Wall clock time and date at job start Tue Mar 31 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 5 5 C 1.34777 * 119.99665 * 275.27733 * 4 2 1 6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 2 7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 2 8 8 N 1.46899 * 109.46987 * 179.97438 * 7 5 4 9 9 C 1.46903 * 110.99879 * 293.94909 * 8 7 5 10 10 C 1.46896 * 111.00331 * 169.99914 * 8 7 5 11 11 C 1.50701 * 109.47377 * 189.99925 * 10 8 7 12 12 H 1.07999 * 119.99940 * 359.97438 * 11 10 8 13 13 C 1.37885 * 119.99918 * 179.97438 * 11 10 8 14 14 N 1.31509 * 120.00142 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99680 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46964 * 119.99807 * 15 13 11 18 18 H 1.48494 * 109.47132 * 239.99688 * 15 13 11 19 19 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 20 20 C 1.33389 * 125.20664 * 100.00572 * 19 2 1 21 21 C 1.38421 * 114.92317 * 179.97438 * 20 19 2 22 22 C 1.33392 * 114.92238 * 359.97438 * 21 20 19 23 23 S 1.75880 * 109.59086 * 359.75331 * 22 21 20 24 24 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 26 26 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 27 27 H 0.97001 * 119.99790 * 94.99446 * 4 2 1 28 28 H 1.09003 * 109.47112 * 299.99065 * 7 5 4 29 29 H 1.08993 * 109.47916 * 59.99687 * 7 5 4 30 30 H 1.09001 * 109.46920 * 60.00315 * 9 8 7 31 31 H 1.09001 * 109.47382 * 180.02562 * 9 8 7 32 32 H 1.09000 * 109.47175 * 300.00357 * 9 8 7 33 33 H 1.09000 * 109.46945 * 309.99895 * 10 8 7 34 34 H 1.09001 * 109.47294 * 69.99822 * 10 8 7 35 35 H 0.96999 * 120.00274 * 180.02562 * 14 13 11 36 36 H 1.08002 * 122.53688 * 359.97438 * 20 19 2 37 37 H 1.08002 * 122.53977 * 180.02562 * 21 20 19 38 38 H 1.07993 * 125.20251 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1418 -0.0197 2.3585 6 8 1.8534 1.1571 2.4129 7 6 2.6382 -0.7317 3.5904 8 7 2.6831 0.2110 4.7161 9 6 3.6894 1.2565 4.4874 10 6 2.9325 -0.4918 5.9817 11 6 2.7294 0.4592 7.1330 12 1 2.4441 1.4834 6.9434 13 6 2.9080 0.0217 8.4283 14 7 3.2560 -1.2253 8.6591 15 14 2.6569 1.2008 9.8553 16 1 2.2718 2.5362 9.3321 17 1 1.5798 0.6864 10.7387 18 1 3.9188 1.3169 10.6293 19 6 2.0324 -0.7103 -1.2305 20 6 2.4672 -0.1117 -2.3404 21 6 2.8812 -0.9716 -3.3430 22 6 2.7831 -2.2686 -3.0472 23 16 2.1432 -2.4555 -1.4196 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.2490 -1.6319 1.1525 28 1 1.9643 -1.5539 3.8313 29 1 3.6382 -1.1239 3.4053 30 1 3.4414 1.8072 3.5801 31 1 3.7021 1.9405 5.3360 32 1 4.6717 0.7973 4.3766 33 1 2.2403 -1.3285 6.0752 34 1 3.9568 -0.8645 5.9947 35 1 3.3812 -1.5332 9.5704 36 1 2.4942 0.9625 -2.4485 37 1 3.2561 -0.6191 -4.2925 38 1 3.0581 -3.0797 -3.7050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:18 Heat of formation + Delta-G solvation = 5.335413 kcal Electronic energy + Delta-G solvation = -19394.886084 eV Core-core repulsion = 16364.370012 eV Total energy + Delta-G solvation = -3030.516072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75682 -38.20161 -36.22500 -35.10340 -32.49369 -31.51761 -28.79615 -27.96605 -26.83599 -24.79590 -24.03657 -22.26905 -20.80966 -20.28262 -19.19902 -17.88358 -16.75349 -16.19800 -15.72549 -15.47671 -15.23318 -14.58181 -14.27545 -13.88395 -13.74127 -13.62069 -13.17239 -12.96867 -12.65532 -12.47970 -12.36331 -12.06253 -11.80841 -11.61173 -11.37039 -11.02034 -10.94059 -10.82269 -10.65414 -10.50564 -9.95531 -9.48441 -9.21616 -9.01379 -8.91220 -8.76742 -8.42122 -7.21479 -6.01327 -4.01657 0.66752 1.28565 1.68260 2.42034 2.95505 3.23861 3.33714 3.40923 3.47627 4.32129 4.45911 4.75926 4.98512 5.06893 5.10354 5.19413 5.22707 5.27034 5.35162 5.55914 5.71600 5.76558 5.82745 5.84355 5.95092 6.08772 6.13025 6.33334 6.42008 6.51536 6.93660 7.24587 7.32179 7.54316 7.83168 8.07049 8.20384 8.48130 8.57514 9.06793 9.62419 11.09854 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040245 B = 0.003019 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.569057 B = 9271.549098 C = 9524.939676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.216 3.784 3 H 0.104 0.896 4 N -0.738 5.738 5 C 0.519 3.481 6 O -0.515 6.515 7 C 0.037 3.963 8 N -0.523 5.523 9 C 0.033 3.967 10 C 0.192 3.808 11 C -0.504 4.504 12 H 0.066 0.934 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.899 3.101 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.181 4.181 20 C -0.131 4.131 21 C -0.133 4.133 22 C -0.214 4.214 23 S 0.105 5.895 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.396 0.604 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.004 0.996 33 H 0.030 0.970 34 H -0.008 1.008 35 H 0.260 0.740 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -3.287 -24.507 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.109 3.891 3 H 0.122 0.878 4 N -0.393 5.393 5 C 0.306 3.694 6 O -0.388 6.388 7 C -0.095 4.095 8 N -0.247 5.247 9 C -0.115 4.115 10 C 0.067 3.933 11 C -0.542 4.542 12 H 0.084 0.916 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.299 4.299 20 C -0.162 4.162 21 C -0.163 4.163 22 C -0.350 4.350 23 S 0.368 5.632 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.023 0.977 33 H 0.049 0.951 34 H 0.010 0.990 35 H 0.070 0.930 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.420 -3.543 -23.338 23.729 hybrid contribution 1.188 0.655 -0.284 1.386 sum -1.232 -2.888 -23.621 23.829 Atomic orbital electron populations 1.22208 0.93860 1.02582 1.03129 1.19247 0.94133 0.96256 0.79467 0.87800 1.46281 1.69664 1.13944 1.09447 1.21027 0.76888 0.87607 0.83904 1.90648 1.47941 1.15861 1.84379 1.21954 1.00446 0.96371 0.90738 1.61861 1.49140 1.12338 1.01409 1.22366 0.91083 0.95705 1.02377 1.19800 0.95023 0.94172 0.84264 1.21202 1.45593 0.97473 0.89965 0.91616 1.24986 0.95421 0.95314 0.98966 1.69963 1.48223 1.15340 1.20524 0.86423 0.77625 0.81227 0.82078 1.19575 1.21012 1.21130 1.24757 1.08144 0.96545 1.00471 1.20129 1.01679 1.01520 0.92841 1.20177 1.03056 0.92246 1.00860 1.25651 1.08958 1.00725 0.99658 1.84284 1.62978 1.04075 1.11858 0.92279 0.90844 0.91496 0.77009 0.88420 0.93034 0.91746 0.90722 0.97722 0.95150 0.98977 0.93007 0.84020 0.84156 0.81829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.46 37.16 0.35 -1.34 16 2 C 0.22 2.44 3.00 -69.08 -0.21 2.23 16 3 H 0.10 1.30 7.56 -51.93 -0.39 0.91 16 4 N -0.74 -9.28 5.06 -54.93 -0.28 -9.55 16 5 C 0.52 8.62 7.52 -10.99 -0.08 8.54 16 6 O -0.51 -10.28 13.98 5.55 0.08 -10.20 16 7 C 0.04 0.66 5.45 -4.98 -0.03 0.63 16 8 N -0.52 -11.93 4.49 -245.83 -1.10 -13.03 16 9 C 0.03 0.71 9.03 60.07 0.54 1.25 16 10 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 11 C -0.50 -14.48 8.46 -34.44 -0.29 -14.78 16 12 H 0.07 1.91 7.12 -52.49 -0.37 1.53 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 15 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.18 -1.76 5.45 -36.00 -0.20 -1.96 16 20 C -0.13 -1.15 10.04 -41.21 -0.41 -1.57 16 21 C -0.13 -1.03 10.18 -41.21 -0.42 -1.45 16 22 C -0.21 -1.62 11.23 29.04 0.33 -1.30 16 23 S 0.10 0.90 22.30 -107.50 -2.40 -1.50 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.40 4.20 7.66 -40.82 -0.31 3.89 16 28 H 0.10 1.62 7.93 -51.93 -0.41 1.21 16 29 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 30 H 0.06 1.33 5.88 -51.93 -0.31 1.03 16 31 H 0.07 1.71 6.76 -51.93 -0.35 1.35 16 32 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 34 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -32.66 332.11 -9.02 -41.68 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.50 Total: -0.03 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.54 Total: -3.22 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.65 Total: -48.71 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.40 Total: -1.50 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.66 -9.02 -41.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.016 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds