Wall clock time and date at job start Tue Mar 31 2020 05:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47253 * 2 1 4 4 C 1.33395 * 125.19971 * 89.99989 * 3 2 1 5 5 C 1.38426 * 114.91843 * 179.79169 * 4 3 2 6 6 C 1.33385 * 114.92198 * 0.43164 * 5 4 3 7 7 C 1.50695 * 125.20214 * 179.85499 * 6 5 4 8 8 N 1.46503 * 109.46840 * 89.72118 * 7 6 5 9 9 C 1.34777 * 120.00152 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99924 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00167 * 180.02562 * 9 8 7 12 12 N 1.46504 * 109.46792 * 180.02562 * 11 9 8 13 13 C 1.46497 * 119.99523 * 269.99425 * 12 11 9 14 14 C 1.36930 * 120.00062 * 90.00127 * 12 11 9 15 15 H 1.07995 * 120.00696 * 22.34353 * 14 12 11 16 16 C 1.38816 * 119.99902 * 202.34994 * 14 12 11 17 17 N 1.31619 * 119.99868 * 11.43456 * 16 14 12 18 18 Si 1.86795 * 119.99998 * 191.43841 * 16 14 12 19 19 H 1.48493 * 109.47199 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47377 * 119.99990 * 18 16 14 21 21 H 1.48505 * 109.47238 * 239.99607 * 18 16 14 22 22 S 1.75878 * 125.20690 * 270.02623 * 3 2 1 23 23 H 1.08998 * 109.47041 * 299.99752 * 1 2 3 24 24 H 1.09004 * 109.46870 * 59.99356 * 1 2 3 25 25 H 1.08998 * 109.47377 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47445 * 240.00583 * 2 1 3 27 27 H 1.09002 * 109.47353 * 120.00454 * 2 1 3 28 28 H 1.08003 * 122.53566 * 0.02811 * 4 3 2 29 29 H 1.08000 * 122.53603 * 180.27237 * 5 4 3 30 30 H 1.08996 * 109.47253 * 329.72513 * 7 6 5 31 31 H 1.08996 * 109.47260 * 209.72002 * 7 6 5 32 32 H 0.96999 * 119.99892 * 0.02562 * 8 7 6 33 33 H 1.08996 * 109.46821 * 299.99866 * 11 9 8 34 34 H 1.08996 * 109.47138 * 60.00038 * 11 9 8 35 35 H 1.09001 * 109.47148 * 94.12511 * 13 12 11 36 36 H 1.09000 * 109.47095 * 214.12527 * 13 12 11 37 37 H 1.09003 * 109.47682 * 334.12825 * 13 12 11 38 38 H 0.97000 * 120.00460 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2887 2.1458 1.0900 5 6 2.7470 3.4284 0.8430 6 6 2.8543 3.7481 -0.4475 7 6 3.3248 5.0783 -0.9768 8 7 4.7795 5.0486 -1.1484 9 6 5.4254 6.1359 -1.6143 10 8 4.8025 7.1391 -1.8910 11 6 6.9217 6.1052 -1.7914 12 7 7.3791 7.3985 -2.3058 13 6 7.4587 7.6252 -3.7509 14 6 7.7324 8.3952 -1.4359 15 1 8.0239 8.1515 -0.4250 16 6 7.7157 9.7190 -1.8533 17 7 7.1521 10.0409 -2.9983 18 14 8.4934 11.0434 -0.7901 19 1 9.0548 10.4259 0.4381 20 1 9.5799 11.7130 -1.5492 21 1 7.4630 12.0445 -0.4138 22 16 2.3698 2.3770 -1.4371 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.1527 1.7598 2.0895 29 1 2.9963 4.1188 1.6352 30 1 3.0583 5.8650 -0.2710 31 1 2.8496 5.2757 -1.9376 32 1 5.2776 4.2462 -0.9275 33 1 7.3972 5.9080 -0.8307 34 1 7.1880 5.3183 -2.4971 35 1 6.5364 8.0921 -4.0968 36 1 8.3019 8.2802 -3.9701 37 1 7.5968 6.6720 -4.2613 38 1 7.1407 10.9658 -3.2903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971871.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:29 Heat of formation + Delta-G solvation = 16.380921 kcal Electronic energy + Delta-G solvation = -19163.688050 eV Core-core repulsion = 16133.650947 eV Total energy + Delta-G solvation = -3030.037103 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.94526 -38.12988 -35.33558 -34.63476 -33.33174 -31.23810 -29.71835 -27.29308 -25.90131 -25.55093 -23.42273 -22.37370 -21.45507 -19.70164 -18.96975 -17.29611 -16.69473 -16.22128 -15.63850 -15.18333 -14.63963 -14.57279 -14.41444 -14.12082 -13.54268 -13.20591 -13.14493 -12.89759 -12.63859 -12.29749 -12.17078 -11.97917 -11.68745 -11.58393 -11.27835 -11.07619 -10.81913 -10.79229 -10.60563 -10.31039 -9.94483 -9.84459 -9.14797 -8.64371 -8.61221 -8.49086 -8.41375 -6.71032 -5.64512 -3.10868 0.77797 1.44675 1.86658 2.55236 3.42425 3.48831 3.51520 3.62951 3.92832 4.43977 4.56060 4.68242 4.73384 4.94393 5.13406 5.26239 5.43642 5.49234 5.51477 5.56407 5.63002 5.66431 5.74598 5.83265 6.04212 6.07213 6.14350 6.20340 6.34190 6.38694 6.78574 6.95894 7.43860 7.81129 7.90234 8.14982 8.44874 9.15689 9.28802 9.89847 10.37374 11.40230 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041842 B = 0.003036 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.028488 B = 9219.593779 C = 9483.218008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.178 4.178 4 C -0.139 4.139 5 C -0.120 4.120 6 C -0.189 4.189 7 C 0.191 3.809 8 N -0.746 5.746 9 C 0.469 3.531 10 O -0.508 6.508 11 C 0.133 3.867 12 N -0.573 5.573 13 C 0.163 3.837 14 C -0.257 4.257 15 H 0.070 0.930 16 C 0.007 3.993 17 N -0.896 5.896 18 Si 0.906 3.094 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 S 0.109 5.891 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.393 0.607 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.049 0.951 37 H -0.004 1.004 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 -21.340 5.925 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.296 4.296 4 C -0.169 4.169 5 C -0.152 4.152 6 C -0.307 4.307 7 C 0.065 3.935 8 N -0.404 5.404 9 C 0.253 3.747 10 O -0.380 6.380 11 C 0.000 4.000 12 N -0.292 5.292 13 C 0.019 3.981 14 C -0.387 4.387 15 H 0.088 0.912 16 C -0.192 4.192 17 N -0.540 5.540 18 Si 0.736 3.264 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 S 0.374 5.626 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.226 0.774 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.015 0.985 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.784 -20.584 4.007 23.581 hybrid contribution 0.345 0.719 2.260 2.397 sum -10.438 -19.865 6.267 23.299 Atomic orbital electron populations 1.21793 0.94358 1.01899 1.02548 1.20090 0.96139 0.89802 1.03153 1.24569 1.08200 1.00798 0.96047 1.20053 1.03500 0.94192 0.99176 1.20161 1.01990 0.97001 0.96011 1.24592 1.09384 1.00126 0.96572 1.19533 0.83075 0.90283 1.00629 1.46744 1.05995 1.17338 1.70357 1.23767 0.93184 0.81999 0.75720 1.90708 1.68360 1.31451 1.47440 1.21028 0.88075 0.91284 0.99571 1.43895 1.72131 1.10214 1.02988 1.20863 1.01216 0.94362 0.81684 1.19197 1.38366 0.85835 0.95313 0.91232 1.25101 0.99275 0.97296 0.97544 1.70110 1.45209 1.16980 1.21675 0.86168 0.78478 0.82007 0.79742 1.20296 1.21580 1.21714 1.84354 1.64366 1.04764 1.09128 0.92293 0.92414 0.92101 0.90844 0.90092 0.84525 0.84152 0.90300 0.91280 0.77444 0.90873 0.91490 0.94820 0.93238 0.98532 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.05 -0.36 6.43 -27.88 -0.18 -0.54 16 3 C -0.18 -1.67 5.76 -36.00 -0.21 -1.87 16 4 C -0.14 -1.33 10.05 -41.20 -0.41 -1.74 16 5 C -0.12 -1.31 10.05 -41.21 -0.41 -1.72 16 6 C -0.19 -2.28 5.88 -36.01 -0.21 -2.49 16 7 C 0.19 2.82 6.16 -5.19 -0.03 2.79 16 8 N -0.75 -11.81 5.55 -61.47 -0.34 -12.16 16 9 C 0.47 9.92 7.90 -10.98 -0.09 9.83 16 10 O -0.51 -13.66 16.43 5.56 0.09 -13.57 16 11 C 0.13 2.75 6.19 -5.19 -0.03 2.72 16 12 N -0.57 -15.07 2.41 -182.50 -0.44 -15.51 16 13 C 0.16 4.24 9.01 59.85 0.54 4.78 16 14 C -0.26 -7.37 9.67 -15.06 -0.15 -7.51 16 15 H 0.07 1.92 7.84 -52.49 -0.41 1.51 16 16 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 17 N -0.90 -27.58 10.59 55.49 0.59 -26.99 16 18 Si 0.91 22.64 29.57 -169.99 -5.03 17.62 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 S 0.11 1.17 23.31 -107.50 -2.51 -1.34 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.39 5.06 8.46 -40.82 -0.35 4.72 16 33 H 0.07 1.37 8.03 -51.93 -0.42 0.96 16 34 H 0.07 1.18 7.87 -51.93 -0.41 0.77 16 35 H 0.03 0.98 7.42 -51.93 -0.39 0.59 16 36 H 0.05 1.35 7.18 -51.93 -0.37 0.97 16 37 H 0.00 -0.09 7.85 -51.93 -0.41 -0.49 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -34.78 337.39 -9.14 -43.93 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.69 Total: -0.87 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.91 Total: 3.80 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.19 Total: -54.65 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.62 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.78 -9.14 -43.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971871.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.310 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds