Wall clock time and date at job start Tue Mar 31 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46963 * 2 1 4 4 C 1.52999 * 109.47229 * 120.00329 * 2 1 3 5 5 C 1.53002 * 109.47227 * 174.99992 * 4 2 1 6 6 N 1.46496 * 109.47275 * 179.97438 * 5 4 2 7 7 C 1.46502 * 120.00294 * 270.00088 * 6 5 4 8 8 C 1.50699 * 109.47320 * 265.20726 * 7 6 5 9 9 H 1.08000 * 119.99925 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99837 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00279 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99712 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47181 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47249 * 119.99903 * 12 10 8 15 15 H 1.48500 * 109.47209 * 239.99933 * 12 10 8 16 16 C 1.34777 * 119.99658 * 90.00003 * 6 5 4 17 17 O 1.21623 * 120.00087 * 354.61062 * 16 6 5 18 18 C 1.47274 * 119.99704 * 174.88816 * 16 6 5 19 19 C 1.35203 * 123.13991 * 173.60931 * 18 16 6 20 20 S 1.70941 * 108.82806 * 179.90360 * 19 18 16 21 21 C 1.70769 * 91.12885 * 0.29618 * 20 19 18 22 22 N 1.28652 * 110.55788 * 359.82653 * 21 20 19 23 23 H 1.09003 * 109.47438 * 300.00017 * 1 2 3 24 24 H 1.09002 * 109.47443 * 59.99840 * 1 2 3 25 25 H 1.09004 * 109.47555 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47438 * 239.99983 * 2 1 3 27 27 H 1.09000 * 109.46801 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47232 * 299.99775 * 3 2 1 29 29 H 1.08996 * 109.46805 * 60.00394 * 3 2 1 30 30 H 1.09000 * 109.47515 * 54.99538 * 4 2 1 31 31 H 1.09003 * 109.46925 * 294.99757 * 4 2 1 32 32 H 1.09004 * 109.46859 * 60.00001 * 5 4 2 33 33 H 1.08996 * 109.47329 * 299.99784 * 5 4 2 34 34 H 1.09000 * 109.46933 * 25.20988 * 7 6 5 35 35 H 1.09000 * 109.46954 * 145.20376 * 7 6 5 36 36 H 0.97004 * 119.99964 * 179.97438 * 11 10 8 37 37 H 1.08001 * 125.58846 * 0.02562 * 19 18 16 38 38 H 1.08002 * 124.72502 * 179.82095 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0532 -1.5212 2.3843 7 6 4.4017 -0.7531 3.5821 8 6 5.8803 -0.4621 3.5798 9 1 6.4987 -0.8145 2.7675 10 6 6.4437 0.2530 4.6152 11 7 5.6908 0.6817 5.6046 12 14 8.2768 0.6131 4.6127 13 1 8.8951 0.0252 3.3972 14 1 8.4927 2.0822 4.6172 15 1 8.8999 0.0174 5.8219 16 6 4.1819 -2.8628 2.3829 17 8 3.8013 -3.5093 1.4257 18 6 4.7780 -3.5465 3.5432 19 6 4.8242 -4.8922 3.6647 20 16 5.5914 -5.2869 5.1404 21 6 5.7983 -3.6335 5.5140 22 7 5.3184 -2.8950 4.5763 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1584 2.1369 32 1 3.9994 0.1675 1.1420 33 1 3.8532 -1.3940 0.3002 34 1 3.8467 0.1851 3.5863 35 1 4.1463 -1.3302 4.4708 36 1 6.0873 1.1845 6.3332 37 1 4.4411 -5.6017 2.9462 38 1 6.2668 -3.2597 6.4125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103439946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:21 Heat of formation + Delta-G solvation = 7.027030 kcal Electronic energy + Delta-G solvation = -20483.134043 eV Core-core repulsion = 17452.691325 eV Total energy + Delta-G solvation = -3030.442718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92339 -38.04376 -36.45833 -34.66343 -32.36947 -30.14745 -29.21643 -27.02986 -26.76666 -25.38886 -23.18576 -22.93889 -20.91197 -19.68824 -18.61707 -17.60273 -16.38971 -15.88514 -15.59037 -14.87940 -14.72114 -14.51213 -14.22439 -13.75993 -13.57855 -13.04423 -12.87104 -12.53744 -12.43846 -12.19648 -12.03881 -11.62713 -11.59654 -11.28664 -11.04516 -10.82152 -10.76087 -10.61249 -10.44567 -10.17603 -10.01977 -9.57510 -9.33287 -9.17598 -8.65285 -8.53877 -8.26819 -7.61719 -5.97190 -3.95346 1.04261 1.77442 2.11278 2.76271 3.28425 3.37037 3.41900 3.96740 4.09451 4.47743 4.83179 5.09314 5.15171 5.17895 5.39096 5.47250 5.65248 5.67519 5.75638 5.80782 5.88978 5.92779 6.01903 6.03790 6.14009 6.27942 6.33921 6.42339 6.45042 6.66076 6.71654 6.89682 7.49662 7.71885 7.93737 8.18343 8.31771 8.37533 8.93356 9.06336 9.64128 11.11446 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.007056 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.017208 B = 3967.443142 C = 5766.824721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.578 5.578 7 C 0.238 3.762 8 C -0.490 4.490 9 H 0.051 0.949 10 C 0.068 3.932 11 N -0.893 5.893 12 Si 0.884 3.116 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.586 3.414 17 O -0.572 6.572 18 C 0.022 3.978 19 C -0.233 4.233 20 S 0.131 5.869 21 C 0.000 4.000 22 N -0.358 5.358 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.063 0.937 36 H 0.258 0.742 37 H 0.180 0.820 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 -6.009 -2.954 8.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.306 5.306 7 C 0.119 3.881 8 C -0.529 4.529 9 H 0.069 0.931 10 C -0.133 4.133 11 N -0.534 5.534 12 Si 0.712 3.288 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.211 1.211 16 C 0.371 3.629 17 O -0.454 6.454 18 C -0.114 4.114 19 C -0.375 4.375 20 S 0.385 5.615 21 C -0.301 4.301 22 N -0.069 5.069 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.197 0.803 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.534 -6.482 -2.702 8.359 hybrid contribution 0.885 0.820 -0.469 1.295 sum -3.649 -5.661 -3.171 7.444 Atomic orbital electron populations 1.21820 0.95598 1.01435 1.01333 1.21045 0.95372 0.96356 0.98455 1.21905 1.01632 0.95831 1.01317 1.21992 0.96379 1.00564 0.97663 1.21425 0.93182 0.97661 0.88102 1.48198 1.60867 1.05464 1.16024 1.19774 0.95923 0.90878 0.81567 1.21224 0.92959 1.32536 1.06218 0.93115 1.24724 0.97125 0.96073 0.95354 1.69933 1.34869 1.38082 1.10466 0.86673 0.86437 0.77838 0.77810 1.20120 1.21224 1.21132 1.17147 0.78437 0.82506 0.84775 1.90692 1.52626 1.66187 1.35875 1.20702 1.04078 0.89736 0.96850 1.26437 1.07678 0.99911 1.03443 1.82600 1.52065 1.14098 1.12759 1.28842 1.05814 0.91440 1.03962 1.67792 1.06687 1.33319 0.99132 0.92784 0.93086 0.92921 0.91349 0.92098 0.93255 0.92584 0.91929 0.91731 0.90120 0.91265 0.95474 0.91942 0.93197 0.80315 0.78681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 37.15 0.34 -1.35 16 2 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 3 C -0.15 -1.91 8.95 37.16 0.33 -1.57 16 4 C -0.13 -2.09 5.01 -26.73 -0.13 -2.22 16 5 C 0.12 2.27 5.10 -4.04 -0.02 2.25 16 6 N -0.58 -12.83 2.47 -176.39 -0.44 -13.27 16 7 C 0.24 5.88 4.74 -5.19 -0.02 5.85 16 8 C -0.49 -13.01 7.62 -34.44 -0.26 -13.27 16 9 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 10 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 11 N -0.89 -24.76 13.29 55.43 0.74 -24.03 16 12 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 C 0.59 13.16 7.60 -12.59 -0.10 13.07 16 17 O -0.57 -13.26 16.36 5.26 0.09 -13.17 16 18 C 0.02 0.46 6.41 -84.52 -0.54 -0.09 16 19 C -0.23 -3.95 10.62 29.65 0.31 -3.63 16 20 S 0.13 1.80 22.97 -107.50 -2.47 -0.67 16 21 C 0.00 0.00 12.17 51.43 0.63 0.63 16 22 N -0.36 -7.66 5.67 -12.36 -0.07 -7.73 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.51 6.49 -51.93 -0.34 1.17 16 33 H 0.07 1.32 7.50 -51.93 -0.39 0.93 16 34 H 0.03 0.70 8.04 -51.93 -0.42 0.29 16 35 H 0.06 1.64 5.77 -51.93 -0.30 1.34 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.18 2.75 8.04 -52.49 -0.42 2.33 16 38 H 0.20 2.95 8.06 -52.49 -0.42 2.52 16 LS Contribution 329.11 15.07 4.96 4.96 Total: -1.00 -30.05 329.11 -7.59 -37.64 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.56 Total: 0.37 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 0.17 Total: -0.13 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.23 Total: -45.02 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.47 Total: -0.67 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.05 -7.59 -37.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.670 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds