Wall clock time and date at job start Tue Mar 31 2020 05:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38429 * 122.53885 * 2 1 4 4 C 1.33387 * 114.91542 * 180.27438 * 3 2 1 5 5 S 1.75885 * 109.59583 * 359.77549 * 4 3 2 6 6 C 1.33384 * 122.53698 * 179.83716 * 2 1 3 7 7 C 1.50703 * 125.20461 * 0.02562 * 6 2 1 8 8 N 1.46505 * 109.47064 * 89.71995 * 7 6 2 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 N 1.46898 * 109.47102 * 180.02562 * 11 9 8 13 13 C 1.46904 * 110.99988 * 66.05234 * 12 11 9 14 14 C 1.46901 * 111.00289 * 189.99932 * 12 11 9 15 15 C 1.50701 * 109.47529 * 170.00209 * 14 12 11 16 16 H 1.08003 * 119.99378 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00269 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99887 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00052 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47261 * 59.99719 * 19 17 15 21 21 H 1.48505 * 109.47333 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47429 * 299.99712 * 19 17 15 23 23 H 1.09000 * 109.46974 * 270.16982 * 1 2 3 24 24 H 1.08999 * 109.46782 * 30.16202 * 1 2 3 25 25 H 1.08997 * 109.47095 * 150.16544 * 1 2 3 26 26 H 1.07991 * 122.54231 * 0.04681 * 3 2 1 27 27 H 1.08002 * 125.20018 * 179.75340 * 4 3 2 28 28 H 1.09002 * 109.47152 * 329.72078 * 7 6 2 29 29 H 1.09001 * 109.46980 * 209.72179 * 7 6 2 30 30 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 31 31 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 32 32 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 33 33 H 1.08996 * 109.47295 * 59.99354 * 13 12 11 34 34 H 1.09002 * 109.47250 * 180.02562 * 13 12 11 35 35 H 1.09007 * 109.46759 * 299.99913 * 13 12 11 36 36 H 1.09002 * 109.47380 * 290.00681 * 14 12 11 37 37 H 1.09000 * 109.46909 * 50.00217 * 14 12 11 38 38 H 0.96992 * 119.99980 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9386 -0.7305 -0.0052 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5192 0.0066 8 7 1.4629 -2.9722 -1.3735 9 6 0.9605 -4.1989 -1.6167 10 8 0.6657 -4.9276 -0.6932 11 6 0.7638 -4.6646 -3.0364 12 7 0.2074 -6.0242 -3.0331 13 6 -1.1494 -6.0364 -2.4702 14 6 0.2223 -6.6024 -4.3834 15 6 -0.1207 -8.0679 -4.3062 16 1 -0.3284 -8.5241 -3.3496 17 6 -0.1681 -8.8263 -5.4566 18 7 0.0854 -8.2708 -6.6215 19 14 -0.5925 -10.6429 -5.3608 20 1 -1.9445 -10.8048 -4.7683 21 1 -0.5776 -11.2274 -6.7259 22 1 0.4066 -11.3406 -4.5123 23 1 -0.3633 0.0030 1.0277 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3633 -0.8914 -0.5112 26 1 1.7966 2.1464 0.0007 27 1 4.3078 1.7822 -0.0105 28 1 0.6944 -2.5180 0.5244 29 1 2.3418 -3.1922 0.5181 30 1 1.6990 -2.3895 -2.1122 31 1 0.0750 -3.9918 -3.5474 32 1 1.7227 -4.6653 -3.5547 33 1 -1.7968 -5.3953 -3.0685 34 1 -1.5374 -7.0550 -2.4792 35 1 -1.1207 -5.6680 -1.4447 36 1 -0.5109 -6.0900 -5.0063 37 1 1.2147 -6.4839 -4.8185 38 1 0.0516 -8.8043 -7.4308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:10 Heat of formation + Delta-G solvation = 1.889207 kcal Electronic energy + Delta-G solvation = -19243.231954 eV Core-core repulsion = 16212.566443 eV Total energy + Delta-G solvation = -3030.665511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.65376 -38.61345 -36.04394 -34.62501 -32.47854 -31.43680 -29.49935 -27.89687 -26.84050 -25.17156 -23.83751 -22.72233 -20.82106 -20.00241 -18.71460 -17.79238 -16.66877 -16.19122 -15.82121 -15.48576 -15.20588 -14.63232 -14.23425 -14.17118 -13.79481 -13.56489 -13.40830 -12.92882 -12.73353 -12.37044 -12.29507 -12.08203 -11.90878 -11.79203 -11.36472 -11.00790 -10.96875 -10.81707 -10.68492 -10.49812 -9.95764 -9.53805 -9.20971 -8.99174 -8.86245 -8.62016 -8.40770 -7.20710 -6.00646 -4.01194 0.60452 1.32736 1.70722 2.31571 2.98082 3.37307 3.39847 3.40406 3.45789 4.39753 4.46375 4.60344 4.90860 5.05170 5.10281 5.15767 5.26914 5.35549 5.36449 5.37878 5.57183 5.69093 5.74308 5.78276 5.84596 6.10121 6.21447 6.32679 6.41470 6.49565 6.94099 7.25356 7.32542 7.59656 7.83609 8.07958 8.21152 8.50149 8.58914 9.06627 9.62770 11.10470 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038028 B = 0.002880 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.126921 B = 9718.864706 C = 9901.677696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.084 4.084 3 C -0.135 4.135 4 C -0.209 4.209 5 S 0.114 5.886 6 C -0.204 4.204 7 C 0.196 3.804 8 N -0.737 5.737 9 C 0.516 3.484 10 O -0.517 6.517 11 C 0.038 3.962 12 N -0.524 5.524 13 C 0.033 3.967 14 C 0.193 3.807 15 C -0.505 4.505 16 H 0.065 0.935 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.140 0.860 27 H 0.164 0.836 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.400 0.600 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.004 0.996 34 H 0.074 0.926 35 H 0.064 0.936 36 H -0.008 1.008 37 H 0.030 0.970 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 21.601 12.261 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.098 4.098 3 C -0.165 4.165 4 C -0.345 4.345 5 S 0.379 5.621 6 C -0.322 4.322 7 C 0.071 3.929 8 N -0.393 5.393 9 C 0.303 3.697 10 O -0.391 6.391 11 C -0.094 4.094 12 N -0.248 5.248 13 C -0.115 4.115 14 C 0.068 3.932 15 C -0.544 4.544 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.728 3.272 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.201 1.201 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.158 0.842 27 H 0.182 0.818 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.234 0.766 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.023 0.977 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.010 0.990 37 H 0.048 0.952 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.321 19.836 13.040 24.565 hybrid contribution -1.677 0.864 -0.995 2.133 sum 4.643 20.700 12.045 24.395 Atomic orbital electron populations 1.20590 0.89531 1.03183 1.02578 1.18952 0.97613 0.91486 1.01756 1.20067 0.92861 0.99299 1.04300 1.25671 0.99836 0.99387 1.09600 1.84469 1.05357 0.99953 1.72298 1.24342 0.96150 0.98685 1.13014 1.19515 1.00650 0.87952 0.84787 1.46174 1.67908 1.17557 1.07635 1.21042 0.76107 0.80101 0.92481 1.90654 1.48637 1.53665 1.46165 1.21941 1.02046 0.93498 0.91897 1.61855 1.21883 1.14525 1.26560 1.22363 0.88501 1.02061 0.98577 1.19786 0.96675 0.94815 0.81891 1.21128 1.46397 0.93539 0.93342 0.91727 1.24980 0.95569 0.98819 0.95262 1.69947 1.49908 1.36337 0.97899 0.86528 0.79027 0.84808 0.76876 1.20250 1.21387 1.20113 0.90969 0.91305 0.91036 0.84220 0.81808 0.89820 0.90648 0.76649 0.93066 0.88466 0.97727 0.90752 0.91746 0.98993 0.95171 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.60 36.01 0.35 -0.41 16 2 C -0.08 -0.74 5.80 -106.25 -0.62 -1.35 16 3 C -0.13 -1.04 9.98 -41.21 -0.41 -1.45 16 4 C -0.21 -1.56 11.23 29.04 0.33 -1.24 16 5 S 0.11 1.00 23.33 -107.50 -2.51 -1.51 16 6 C -0.20 -1.97 5.87 -36.00 -0.21 -2.18 16 7 C 0.20 2.21 5.53 -5.19 -0.03 2.18 16 8 N -0.74 -9.04 5.55 -61.47 -0.34 -9.38 16 9 C 0.52 8.55 7.55 -10.99 -0.08 8.46 16 10 O -0.52 -10.49 14.31 5.56 0.08 -10.41 16 11 C 0.04 0.68 5.45 -4.98 -0.03 0.65 16 12 N -0.52 -11.97 4.49 -245.81 -1.10 -13.07 16 13 C 0.03 0.72 9.03 60.07 0.54 1.26 16 14 C 0.19 5.11 4.72 -4.97 -0.02 5.08 16 15 C -0.51 -14.57 8.46 -34.44 -0.29 -14.86 16 16 H 0.06 1.87 7.12 -52.48 -0.37 1.50 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 25 H 0.07 0.61 7.26 -51.93 -0.38 0.23 16 26 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 27 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.08 0.96 7.33 -51.93 -0.38 0.58 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.40 4.06 8.46 -40.82 -0.35 3.71 16 31 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.10 1.62 7.93 -51.93 -0.41 1.21 16 33 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 34 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 35 H 0.06 1.33 5.88 -51.93 -0.31 1.02 16 36 H -0.01 -0.21 8.12 -51.93 -0.42 -0.64 16 37 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -32.90 332.39 -9.20 -42.10 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.47 Total: -1.22 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.58 Total: -2.38 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.71 Total: -48.63 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.90 -9.20 -42.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.986 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds