 12 C 1.36888 * 119.99994 * 182.34336 * 11 9 8 13 13 H 1.08004 * 119.99899 * 12.47199 * 12 11 9 14 14 C 1.39002 * 120.00071 * 192.47739 * 12 11 9 15 15 N 1.31406 * 119.99817 * 24.64536 * 14 12 11 16 16 Si 1.86798 * 120.00126 * 204.64795 * 14 12 11 17 17 H 1.48497 * 109.46958 * 89.99957 * 16 14 12 18 18 H 1.48505 * 109.47239 * 209.99917 * 16 14 12 19 19 H 1.48501 * 109.47079 * 329.99654 * 16 14 12 20 20 C 1.46499 * 119.99962 * 2.33898 * 11 9 8 21 21 C 1.53003 * 109.47002 * 81.25178 * 20 11 9 22 22 S 1.70920 * 124.69895 * 269.72202 * 4 3 2 23 23 H 1.09001 * 109.47391 * 59.99774 * 1 2 3 24 24 H 1.09002 * 109.47164 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47119 * 300.00205 * 1 2 3 26 26 H 1.09001 * 109.47391 * 120.00226 * 2 1 3 27 27 H 1.08998 * 109.47079 * 239.99655 * 2 1 3 28 28 H 1.09006 * 109.46945 * 299.99952 * 3 2 1 29 29 H 1.08998 * 109.47334 * 59.99811 * 3 2 1 30 30 H 1.08998 * 109.47385 * 90.02914 * 7 6 5 31 31 H 1.09003 * 109.46835 * 210.02697 * 7 6 5 32 32 H 1.08996 * 109.47386 * 330.02733 * 7 6 5 33 33 H 0.97003 * 119.99701 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.47084 * 201.24978 * 20 11 9 35 35 H 1.08994 * 109.47477 * 321.25356 * 20 11 9 36 36 H 1.08996 * 109.47038 * 299.99829 * 21 20 11 37 37 H 1.09004 * 109.46979 * 59.99807 * 21 20 11 38 38 H 1.08996 * 109.47138 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2831 1.4430 -1.0646 6 6 5.5822 1.4434 -0.9002 7 6 6.5559 1.4435 -2.0504 8 6 5.9755 1.4425 0.4099 9 6 7.3573 1.4432 0.8983 10 8 8.2795 1.3041 0.1160 11 7 7.6070 1.5978 2.2138 12 6 8.8987 1.6466 2.6641 13 1 9.7112 1.7642 1.9624 14 6 9.1647 1.5446 4.0246 15 7 8.3100 0.9383 4.8176 16 14 10.7372 2.2692 4.7258 17 1 10.4954 3.6771 5.1315 18 1 11.1617 1.4790 5.9093 19 1 11.8044 2.2276 3.6941 20 6 6.4959 1.7138 3.1615 21 6 5.9611 0.3192 3.4935 22 16 4.5206 1.4490 1.4042 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 6.7908 2.4712 -2.3275 31 1 7.4699 0.9295 -1.7527 32 1 6.1114 0.9299 -2.9028 33 1 8.4955 0.8675 5.7670 34 1 6.8459 2.1955 4.0745 35 1 5.7002 2.3117 2.7173 36 1 5.6111 -0.1625 2.5806 37 1 6.7568 -0.2788 3.9378 38 1 5.1342 0.4055 4.1983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:29 Heat of formation + Delta-G solvation = -8.683737 kcal Electronic energy + Delta-G solvation = -20429.454774 eV Core-core repulsion = 17398.330786 eV Total energy + Delta-G solvation = -3031.123988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09526 -40.14102 -37.14736 -36.09279 -34.04640 -32.57241 -31.45490 -29.51937 -28.93278 -26.69574 -24.31417 -24.13047 -22.61763 -22.14938 -19.75410 -19.06492 -18.91098 -17.46891 -16.80811 -16.29308 -16.15090 -15.81748 -15.61953 -15.27673 -15.09710 -14.63876 -14.31385 -14.09003 -13.80111 -13.39018 -13.32744 -13.26404 -12.95363 -12.87617 -12.80313 -12.48722 -12.24891 -12.21780 -12.16756 -12.07460 -11.93835 -11.59775 -11.01659 -10.55477 -10.31140 -10.09880 -9.88657 -9.36310 -8.45529 -5.92682 -0.59601 0.39102 0.82137 1.35839 1.43729 1.54370 1.61151 2.22854 2.31032 2.88991 3.02799 3.15838 3.87787 3.94158 4.13258 4.14267 4.17289 4.23950 4.56836 4.61864 4.66924 4.70854 4.71949 4.81140 4.91032 4.94840 4.98907 5.01863 5.23968 5.25261 5.29846 5.35581 5.47037 5.48113 5.78918 5.96316 6.40817 6.79761 7.05550 7.29457 7.90296 8.53451 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.005299 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.541307 B = 5283.118661 C = 6158.488888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.040 4.040 4 C 0.001 3.999 5 N -0.496 5.496 6 C 0.105 3.895 7 C -0.076 4.076 8 C -0.305 4.305 9 C 0.490 3.510 10 O -0.619 6.619 11 N -0.433 5.433 12 C -0.348 4.348 13 H 0.079 0.921 14 C 0.011 3.989 15 N -0.859 5.859 16 Si 0.988 3.012 17 H -0.265 1.265 18 H -0.270 1.270 19 H -0.278 1.278 20 C 0.111 3.889 21 C -0.146 4.146 22 S 0.241 5.759 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.281 0.719 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.048 0.806 -0.941 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.080 4.080 4 C -0.273 4.273 5 N -0.212 5.212 6 C -0.034 4.034 7 C -0.135 4.135 8 C -0.429 4.429 9 C 0.280 3.720 10 O -0.510 6.510 11 N -0.149 5.149 12 C -0.475 4.475 13 H 0.097 0.903 14 C -0.194 4.194 15 N -0.495 5.495 16 Si 0.812 3.188 17 H -0.190 1.190 18 H -0.194 1.194 19 H -0.203 1.203 20 C -0.014 4.014 21 C -0.205 4.205 22 S 0.501 5.499 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.174 0.702 -0.459 15.197 hybrid contribution 1.777 0.169 -0.518 1.858 sum -13.398 0.871 -0.977 13.461 Atomic orbital electron populations 1.21728 0.93101 1.02581 1.02825 1.21513 0.97640 0.94332 1.02104 1.20491 0.82591 0.99534 1.05387 1.28548 1.03549 1.00789 0.94421 1.66063 1.03752 1.18194 1.33161 1.20953 0.90662 0.98222 0.93550 1.20440 0.96430 1.03058 0.93588 1.25862 0.98365 1.20404 0.98240 1.16977 0.86571 0.85143 0.83277 1.90534 1.45792 1.58792 1.55839 1.43913 1.07135 1.59013 1.04801 1.19695 0.84046 1.51094 0.92708 0.90330 1.25992 1.02640 0.95213 0.95598 1.70107 1.38156 1.34840 1.06399 0.85017 0.77456 0.78794 0.77578 1.19046 1.19449 1.20330 1.21819 0.86713 0.98848 0.94020 1.22168 1.01561 0.96663 1.00089 1.84233 0.93126 1.65220 1.07284 0.92009 0.91927 0.91291 0.91830 0.92942 0.88576 0.87384 0.90670 0.90595 0.89777 0.90869 0.88351 0.92168 0.94609 0.91036 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.12 -2.17 5.92 30.59 0.18 -1.99 16 3 C -0.04 -0.81 5.79 29.85 0.17 -0.64 16 4 C 0.00 0.02 6.63 88.47 0.59 0.61 16 5 N -0.50 -18.10 10.49 -177.53 -1.86 -19.96 16 6 C 0.10 4.33 6.83 42.35 0.29 4.62 16 7 C -0.08 -2.94 9.82 71.23 0.70 -2.24 16 8 C -0.30 -13.46 6.10 24.10 0.15 -13.32 16 9 C 0.49 26.07 7.50 86.41 0.65 26.72 16 10 O -0.62 -36.65 13.94 -4.44 -0.06 -36.71 16 11 N -0.43 -22.70 2.65 -640.19 -1.69 -24.40 16 12 C -0.35 -19.42 9.37 84.09 0.79 -18.63 16 13 H 0.08 4.76 7.35 -2.91 -0.02 4.74 16 14 C 0.01 0.53 4.84 84.94 0.41 0.94 16 15 N -0.86 -41.33 8.78 21.67 0.19 -41.14 16 16 Si 0.99 40.07 29.62 68.60 2.03 42.10 16 17 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 18 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 C 0.11 4.80 4.84 86.38 0.42 5.22 16 21 C -0.15 -5.77 8.45 71.98 0.61 -5.16 16 22 S 0.24 7.95 15.50 -56.49 -0.88 7.07 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.08 3.35 5.91 -2.39 -0.01 3.34 16 32 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.28 12.45 8.31 -92.71 -0.77 11.68 16 34 H 0.10 4.49 5.96 -2.39 -0.01 4.47 16 35 H 0.06 2.36 4.57 -20.67 -0.09 2.27 16 36 H 0.04 1.39 5.88 -8.04 -0.05 1.34 16 37 H 0.07 3.28 6.29 -2.38 -0.02 3.26 16 38 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -65.49 313.98 4.34 -61.15 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.95 Total: 16.94 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 5.66 Total: -5.06 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -3.37 Total: -85.50 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.06 Total: -36.71 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Atomic # 16 Polarization: 7.95 SS G_CDS: -0.88 Total: 7.07 kcal Total: -65.49 4.34 -61.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.467 kcal (2) G-P(sol) polarization free energy of solvation -65.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds