Wall clock time and date at job start Tue Mar 31 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 5 5 C 1.34777 * 119.99665 * 275.27733 * 4 2 1 6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 2 7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 2 8 8 N 1.46899 * 109.46987 * 179.97438 * 7 5 4 9 9 C 1.46903 * 110.99879 * 293.94909 * 8 7 5 10 10 C 1.46896 * 111.00331 * 169.99914 * 8 7 5 11 11 C 1.50701 * 109.47377 * 189.99925 * 10 8 7 12 12 H 1.07999 * 119.99940 * 359.97438 * 11 10 8 13 13 C 1.37885 * 119.99918 * 179.97438 * 11 10 8 14 14 N 1.31509 * 120.00142 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99680 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46964 * 119.99807 * 15 13 11 18 18 H 1.48494 * 109.47132 * 239.99688 * 15 13 11 19 19 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 20 20 C 1.33389 * 125.20664 * 100.00572 * 19 2 1 21 21 C 1.38421 * 114.92317 * 179.97438 * 20 19 2 22 22 C 1.33392 * 114.92238 * 359.97438 * 21 20 19 23 23 S 1.75880 * 109.59086 * 359.75331 * 22 21 20 24 24 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 26 26 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 27 27 H 0.97001 * 119.99790 * 94.99446 * 4 2 1 28 28 H 1.09003 * 109.47112 * 299.99065 * 7 5 4 29 29 H 1.08993 * 109.47916 * 59.99687 * 7 5 4 30 30 H 1.09001 * 109.46920 * 60.00315 * 9 8 7 31 31 H 1.09001 * 109.47382 * 180.02562 * 9 8 7 32 32 H 1.09000 * 109.47175 * 300.00357 * 9 8 7 33 33 H 1.09000 * 109.46945 * 309.99895 * 10 8 7 34 34 H 1.09001 * 109.47294 * 69.99822 * 10 8 7 35 35 H 0.96999 * 120.00274 * 180.02562 * 14 13 11 36 36 H 1.08002 * 122.53688 * 359.97438 * 20 19 2 37 37 H 1.08002 * 122.53977 * 180.02562 * 21 20 19 38 38 H 1.07993 * 125.20251 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1418 -0.0197 2.3585 6 8 1.8534 1.1571 2.4129 7 6 2.6382 -0.7317 3.5904 8 7 2.6831 0.2110 4.7161 9 6 3.6894 1.2565 4.4874 10 6 2.9325 -0.4918 5.9817 11 6 2.7294 0.4592 7.1330 12 1 2.4441 1.4834 6.9434 13 6 2.9080 0.0217 8.4283 14 7 3.2560 -1.2253 8.6591 15 14 2.6569 1.2008 9.8553 16 1 2.2718 2.5362 9.3321 17 1 1.5798 0.6864 10.7387 18 1 3.9188 1.3169 10.6293 19 6 2.0324 -0.7103 -1.2305 20 6 2.4672 -0.1117 -2.3404 21 6 2.8812 -0.9716 -3.3430 22 6 2.7831 -2.2686 -3.0472 23 16 2.1432 -2.4555 -1.4196 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.2490 -1.6319 1.1525 28 1 1.9643 -1.5539 3.8313 29 1 3.6382 -1.1239 3.4053 30 1 3.4414 1.8072 3.5801 31 1 3.7021 1.9405 5.3360 32 1 4.6717 0.7973 4.3766 33 1 2.2403 -1.3285 6.0752 34 1 3.9568 -0.8645 5.9947 35 1 3.3812 -1.5332 9.5704 36 1 2.4942 0.9625 -2.4485 37 1 3.2561 -0.6191 -4.2925 38 1 3.0581 -3.0797 -3.7050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096969460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:18 Heat of formation + Delta-G solvation = -16.850022 kcal Electronic energy + Delta-G solvation = -19395.848117 eV Core-core repulsion = 16364.370012 eV Total energy + Delta-G solvation = -3031.478105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.03609 -39.00326 -37.79831 -36.31677 -34.62770 -32.60427 -29.92837 -29.34855 -28.60062 -26.19534 -25.29078 -23.37459 -22.28814 -21.61288 -20.04196 -18.90025 -18.38496 -17.82777 -16.82108 -16.61823 -16.47513 -16.24891 -15.75634 -15.31568 -15.20428 -14.84343 -14.25938 -14.08032 -13.67464 -13.57929 -13.54841 -13.23985 -13.10886 -12.97203 -12.76017 -12.65223 -12.59417 -12.41246 -12.30827 -11.97126 -11.62667 -11.42505 -10.74032 -10.61525 -10.25376 -9.63607 -9.41127 -9.02770 -8.21029 -6.29877 0.01423 0.62773 1.05153 1.41040 1.41873 1.55862 1.61381 1.76866 2.11308 2.42149 3.11667 3.37729 3.51780 3.84454 4.15053 4.24086 4.27116 4.31497 4.39806 4.56520 4.58061 4.67573 4.68549 4.71921 4.86813 5.09374 5.14415 5.15648 5.19795 5.27372 5.34676 5.41623 5.57192 5.64495 6.01255 6.27421 6.36731 6.62262 6.84950 7.23489 7.39346 8.90172 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040245 B = 0.003019 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.569057 B = 9271.549098 C = 9524.939676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.218 3.782 3 H 0.090 0.910 4 N -0.720 5.720 5 C 0.526 3.474 6 O -0.553 6.553 7 C 0.033 3.967 8 N -0.540 5.540 9 C 0.042 3.958 10 C 0.208 3.792 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.968 3.032 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.203 4.203 20 C -0.129 4.129 21 C -0.142 4.142 22 C -0.208 4.208 23 S 0.098 5.902 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.407 0.593 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.013 0.987 33 H 0.014 0.986 34 H -0.028 1.028 35 H 0.265 0.735 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -3.535 -25.987 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.111 3.889 3 H 0.108 0.892 4 N -0.374 5.374 5 C 0.312 3.688 6 O -0.430 6.430 7 C -0.098 4.098 8 N -0.264 5.264 9 C -0.106 4.106 10 C 0.082 3.918 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.193 4.193 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.201 1.201 19 C -0.320 4.320 20 C -0.160 4.160 21 C -0.172 4.172 22 C -0.343 4.343 23 S 0.361 5.639 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.243 0.757 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.032 0.968 34 H -0.011 1.011 35 H 0.074 0.926 36 H 0.169 0.831 37 H 0.181 0.819 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.311 -3.826 -24.865 25.264 hybrid contribution 1.170 0.663 0.032 1.346 sum -1.141 -3.163 -24.833 25.060 Atomic orbital electron populations 1.22147 0.93347 1.02932 1.02776 1.19236 0.94510 0.95669 0.79438 0.89193 1.46091 1.68190 1.14365 1.08776 1.20678 0.76627 0.86992 0.84466 1.90634 1.49952 1.17333 1.85033 1.22037 1.01976 0.95905 0.89879 1.61705 1.49685 1.13339 1.01720 1.22252 0.91306 0.95195 1.01831 1.19455 0.93150 0.93381 0.85800 1.21467 1.46074 0.97507 0.91326 0.92503 1.25843 0.94823 0.97022 1.01644 1.70061 1.48671 1.16965 1.21465 0.85359 0.77939 0.78946 0.78527 1.19266 1.20170 1.20148 1.24550 1.10071 0.97271 1.00138 1.20400 1.00530 1.02355 0.92716 1.20432 1.03060 0.92130 1.01540 1.26015 1.07751 1.01509 0.99042 1.84289 1.63303 1.03148 1.13118 0.91531 0.93207 0.89793 0.75656 0.87284 0.91135 0.90808 0.92664 0.96854 0.96818 1.01051 0.92565 0.83142 0.81905 0.79492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.46 71.98 0.68 -2.47 16 2 C 0.22 4.75 3.00 44.25 0.13 4.88 16 3 H 0.09 2.24 7.56 -2.39 -0.02 2.22 16 4 N -0.72 -17.52 5.06 -446.09 -2.26 -19.77 16 5 C 0.53 17.32 7.52 87.66 0.66 17.98 16 6 O -0.55 -22.24 13.98 -3.04 -0.04 -22.29 16 7 C 0.03 1.18 5.45 85.56 0.47 1.65 16 8 N -0.54 -24.95 4.49 -931.66 -4.18 -29.13 16 9 C 0.04 1.84 9.03 127.69 1.15 3.00 16 10 C 0.21 11.22 4.72 85.56 0.40 11.63 16 11 C -0.53 -30.72 8.46 25.60 0.22 -30.50 16 12 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 13 C 0.00 0.28 5.46 84.66 0.46 0.74 16 14 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 15 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 C -0.20 -3.64 5.45 24.59 0.13 -3.50 16 20 C -0.13 -2.01 10.04 21.22 0.21 -1.80 16 21 C -0.14 -1.80 10.18 21.22 0.22 -1.58 16 22 C -0.21 -2.56 11.23 66.72 0.75 -1.81 16 23 S 0.10 1.50 22.30 -56.49 -1.26 0.24 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.41 8.12 7.66 -92.71 -0.71 7.41 16 28 H 0.11 3.59 7.93 -2.39 -0.02 3.57 16 29 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 30 H 0.07 3.07 5.88 -2.39 -0.01 3.06 16 31 H 0.05 2.57 6.76 -2.39 -0.02 2.56 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.01 0.78 7.93 -2.39 -0.02 0.76 16 34 H -0.03 -1.61 8.12 -2.39 -0.02 -1.63 16 35 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.19 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -70.03 332.11 0.40 -69.64 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.35 Total: 11.48 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.49 Total: -1.79 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -6.16 Total: -104.52 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.04 Total: -22.29 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.26 Total: 0.24 kcal Total: -70.03 0.40 -69.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.785 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds