Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53000 * 109.47479 * 2 1 4 4 O 1.42905 * 109.47368 * 119.99947 * 2 1 3 5 5 C 1.35919 * 117.00429 * 154.99204 * 4 2 1 6 6 C 1.38702 * 120.05954 * 5.49222 * 5 4 2 7 7 C 1.38162 * 119.95852 * 179.70566 * 6 5 4 8 8 C 1.38272 * 120.07169 * 0.54778 * 7 6 5 9 9 C 1.50699 * 119.93986 * 179.72759 * 8 7 6 10 10 C 1.52998 * 109.47058 * 269.72567 * 9 8 7 11 11 C 1.53005 * 109.47369 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47338 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00028 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99916 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99818 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46929 * 60.00305 * 16 14 12 18 18 H 1.48503 * 109.46846 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47227 * 300.00019 * 16 14 12 20 20 C 1.38244 * 120.12378 * 359.44851 * 8 7 6 21 21 C 1.38261 * 120.03897 * 0.27807 * 20 8 7 22 22 Cl 1.73601 * 120.03605 * 180.02562 * 21 20 8 23 23 H 1.08999 * 109.47701 * 299.99947 * 1 2 3 24 24 H 1.09007 * 109.47117 * 60.00386 * 1 2 3 25 25 H 1.09006 * 109.47611 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47533 * 239.99661 * 2 1 3 27 27 H 1.08997 * 109.46752 * 299.99906 * 3 2 1 28 28 H 1.08993 * 109.46917 * 59.99661 * 3 2 1 29 29 H 1.08995 * 109.47145 * 180.02562 * 3 2 1 30 30 H 1.07998 * 120.02667 * 359.97438 * 6 5 4 31 31 H 1.07997 * 119.95814 * 180.27102 * 7 6 5 32 32 H 1.08999 * 109.47593 * 149.72641 * 9 8 7 33 33 H 1.09005 * 109.47318 * 29.72038 * 9 8 7 34 34 H 1.09001 * 109.47410 * 60.00130 * 10 9 8 35 35 H 1.09001 * 109.47289 * 299.99598 * 10 9 8 36 36 H 1.09001 * 109.46948 * 59.99651 * 11 10 9 37 37 H 1.09001 * 109.46860 * 300.00195 * 11 10 9 38 38 H 0.97000 * 120.00102 * 180.02562 * 15 14 12 39 39 H 1.07997 * 119.98305 * 180.24862 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2467 -1.2250 1.0979 6 6 4.0352 -1.0233 -0.0253 7 6 5.2982 -1.5797 -0.0905 8 6 5.7725 -2.3466 0.9577 9 6 7.1481 -2.9572 0.8807 10 6 7.0543 -4.3477 0.2494 11 6 8.4510 -4.9674 0.1707 12 6 8.3586 -6.3372 -0.4506 13 1 7.3996 -6.7267 -0.7588 14 6 9.4983 -7.0932 -0.6254 15 7 10.6660 -6.6191 -0.2496 16 14 9.3835 -8.7916 -1.3949 17 1 8.8150 -8.6782 -2.7620 18 1 10.7392 -9.3929 -1.4714 19 1 8.5054 -9.6533 -0.5635 20 6 4.9893 -2.5497 2.0787 21 6 3.7269 -1.9905 2.1516 22 17 2.7438 -2.2449 3.5596 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9562 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1299 1.4424 -0.0005 30 1 3.6640 -0.4282 -0.8465 31 1 5.9138 -1.4191 -0.9632 32 1 7.5651 -3.0412 1.8843 33 1 7.7930 -2.3242 0.2711 34 1 6.6374 -4.2638 -0.7542 35 1 6.4095 -4.9808 0.8590 36 1 8.8684 -5.0512 1.1741 37 1 9.0955 -4.3342 -0.4391 38 1 11.4679 -7.1508 -0.3730 39 1 5.3636 -3.1458 2.8978 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098128974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = -52.264219 kcal Electronic energy + Delta-G solvation = -19128.836070 eV Core-core repulsion = 16061.485833 eV Total energy + Delta-G solvation = -3067.350237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45264 -38.20855 -36.41684 -34.57790 -33.42165 -32.29115 -30.79781 -29.75007 -27.64122 -26.50918 -23.86110 -23.27041 -21.72648 -20.76303 -20.00750 -18.49320 -16.41813 -16.29925 -15.72380 -15.60174 -14.78844 -14.52020 -14.42227 -14.09861 -13.66244 -13.47605 -13.16673 -12.71450 -12.64351 -12.43448 -12.37106 -12.11329 -11.64778 -11.60314 -11.37240 -11.21035 -10.99567 -10.93267 -10.76547 -10.70688 -10.49922 -10.46322 -9.67007 -9.32625 -9.09133 -8.83562 -8.32943 -7.97214 -5.98312 -4.00536 1.17314 1.34962 2.22086 2.96548 3.34534 3.38700 3.41488 3.64017 4.44119 4.47530 4.56636 4.66663 4.78993 4.89277 5.06308 5.19593 5.29403 5.33515 5.37337 5.38612 5.44411 5.50028 5.65197 5.75911 5.82949 5.92095 6.03359 6.09568 6.22173 6.33688 6.50387 6.71224 6.86048 6.89983 7.14060 7.24254 7.69406 7.84135 8.02074 8.45052 9.06560 9.63426 11.12959 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024371 B = 0.003104 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.640310 B = 9017.735791 C = 9350.531175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 C -0.180 4.180 4 O -0.302 6.302 5 C 0.125 3.875 6 C -0.198 4.198 7 C -0.075 4.075 8 C -0.088 4.088 9 C -0.081 4.081 10 C -0.104 4.104 11 C 0.021 3.979 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.073 4.073 21 C -0.065 4.065 22 Cl -0.067 7.067 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.977 16.123 1.665 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 C -0.238 4.238 4 O -0.216 6.216 5 C 0.079 3.921 6 C -0.217 4.217 7 C -0.093 4.093 8 C -0.088 4.088 9 C -0.118 4.118 10 C -0.141 4.141 11 C -0.016 4.016 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.092 4.092 21 C -0.092 4.092 22 Cl -0.038 7.038 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.025 16.065 1.957 24.224 hybrid contribution 0.019 -0.924 -0.538 1.069 sum -18.006 15.141 1.419 23.568 Atomic orbital electron populations 1.21841 0.92429 1.03268 1.02947 1.22452 0.95461 0.92628 0.87531 1.22389 1.02325 0.95970 1.03091 1.86181 1.28821 1.68099 1.38499 1.18551 0.85516 0.94317 0.93670 1.21196 0.96080 1.06233 0.98161 1.21012 0.94680 0.95270 0.98346 1.20078 0.97911 0.97683 0.93164 1.20765 0.90774 0.98045 1.02247 1.21647 1.01166 0.92421 0.98914 1.19115 0.90268 0.95104 0.97139 1.21237 0.93275 1.01253 1.40141 0.92788 1.25022 0.95482 0.98189 0.95759 1.69952 0.98162 1.37717 1.47760 0.86673 0.77034 0.84523 0.79868 1.20264 1.21301 1.20230 1.20884 0.91054 0.98259 0.98977 1.20149 0.94291 1.04885 0.89922 1.98345 1.70329 1.95761 1.39368 0.91468 0.90564 0.91568 0.90768 0.91040 0.91410 0.91692 0.84791 0.85091 0.91185 0.91150 0.93321 0.93250 0.96562 0.96604 0.92972 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.56 37.15 0.36 -0.67 16 2 C 0.08 0.65 2.85 -26.74 -0.08 0.58 16 3 C -0.18 -1.32 9.17 37.16 0.34 -0.98 16 4 O -0.30 -3.66 9.26 -19.49 -0.18 -3.84 16 5 C 0.13 1.65 6.59 -39.20 -0.26 1.39 16 6 C -0.20 -2.37 8.25 -39.44 -0.33 -2.69 16 7 C -0.07 -0.98 9.69 -39.60 -0.38 -1.36 16 8 C -0.09 -1.29 5.13 -104.61 -0.54 -1.83 16 9 C -0.08 -1.33 5.34 -27.88 -0.15 -1.48 16 10 C -0.10 -2.11 5.14 -26.73 -0.14 -2.25 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.07 -1.05 9.48 -39.57 -0.38 -1.42 16 21 C -0.07 -0.92 6.33 -39.36 -0.25 -1.17 16 22 Cl -0.07 -0.89 28.50 -51.86 -1.48 -2.37 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.61 6.31 -51.93 -0.33 0.28 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.52 6.91 -51.93 -0.36 0.16 16 30 H 0.13 1.26 5.43 -52.49 -0.29 0.98 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 33 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -30.76 339.25 -9.18 -39.94 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -6.00 Total: -4.21 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -2.34 Total: -25.10 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.18 Total: -3.84 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.48 Total: -2.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.76 -9.18 -39.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098128974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.329 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds