Wall clock time and date at job start Tue Mar 31 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46860 * 2 1 4 4 N 1.46501 * 109.47085 * 179.97438 * 3 2 1 5 5 C 1.37096 * 119.99756 * 264.74779 * 4 3 2 6 6 H 1.08001 * 119.99540 * 146.16489 * 5 4 3 7 7 C 1.38948 * 120.00080 * 326.16260 * 5 4 3 8 8 N 1.31403 * 120.00202 * 337.68463 * 7 5 4 9 9 Si 1.86798 * 119.99762 * 157.68769 * 7 5 4 10 10 H 1.48506 * 109.47374 * 60.00017 * 9 7 5 11 11 H 1.48503 * 109.47257 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47428 * 299.99914 * 9 7 5 13 13 C 1.34772 * 119.99812 * 84.74733 * 4 3 2 14 14 O 1.21289 * 120.00146 * 180.02562 * 13 4 3 15 15 C 1.50702 * 120.00101 * 359.97438 * 13 4 3 16 16 C 1.50700 * 109.47125 * 179.97438 * 15 13 4 17 17 C 1.33639 * 122.75169 * 124.73532 * 16 15 13 18 18 S 1.76196 * 107.92770 * 179.97438 * 17 16 15 19 19 C 1.70978 * 90.28000 * 0.27499 * 18 17 16 20 20 C 1.50697 * 124.91224 * 179.84135 * 19 18 17 21 21 C 1.53006 * 109.47163 * 269.99767 * 20 19 18 22 22 N 1.29025 * 110.16794 * 359.83839 * 19 18 17 23 23 H 1.09004 * 109.47452 * 299.99690 * 1 2 3 24 24 H 1.08994 * 109.47575 * 60.00090 * 1 2 3 25 25 H 1.08998 * 109.47056 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47097 * 240.00108 * 2 1 3 27 27 H 1.09003 * 109.47191 * 119.99441 * 2 1 3 28 28 H 1.08997 * 109.47178 * 60.00157 * 3 2 1 29 29 H 1.09001 * 109.46575 * 300.00213 * 3 2 1 30 30 H 0.97000 * 120.00110 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.46927 * 60.00140 * 15 13 4 32 32 H 1.08993 * 109.47261 * 299.99867 * 15 13 4 33 33 H 1.08006 * 126.03308 * 0.03961 * 17 16 15 34 34 H 1.08998 * 109.47656 * 29.99603 * 20 19 18 35 35 H 1.09004 * 109.47409 * 149.99880 * 20 19 18 36 36 H 1.09003 * 109.46784 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.46701 * 300.00420 * 21 20 19 38 38 H 1.08997 * 109.46906 * 60.00469 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1899 1.5515 1.1832 6 1 5.1327 1.0402 1.3102 7 6 3.6712 2.3197 2.2183 8 7 2.8001 3.2688 1.9594 9 14 4.2122 2.0032 3.9780 10 1 5.6804 2.1985 4.0873 11 1 3.5185 2.9505 4.8872 12 1 3.8686 0.6095 4.3586 13 6 4.1793 1.3356 -1.1614 14 8 5.3922 1.3352 -1.1609 15 6 3.4263 1.2153 -2.4612 16 6 4.4061 1.1111 -3.6015 17 6 4.3902 0.1028 -4.4784 18 16 5.6920 0.3697 -5.6354 19 6 6.1333 1.8064 -4.8201 20 6 7.2695 2.7114 -5.2212 21 6 8.5512 2.2645 -4.5152 22 7 5.3527 2.0034 -3.8119 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6765 1.9563 -0.8900 30 1 2.4382 3.8053 2.6820 31 1 2.7994 2.0960 -2.6007 32 1 2.8001 0.3236 -2.4372 33 1 3.7005 -0.7284 -4.4786 34 1 7.4122 2.6591 -6.3006 35 1 7.0357 3.7369 -4.9350 36 1 9.3729 2.9195 -4.8050 37 1 8.4085 2.3169 -3.4358 38 1 8.7851 1.2392 -4.8015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098022448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:54 Heat of formation + Delta-G solvation = 0.775026 kcal Electronic energy + Delta-G solvation = -20134.672786 eV Core-core repulsion = 17103.958960 eV Total energy + Delta-G solvation = -3030.713826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.77139 -38.19254 -35.18051 -34.05130 -32.76356 -31.21574 -30.57129 -27.84840 -25.76508 -25.16923 -24.22325 -21.79495 -20.92877 -19.58297 -18.97044 -17.09541 -16.76895 -16.02580 -15.16152 -14.95340 -14.48255 -14.33947 -14.01793 -13.93508 -13.69550 -13.24393 -12.86482 -12.73168 -12.51263 -11.95678 -11.76690 -11.61809 -11.51435 -11.38503 -11.15865 -11.04012 -11.00046 -10.89990 -10.57582 -10.32462 -10.18282 -9.90082 -9.20288 -9.07194 -8.87045 -8.52172 -8.16866 -7.40323 -6.26337 -3.86735 1.02253 1.65058 1.99272 3.19907 3.22992 3.28494 3.33040 3.99836 4.21787 4.32484 4.92361 5.04036 5.07550 5.23217 5.31193 5.39584 5.57120 5.63467 5.65345 5.68002 5.80274 5.84371 5.94562 6.03896 6.12352 6.16407 6.26578 6.32770 6.41346 6.50269 6.52122 6.63505 6.95848 7.33486 7.65885 8.20330 8.31695 8.59723 9.27636 9.49416 10.11266 10.77472 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.005020 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.978904 B = 5576.869978 C = 6654.233170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.101 3.899 4 N -0.445 5.445 5 C -0.303 4.303 6 H 0.090 0.910 7 C 0.035 3.965 8 N -0.870 5.870 9 Si 0.916 3.084 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.466 3.534 14 O -0.564 6.564 15 C -0.068 4.068 16 C 0.111 3.889 17 C -0.266 4.266 18 S 0.074 5.926 19 C 0.056 3.944 20 C -0.043 4.043 21 C -0.147 4.147 22 N -0.433 5.433 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.046 0.954 30 H 0.267 0.733 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.173 0.827 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -4.511 -12.756 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.024 4.024 4 N -0.164 5.164 5 C -0.431 4.431 6 H 0.107 0.893 7 C -0.169 4.169 8 N -0.509 5.509 9 Si 0.742 3.258 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.253 3.747 14 O -0.446 6.446 15 C -0.111 4.111 16 C -0.021 4.021 17 C -0.405 4.405 18 S 0.328 5.672 19 C -0.224 4.224 20 C -0.085 4.085 21 C -0.206 4.206 22 N -0.146 5.146 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.190 0.810 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.486 -4.424 -13.184 13.915 hybrid contribution -0.647 -0.129 1.616 1.746 sum -0.161 -4.553 -11.568 12.433 Atomic orbital electron populations 1.21679 0.96365 1.00617 1.01600 1.21991 0.94855 0.99475 1.01591 1.21670 0.82195 0.94337 1.04180 1.43465 1.04458 1.63780 1.04746 1.19375 1.06714 1.28264 0.88755 0.89253 1.25288 0.97466 0.93757 1.00368 1.69915 1.31176 1.16979 1.32834 0.86172 0.79086 0.78192 0.82311 1.19840 1.21022 1.19991 1.19933 0.88085 0.82492 0.84173 1.90542 1.13815 1.53798 1.86423 1.20370 0.95859 1.03716 0.91107 1.19833 0.95362 0.90311 0.96585 1.26651 1.05931 1.06057 1.01812 1.83590 1.27609 1.24041 1.31995 1.27065 1.01515 0.98569 0.95235 1.20173 0.90244 0.97982 1.00059 1.21765 0.95468 1.01163 1.02173 1.66002 1.03932 1.29696 1.14953 0.92707 0.93162 0.93514 0.93352 0.91716 0.86777 0.93567 0.92300 0.88482 0.88907 0.80954 0.90143 0.88893 0.91757 0.91277 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.14 -2.51 6.17 -26.73 -0.16 -2.68 16 3 C 0.10 2.18 4.72 -4.04 -0.02 2.16 16 4 N -0.44 -11.44 2.56 -114.81 -0.29 -11.73 16 5 C -0.30 -8.56 8.98 -14.93 -0.13 -8.70 16 6 H 0.09 2.66 7.70 -52.49 -0.40 2.26 16 7 C 0.03 0.93 4.92 -17.47 -0.09 0.84 16 8 N -0.87 -23.72 11.33 55.50 0.63 -23.09 16 9 Si 0.92 20.94 29.61 -169.99 -5.03 15.90 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.47 11.79 7.56 -10.99 -0.08 11.71 16 14 O -0.56 -16.43 15.27 5.55 0.08 -16.35 16 15 C -0.07 -1.32 4.80 -29.03 -0.14 -1.46 16 16 C 0.11 2.13 5.64 -84.23 -0.47 1.65 16 17 C -0.27 -4.15 11.07 29.12 0.32 -3.83 16 18 S 0.07 1.01 23.18 -107.50 -2.49 -1.49 16 19 C 0.06 0.91 6.64 -13.46 -0.09 0.82 16 20 C -0.04 -0.55 6.52 -27.88 -0.18 -0.73 16 21 C -0.15 -1.81 9.90 37.16 0.37 -1.44 16 22 N -0.43 -8.79 9.68 -8.06 -0.08 -8.87 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.81 6.59 -51.93 -0.34 0.47 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.11 2.75 5.34 -51.93 -0.28 2.47 16 29 H 0.05 0.92 6.66 -51.93 -0.35 0.57 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.10 1.81 7.41 -51.93 -0.38 1.42 16 32 H 0.09 1.53 6.42 -51.93 -0.33 1.20 16 33 H 0.17 2.16 8.06 -52.48 -0.42 1.74 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -33.23 329.52 -7.98 -41.21 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.45 Total: 2.82 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.31 Total: -3.37 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.26 Total: -43.69 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.08 Total: -16.35 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.90 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.23 -7.98 -41.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.983 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds