Wall clock time and date at job start Tue Mar 31 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47145 * 2 1 4 4 N 1.46500 * 109.46961 * 239.99202 * 2 1 3 5 5 C 1.34775 * 119.99554 * 85.00441 * 4 2 1 6 6 O 1.21281 * 120.00532 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99770 * 179.97438 * 5 4 2 8 8 N 1.46904 * 109.47181 * 180.02562 * 7 5 4 9 9 C 1.46895 * 110.99734 * 293.95151 * 8 7 5 10 10 C 1.46901 * 111.00072 * 170.00047 * 8 7 5 11 11 C 1.50695 * 109.47170 * 189.99713 * 10 8 7 12 12 H 1.08003 * 119.99852 * 0.02562 * 11 10 8 13 13 C 1.37879 * 120.00193 * 179.97438 * 11 10 8 14 14 N 1.31512 * 119.99662 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00036 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46894 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47126 * 120.00116 * 15 13 11 18 18 H 1.48504 * 109.46960 * 240.00129 * 15 13 11 19 19 C 1.50707 * 109.46722 * 119.99648 * 2 1 3 20 20 C 1.33388 * 125.19940 * 259.99864 * 19 2 1 21 21 C 1.38433 * 114.91766 * 179.97438 * 20 19 2 22 22 C 1.33389 * 114.92022 * 0.02562 * 21 20 19 23 23 S 1.75879 * 125.20222 * 79.97389 * 19 2 1 24 24 H 1.09003 * 109.46833 * 59.99944 * 1 2 3 25 25 H 1.08997 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46926 * 300.00631 * 1 2 3 27 27 H 0.96999 * 119.99949 * 264.99733 * 4 2 1 28 28 H 1.09006 * 109.46994 * 300.00198 * 7 5 4 29 29 H 1.09003 * 109.47317 * 59.99966 * 7 5 4 30 30 H 1.09006 * 109.47021 * 60.00214 * 9 8 7 31 31 H 1.09001 * 109.47248 * 179.97438 * 9 8 7 32 32 H 1.09001 * 109.47416 * 300.00276 * 9 8 7 33 33 H 1.09003 * 109.46732 * 310.00101 * 10 8 7 34 34 H 1.08997 * 109.47421 * 69.99916 * 10 8 7 35 35 H 0.97004 * 119.99584 * 179.97438 * 14 13 11 36 36 H 1.08000 * 122.54563 * 359.95533 * 20 19 2 37 37 H 1.07998 * 122.53579 * 180.02562 * 21 20 19 38 38 H 1.07995 * 125.20209 * 180.26467 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8592 1.1584 -2.4116 7 6 2.6499 -0.7289 -3.5873 8 7 2.6999 0.2151 -4.7118 9 6 1.3504 0.6555 -5.0897 10 6 3.4032 -0.3713 -5.8605 11 6 3.6510 0.6955 -6.8957 12 1 3.3195 1.7079 -6.7179 13 6 4.3017 0.3793 -8.0694 14 7 4.7057 -0.8534 -8.2857 15 14 4.6095 1.7018 -9.3523 16 1 4.0606 2.9951 -8.8714 17 1 6.0702 1.8381 -9.5821 18 1 3.9416 1.3232 -10.6235 19 6 2.0323 -0.7104 1.2306 20 6 2.4670 -0.1116 2.3404 21 6 2.8800 -0.9716 3.3436 22 6 2.7811 -2.2685 3.0481 23 16 2.1343 -2.4556 1.4232 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.2491 -1.6319 -1.1524 28 1 3.6493 -1.1208 -3.3976 29 1 1.9777 -1.5512 -3.8324 30 1 0.8780 1.1487 -4.2401 31 1 1.4164 1.3539 -5.9240 32 1 0.7555 -0.2087 -5.3850 33 1 4.3558 -0.7856 -5.5304 34 1 2.7932 -1.1636 -6.2943 35 1 5.1632 -1.0760 -9.1117 36 1 2.4950 0.9626 2.4482 37 1 3.2539 -0.6190 4.2935 38 1 3.0518 -3.0797 3.7076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:16 Heat of formation + Delta-G solvation = 5.353806 kcal Electronic energy + Delta-G solvation = -19397.160439 eV Core-core repulsion = 16366.645164 eV Total energy + Delta-G solvation = -3030.515275 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75660 -38.19177 -36.22243 -35.10512 -32.49278 -31.52321 -28.79949 -27.96984 -26.82785 -24.80800 -24.03026 -22.26583 -20.80420 -20.28166 -19.19329 -17.88392 -16.74540 -16.21067 -15.72858 -15.44213 -15.23141 -14.63253 -14.17421 -13.96551 -13.82913 -13.46349 -13.23652 -12.96429 -12.68113 -12.48276 -12.33931 -12.07673 -11.81019 -11.61516 -11.37819 -11.02161 -10.93359 -10.82482 -10.65800 -10.51788 -9.95619 -9.46211 -9.16222 -9.09152 -8.88564 -8.75754 -8.42029 -7.21469 -6.01258 -4.01582 0.67902 1.29540 1.69093 2.43336 2.95690 3.23904 3.33796 3.40992 3.47720 4.32074 4.45993 4.77140 4.98509 5.07190 5.08801 5.20002 5.22027 5.28145 5.35247 5.53269 5.70903 5.76336 5.82475 5.84579 5.95178 6.05041 6.14272 6.32858 6.41745 6.51402 6.93409 7.24729 7.32108 7.54466 7.83245 8.07221 8.20462 8.48212 8.57595 9.06856 9.62512 11.09920 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035341 B = 0.003060 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.086281 B = 9147.674002 C = 9440.389848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.105 0.895 4 N -0.738 5.738 5 C 0.519 3.481 6 O -0.515 6.515 7 C 0.037 3.963 8 N -0.523 5.523 9 C 0.033 3.967 10 C 0.192 3.808 11 C -0.504 4.504 12 H 0.066 0.934 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.899 3.101 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.181 4.181 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.214 4.214 23 S 0.103 5.897 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.396 0.604 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.004 0.996 33 H 0.030 0.970 34 H -0.007 1.007 35 H 0.260 0.740 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 -4.614 23.196 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.123 0.877 4 N -0.393 5.393 5 C 0.306 3.694 6 O -0.388 6.388 7 C -0.095 4.095 8 N -0.248 5.248 9 C -0.115 4.115 10 C 0.067 3.933 11 C -0.542 4.542 12 H 0.084 0.916 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.299 4.299 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.349 4.349 23 S 0.366 5.634 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.230 0.770 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.023 0.977 33 H 0.048 0.952 34 H 0.010 0.990 35 H 0.070 0.930 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.870 -4.670 22.231 23.733 hybrid contribution 0.349 0.436 0.056 0.562 sum -6.521 -4.234 22.288 23.605 Atomic orbital electron populations 1.22202 0.93985 1.02479 1.03036 1.19251 0.93988 0.96400 0.79511 0.87690 1.46277 1.69614 1.13857 1.09570 1.21027 0.76719 0.87583 0.84101 1.90647 1.48079 1.15741 1.84364 1.21957 1.01737 0.94623 0.91190 1.61862 1.17608 1.37555 1.07729 1.22364 0.88810 0.99049 1.01297 1.19799 0.93000 0.94356 0.86099 1.21200 1.36542 0.95923 1.00570 0.91618 1.24986 0.95778 0.95587 0.98338 1.69969 1.40118 1.18006 1.25955 0.86422 0.77867 0.81967 0.81093 1.19571 1.21008 1.21134 1.24742 1.08243 0.96513 1.00434 1.20137 1.01607 1.01545 0.92796 1.20182 1.03026 0.92244 1.00862 1.25646 1.08915 1.00725 0.99644 1.84258 1.62850 1.04093 1.12152 0.91059 0.92333 0.91440 0.77001 0.88429 0.93030 0.91747 0.90729 0.97721 0.95153 0.98971 0.93011 0.83989 0.84135 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.47 37.16 0.35 -1.27 16 2 C 0.22 2.43 3.00 -69.08 -0.21 2.22 16 3 H 0.11 1.34 7.56 -51.93 -0.39 0.94 16 4 N -0.74 -9.28 5.06 -54.93 -0.28 -9.56 16 5 C 0.52 8.63 7.52 -10.99 -0.08 8.55 16 6 O -0.51 -10.29 13.97 5.56 0.08 -10.21 16 7 C 0.04 0.66 5.45 -4.97 -0.03 0.63 16 8 N -0.52 -11.94 4.49 -245.82 -1.10 -13.04 16 9 C 0.03 0.71 9.03 60.06 0.54 1.25 16 10 C 0.19 5.08 4.72 -4.98 -0.02 5.05 16 11 C -0.50 -14.50 8.46 -34.44 -0.29 -14.79 16 12 H 0.07 1.91 7.12 -52.48 -0.37 1.53 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 15 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.18 -1.78 5.45 -36.00 -0.20 -1.98 16 20 C -0.13 -1.17 10.04 -41.20 -0.41 -1.58 16 21 C -0.13 -1.05 10.18 -41.20 -0.42 -1.46 16 22 C -0.21 -1.64 11.23 29.04 0.33 -1.32 16 23 S 0.10 0.89 22.31 -107.50 -2.40 -1.51 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.40 4.21 7.68 -40.82 -0.31 3.89 16 28 H 0.10 1.64 7.93 -51.93 -0.41 1.23 16 29 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.06 1.32 5.88 -51.93 -0.31 1.02 16 31 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 32 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 34 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 332.13 15.07 5.01 5.01 Total: -1.00 -32.72 332.13 -9.02 -41.74 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.50 Total: -0.05 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.54 Total: -3.24 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.65 Total: -48.74 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.40 Total: -1.51 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.72 -9.02 -41.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.097 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds