Wall clock time and date at job start Tue Mar 31 2020 05:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38429 * 122.53885 * 2 1 4 4 C 1.33387 * 114.91542 * 180.27438 * 3 2 1 5 5 S 1.75885 * 109.59583 * 359.77549 * 4 3 2 6 6 C 1.33384 * 122.53698 * 179.83716 * 2 1 3 7 7 C 1.50703 * 125.20461 * 0.02562 * 6 2 1 8 8 N 1.46505 * 109.47064 * 89.71995 * 7 6 2 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 N 1.46898 * 109.47102 * 180.02562 * 11 9 8 13 13 C 1.46904 * 110.99988 * 66.05234 * 12 11 9 14 14 C 1.46901 * 111.00289 * 189.99932 * 12 11 9 15 15 C 1.50701 * 109.47529 * 170.00209 * 14 12 11 16 16 H 1.08003 * 119.99378 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00269 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99887 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00052 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47261 * 59.99719 * 19 17 15 21 21 H 1.48505 * 109.47333 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47429 * 299.99712 * 19 17 15 23 23 H 1.09000 * 109.46974 * 270.16982 * 1 2 3 24 24 H 1.08999 * 109.46782 * 30.16202 * 1 2 3 25 25 H 1.08997 * 109.47095 * 150.16544 * 1 2 3 26 26 H 1.07991 * 122.54231 * 0.04681 * 3 2 1 27 27 H 1.08002 * 125.20018 * 179.75340 * 4 3 2 28 28 H 1.09002 * 109.47152 * 329.72078 * 7 6 2 29 29 H 1.09001 * 109.46980 * 209.72179 * 7 6 2 30 30 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 31 31 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 32 32 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 33 33 H 1.08996 * 109.47295 * 59.99354 * 13 12 11 34 34 H 1.09002 * 109.47250 * 180.02562 * 13 12 11 35 35 H 1.09007 * 109.46759 * 299.99913 * 13 12 11 36 36 H 1.09002 * 109.47380 * 290.00681 * 14 12 11 37 37 H 1.09000 * 109.46909 * 50.00217 * 14 12 11 38 38 H 0.96992 * 119.99980 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9386 -0.7305 -0.0052 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5192 0.0066 8 7 1.4629 -2.9722 -1.3735 9 6 0.9605 -4.1989 -1.6167 10 8 0.6657 -4.9276 -0.6932 11 6 0.7638 -4.6646 -3.0364 12 7 0.2074 -6.0242 -3.0331 13 6 -1.1494 -6.0364 -2.4702 14 6 0.2223 -6.6024 -4.3834 15 6 -0.1207 -8.0679 -4.3062 16 1 -0.3284 -8.5241 -3.3496 17 6 -0.1681 -8.8263 -5.4566 18 7 0.0854 -8.2708 -6.6215 19 14 -0.5925 -10.6429 -5.3608 20 1 -1.9445 -10.8048 -4.7683 21 1 -0.5776 -11.2274 -6.7259 22 1 0.4066 -11.3406 -4.5123 23 1 -0.3633 0.0030 1.0277 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3633 -0.8914 -0.5112 26 1 1.7966 2.1464 0.0007 27 1 4.3078 1.7822 -0.0105 28 1 0.6944 -2.5180 0.5244 29 1 2.3418 -3.1922 0.5181 30 1 1.6990 -2.3895 -2.1122 31 1 0.0750 -3.9918 -3.5474 32 1 1.7227 -4.6653 -3.5547 33 1 -1.7968 -5.3953 -3.0685 34 1 -1.5374 -7.0550 -2.4792 35 1 -1.1207 -5.6680 -1.4447 36 1 -0.5109 -6.0900 -5.0063 37 1 1.2147 -6.4839 -4.8185 38 1 0.0516 -8.8043 -7.4308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:10 Heat of formation + Delta-G solvation = -20.797863 kcal Electronic energy + Delta-G solvation = -19244.215739 eV Core-core repulsion = 16212.566443 eV Total energy + Delta-G solvation = -3031.649296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91889 -39.40449 -37.74373 -35.79861 -34.62237 -32.24091 -30.56569 -29.45019 -28.50935 -26.40358 -25.39116 -23.43910 -22.54930 -21.39994 -19.44659 -18.80939 -18.33259 -17.74407 -16.90386 -16.79870 -16.50090 -16.07457 -15.68874 -15.45266 -15.15577 -14.66557 -14.58229 -14.18227 -13.66399 -13.61142 -13.59527 -13.27684 -12.90928 -12.84643 -12.75478 -12.62679 -12.57471 -12.52365 -12.32885 -11.96166 -11.62903 -11.45834 -10.80036 -10.60409 -10.13996 -9.65916 -9.28588 -9.01102 -8.20562 -6.29671 -0.06089 0.66688 1.07422 1.41595 1.44734 1.52699 1.64147 1.66731 2.25160 2.43227 3.12012 3.40365 3.61850 3.91727 4.04353 4.14895 4.32594 4.41961 4.49271 4.58147 4.59901 4.62690 4.70061 4.72485 4.80732 5.10422 5.12342 5.13288 5.16119 5.27868 5.38206 5.47917 5.59315 5.64448 6.02112 6.28652 6.42042 6.65787 6.84799 7.27013 7.39514 8.90223 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038028 B = 0.002880 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.126921 B = 9718.864706 C = 9901.677696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.197 4.197 5 S 0.093 5.907 6 C -0.225 4.225 7 C 0.201 3.799 8 N -0.715 5.715 9 C 0.523 3.477 10 O -0.559 6.559 11 C 0.035 3.965 12 N -0.542 5.542 13 C 0.043 3.957 14 C 0.209 3.791 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.271 1.271 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.163 0.837 27 H 0.189 0.811 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.412 0.588 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.014 0.986 34 H 0.054 0.946 35 H 0.074 0.926 36 H -0.028 1.028 37 H 0.013 0.987 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 23.061 12.686 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.093 4.093 3 C -0.174 4.174 4 C -0.333 4.333 5 S 0.359 5.641 6 C -0.342 4.342 7 C 0.076 3.924 8 N -0.370 5.370 9 C 0.310 3.690 10 O -0.436 6.436 11 C -0.096 4.096 12 N -0.267 5.267 13 C -0.105 4.105 14 C 0.083 3.917 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.193 4.193 18 N -0.572 5.572 19 Si 0.792 3.208 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.196 1.196 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.181 0.819 27 H 0.206 0.794 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.249 0.751 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.092 0.908 36 H -0.010 1.010 37 H 0.031 0.969 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.404 21.354 13.468 26.045 hybrid contribution -1.655 0.569 -1.099 2.066 sum 4.749 21.923 12.369 25.615 Atomic orbital electron populations 1.20630 0.88807 1.03371 1.03110 1.19218 0.98269 0.91594 1.00204 1.20319 0.92913 0.99880 1.04242 1.26011 1.00419 0.98791 1.08063 1.84549 1.05081 1.01699 1.72773 1.24129 0.96651 0.97905 1.15502 1.19449 1.00453 0.88919 0.83537 1.45954 1.65937 1.16147 1.08933 1.20706 0.76096 0.80940 0.91285 1.90639 1.50902 1.55159 1.46925 1.22015 1.02706 0.91431 0.93444 1.61695 1.22794 1.17871 1.24303 1.22248 0.88078 1.01064 0.99159 1.19438 0.94792 0.94051 0.83409 1.21423 1.46940 0.95008 0.93271 0.92504 1.25839 0.95145 1.03511 0.94778 1.70050 1.50415 1.38140 0.98556 0.85470 0.79031 0.79062 0.77267 1.19386 1.20430 1.19631 0.90254 0.89728 0.92199 0.81936 0.79366 0.89985 0.91793 0.75143 0.90930 0.87451 0.96732 0.92761 0.90793 1.01003 0.96918 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.60 71.24 0.68 -0.62 16 2 C -0.08 -1.21 5.80 -20.92 -0.12 -1.34 16 3 C -0.14 -1.80 9.98 21.22 0.21 -1.59 16 4 C -0.20 -2.42 11.23 66.72 0.75 -1.67 16 5 S 0.09 1.53 23.33 -56.49 -1.32 0.21 16 6 C -0.22 -4.06 5.87 24.59 0.14 -3.92 16 7 C 0.20 4.43 5.53 85.63 0.47 4.90 16 8 N -0.72 -16.91 5.55 -466.78 -2.59 -19.50 16 9 C 0.52 17.09 7.55 87.66 0.66 17.75 16 10 O -0.56 -22.73 14.31 -3.03 -0.04 -22.78 16 11 C 0.04 1.24 5.45 85.56 0.47 1.71 16 12 N -0.54 -25.02 4.49 -931.62 -4.18 -29.21 16 13 C 0.04 1.85 9.03 127.69 1.15 3.00 16 14 C 0.21 11.28 4.72 85.56 0.40 11.68 16 15 C -0.53 -30.92 8.46 25.60 0.22 -30.71 16 16 H 0.06 3.35 7.12 -2.91 -0.02 3.33 16 17 C 0.01 0.32 5.46 84.65 0.46 0.78 16 18 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 19 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.08 0.84 8.13 -2.39 -0.02 0.82 16 25 H 0.06 0.93 7.26 -2.39 -0.02 0.91 16 26 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 27 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 28 H 0.08 1.85 7.33 -2.39 -0.02 1.83 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.41 7.77 8.46 -92.71 -0.78 6.99 16 31 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 32 H 0.11 3.53 7.93 -2.39 -0.02 3.51 16 33 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 2.52 6.76 -2.39 -0.02 2.51 16 35 H 0.07 3.06 5.88 -2.38 -0.01 3.05 16 36 H -0.03 -1.57 8.12 -2.39 -0.02 -1.59 16 37 H 0.01 0.72 7.93 -2.39 -0.02 0.70 16 38 H 0.27 15.01 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -70.62 332.39 -0.04 -70.66 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.28 Total: 9.08 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 5.50 Total: -0.01 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -6.49 Total: -104.41 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.04 Total: -22.78 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.32 Total: 0.21 kcal Total: -70.62 -0.04 -70.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.859 kcal (2) G-P(sol) polarization free energy of solvation -70.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds