Wall clock time and date at job start Tue Mar 31 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47222 * 2 1 4 4 N 1.46498 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.36944 * 119.99664 * 270.00208 * 4 3 2 6 6 H 1.07998 * 119.99577 * 140.36790 * 5 4 3 7 7 C 1.38808 * 120.00211 * 320.36744 * 5 4 3 8 8 N 1.31619 * 120.00292 * 162.88730 * 7 5 4 9 9 Si 1.86804 * 119.99997 * 342.89469 * 7 5 4 10 10 H 1.48491 * 109.47370 * 95.52617 * 9 7 5 11 11 H 1.48497 * 109.47087 * 215.52947 * 9 7 5 12 12 H 1.48503 * 109.46805 * 335.52487 * 9 7 5 13 13 C 1.46499 * 120.00254 * 89.99980 * 4 3 2 14 14 C 1.50704 * 109.46822 * 269.82310 * 13 4 3 15 15 C 1.38267 * 119.98217 * 275.47391 * 14 13 4 16 16 C 1.38228 * 120.04928 * 179.97438 * 15 14 13 17 17 C 1.38228 * 120.02250 * 359.79152 * 16 15 14 18 18 N 1.48004 * 120.01049 * 180.25222 * 17 16 15 19 19 O 1.21802 * 120.00014 * 0.20893 * 18 17 16 20 20 O 1.21802 * 119.99612 * 180.21459 * 18 17 16 21 21 C 1.38436 * 119.97553 * 0.46202 * 17 16 15 22 22 F 1.35091 * 120.02525 * 179.78884 * 21 17 16 23 23 C 1.38175 * 119.98996 * 95.46073 * 14 13 4 24 24 H 1.08990 * 109.47383 * 59.99924 * 1 2 3 25 25 H 1.09006 * 109.46703 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46716 * 299.99385 * 1 2 3 27 27 H 1.09002 * 109.46932 * 240.00276 * 2 1 3 28 28 H 1.09001 * 109.47243 * 120.00537 * 2 1 3 29 29 H 1.09002 * 109.46942 * 60.00281 * 3 2 1 30 30 H 1.09001 * 109.47450 * 300.00410 * 3 2 1 31 31 H 0.96995 * 120.00236 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.46890 * 149.82201 * 13 4 3 33 33 H 1.09000 * 109.46663 * 29.81604 * 13 4 3 34 34 H 1.07998 * 119.97792 * 359.97438 * 15 14 13 35 35 H 1.07994 * 119.98834 * 180.02562 * 16 15 14 36 36 H 1.07999 * 120.01218 * 0.03278 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4423 1.1851 6 1 5.0840 0.8457 1.2921 7 6 3.7358 2.2089 2.2494 8 7 4.1704 1.9665 3.4679 9 14 2.5073 3.5844 1.9524 10 1 1.1323 3.0826 2.2019 11 1 2.7967 4.7137 2.8723 12 1 2.6167 4.0507 0.5467 13 6 4.2370 1.4427 -1.2696 14 6 4.4919 0.0219 -1.7027 15 6 5.5877 -0.6639 -1.2122 16 6 5.8224 -1.9673 -1.6081 17 6 4.9593 -2.5879 -2.4916 18 7 5.2078 -3.9854 -2.9110 19 8 6.1709 -4.5900 -2.4747 20 8 4.4493 -4.5306 -3.6926 21 6 3.8648 -1.9004 -2.9874 22 9 3.0230 -2.5045 -3.8542 23 6 3.6303 -0.5949 -2.5895 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.8526 2.5019 4.2116 32 1 5.1881 1.9593 -1.1403 33 1 3.6462 1.9538 -2.0297 34 1 6.2607 -0.1810 -0.5193 35 1 6.6784 -2.5023 -1.2241 36 1 2.7746 -0.0588 -2.9727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094773926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:53 Heat of formation + Delta-G solvation = -5.697336 kcal Electronic energy + Delta-G solvation = -22432.857995 eV Core-core repulsion = 18835.650331 eV Total energy + Delta-G solvation = -3597.207664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.24294 -42.01638 -39.46926 -36.65256 -36.44129 -33.16609 -32.57950 -31.19611 -30.79442 -27.82151 -25.85885 -25.06189 -23.23294 -22.48063 -21.34733 -20.73687 -19.34459 -18.64346 -17.53931 -17.13245 -17.02954 -16.39247 -15.85398 -15.64403 -14.91540 -14.57179 -14.49573 -13.98274 -13.65001 -13.28205 -12.88322 -12.65906 -12.55988 -12.17408 -11.87836 -11.74263 -11.50388 -11.42668 -11.15904 -11.06212 -11.01170 -10.92387 -10.63454 -10.36191 -9.91212 -9.73965 -9.39674 -9.08077 -8.71824 -7.15127 -6.19394 -3.72450 -0.12268 0.86832 1.38397 1.43147 3.15610 3.21771 3.31540 3.34147 3.66597 4.27449 4.31555 4.55218 4.77215 4.82058 5.01220 5.14188 5.22072 5.46330 5.50201 5.52399 5.59981 5.78994 5.82968 5.87725 5.95093 6.14325 6.21302 6.28204 6.34790 6.37796 6.40718 6.56825 6.69203 6.87919 7.71183 7.81579 8.12181 8.68412 9.44797 9.79977 10.94431 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.005193 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.978811 B = 5390.074882 C = 5947.521614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.134 3.866 4 N -0.593 5.593 5 C -0.283 4.283 6 H 0.081 0.919 7 C 0.043 3.957 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.285 1.285 11 H -0.301 1.301 12 H -0.268 1.268 13 C 0.170 3.830 14 C 0.004 3.996 15 C -0.107 4.107 16 C -0.031 4.031 17 C -0.100 4.100 18 N 0.037 4.963 19 O -0.167 6.167 20 O -0.163 6.163 21 C 0.165 3.835 22 F -0.111 7.111 23 C -0.155 4.155 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -2.492 -11.085 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C 0.009 3.991 4 N -0.314 5.314 5 C -0.411 4.411 6 H 0.099 0.901 7 C -0.159 4.159 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.213 1.213 11 H -0.229 1.229 12 H -0.193 1.193 13 C 0.043 3.957 14 C 0.000 4.000 15 C -0.126 4.126 16 C -0.051 4.051 17 C -0.185 4.185 18 N 0.555 4.445 19 O -0.381 6.381 20 O -0.378 6.378 21 C 0.144 3.856 22 F -0.089 7.089 23 C -0.175 4.175 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.070 -1.762 -10.695 10.892 hybrid contribution -0.904 0.038 -0.147 0.917 sum -1.975 -1.724 -10.843 11.155 Atomic orbital electron populations 1.21748 0.97063 1.00849 1.01173 1.22114 0.94187 0.99999 1.02069 1.21337 0.83996 0.94433 0.99347 1.44110 1.00308 1.85627 1.01307 1.18701 1.11084 1.23711 0.87639 0.90139 1.25461 0.97878 0.97229 0.95303 1.69802 1.45361 1.39834 0.98567 0.86772 0.80625 0.82702 0.78039 1.21306 1.22907 1.19316 1.20117 0.98711 0.87669 0.89220 1.21652 0.89899 1.00659 0.87833 1.21305 0.98804 0.92639 0.99856 1.21024 0.97282 0.94984 0.91768 1.21154 1.03034 0.83986 1.10371 1.43390 0.99629 1.02607 0.98914 1.94515 1.20509 1.64889 1.58196 1.94574 1.43727 1.69767 1.29695 1.17368 0.87058 0.91438 0.89744 1.91625 1.68548 1.82923 1.65789 1.21183 1.02735 0.92143 1.01408 0.93378 0.93388 0.93019 0.92949 0.91441 0.92706 0.94044 0.92372 0.89967 0.92238 0.82644 0.82521 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.14 -2.48 6.26 -26.73 -0.17 -2.65 16 3 C 0.13 2.52 4.47 -4.04 -0.02 2.50 16 4 N -0.59 -11.76 2.05 -174.61 -0.36 -12.12 16 5 C -0.28 -6.84 9.95 -15.06 -0.15 -6.99 16 6 H 0.08 2.08 8.03 -52.49 -0.42 1.66 16 7 C 0.04 1.13 5.38 -17.43 -0.09 1.03 16 8 N -0.90 -25.27 13.97 55.49 0.78 -24.49 16 9 Si 0.89 20.43 24.78 -169.99 -4.21 16.22 16 10 H -0.29 -6.47 6.76 56.52 0.38 -6.09 16 11 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -5.91 7.07 56.52 0.40 -5.51 16 13 C 0.17 2.60 5.84 -5.19 -0.03 2.57 16 14 C 0.00 0.05 5.30 -104.63 -0.55 -0.50 16 15 C -0.11 -1.44 9.72 -39.57 -0.38 -1.83 16 16 C -0.03 -0.42 9.55 -39.59 -0.38 -0.80 16 17 C -0.10 -1.50 6.86 -79.89 -0.55 -2.05 16 18 N 0.04 0.62 4.45 33.99 0.15 0.77 16 19 O -0.17 -2.76 18.45 -29.46 -0.54 -3.30 16 20 O -0.16 -2.84 17.42 -29.46 -0.51 -3.35 16 21 C 0.17 2.38 7.25 -39.42 -0.29 2.09 16 22 F -0.11 -1.67 15.48 2.25 0.03 -1.63 16 23 C -0.15 -2.03 7.75 -39.52 -0.31 -2.33 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.84 5.87 -51.93 -0.31 0.53 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.06 1.17 3.14 -51.93 -0.16 1.00 16 30 H 0.04 0.68 7.89 -51.93 -0.41 0.27 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.08 1.23 8.02 -51.93 -0.42 0.81 16 33 H 0.06 0.79 7.80 -51.93 -0.40 0.38 16 34 H 0.16 2.03 8.03 -52.49 -0.42 1.61 16 35 H 0.16 1.81 7.61 -52.49 -0.40 1.41 16 36 H 0.15 1.71 8.04 -52.49 -0.42 1.29 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -28.12 311.08 -6.74 -34.86 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.21 Total: -0.85 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.55 Total: -10.80 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.57 Total: -35.84 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -1.06 Total: -6.65 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.03 Total: -1.63 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.21 Total: 16.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.12 -6.74 -34.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094773926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.162 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds