Wall clock time and date at job start Tue Mar 31 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46963 * 2 1 4 4 C 1.52999 * 109.47229 * 120.00329 * 2 1 3 5 5 C 1.53002 * 109.47227 * 174.99992 * 4 2 1 6 6 N 1.46496 * 109.47275 * 179.97438 * 5 4 2 7 7 C 1.46502 * 120.00294 * 270.00088 * 6 5 4 8 8 C 1.50699 * 109.47320 * 265.20726 * 7 6 5 9 9 H 1.08000 * 119.99925 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99837 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00279 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99712 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47181 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47249 * 119.99903 * 12 10 8 15 15 H 1.48500 * 109.47209 * 239.99933 * 12 10 8 16 16 C 1.34777 * 119.99658 * 90.00003 * 6 5 4 17 17 O 1.21623 * 120.00087 * 354.61062 * 16 6 5 18 18 C 1.47274 * 119.99704 * 174.88816 * 16 6 5 19 19 C 1.35203 * 123.13991 * 173.60931 * 18 16 6 20 20 S 1.70941 * 108.82806 * 179.90360 * 19 18 16 21 21 C 1.70769 * 91.12885 * 0.29618 * 20 19 18 22 22 N 1.28652 * 110.55788 * 359.82653 * 21 20 19 23 23 H 1.09003 * 109.47438 * 300.00017 * 1 2 3 24 24 H 1.09002 * 109.47443 * 59.99840 * 1 2 3 25 25 H 1.09004 * 109.47555 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47438 * 239.99983 * 2 1 3 27 27 H 1.09000 * 109.46801 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47232 * 299.99775 * 3 2 1 29 29 H 1.08996 * 109.46805 * 60.00394 * 3 2 1 30 30 H 1.09000 * 109.47515 * 54.99538 * 4 2 1 31 31 H 1.09003 * 109.46925 * 294.99757 * 4 2 1 32 32 H 1.09004 * 109.46859 * 60.00001 * 5 4 2 33 33 H 1.08996 * 109.47329 * 299.99784 * 5 4 2 34 34 H 1.09000 * 109.46933 * 25.20988 * 7 6 5 35 35 H 1.09000 * 109.46954 * 145.20376 * 7 6 5 36 36 H 0.97004 * 119.99964 * 179.97438 * 11 10 8 37 37 H 1.08001 * 125.58846 * 0.02562 * 19 18 16 38 38 H 1.08002 * 124.72502 * 179.82095 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0532 -1.5212 2.3843 7 6 4.4017 -0.7531 3.5821 8 6 5.8803 -0.4621 3.5798 9 1 6.4987 -0.8145 2.7675 10 6 6.4437 0.2530 4.6152 11 7 5.6908 0.6817 5.6046 12 14 8.2768 0.6131 4.6127 13 1 8.8951 0.0252 3.3972 14 1 8.4927 2.0822 4.6172 15 1 8.8999 0.0174 5.8219 16 6 4.1819 -2.8628 2.3829 17 8 3.8013 -3.5093 1.4257 18 6 4.7780 -3.5465 3.5432 19 6 4.8242 -4.8922 3.6647 20 16 5.5914 -5.2869 5.1404 21 6 5.7983 -3.6335 5.5140 22 7 5.3184 -2.8950 4.5763 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1584 2.1369 32 1 3.9994 0.1675 1.1420 33 1 3.8532 -1.3940 0.3002 34 1 3.8467 0.1851 3.5863 35 1 4.1463 -1.3302 4.4708 36 1 6.0873 1.1845 6.3332 37 1 4.4411 -5.6017 2.9462 38 1 6.2668 -3.2597 6.4125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103439946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:20 Heat of formation + Delta-G solvation = -9.742620 kcal Electronic energy + Delta-G solvation = -20483.861230 eV Core-core repulsion = 17452.691325 eV Total energy + Delta-G solvation = -3031.169905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48059 -39.56890 -37.83039 -36.31737 -34.34204 -31.57034 -30.70087 -28.71558 -27.99004 -26.77860 -24.90855 -24.58689 -22.41484 -20.87651 -20.07016 -19.17077 -18.39037 -17.52012 -17.10715 -16.43987 -16.25783 -15.98463 -15.86812 -15.05220 -14.90202 -14.46288 -14.27796 -14.15003 -14.06108 -13.72527 -13.33400 -13.13858 -12.92788 -12.74070 -12.68438 -12.58438 -12.24797 -12.07368 -11.82773 -11.60693 -11.53380 -11.39932 -11.03104 -10.58366 -10.39635 -10.00843 -9.81457 -9.37614 -8.02216 -6.06635 -0.32024 0.52834 0.78908 1.22809 1.39413 1.43040 1.52275 2.33278 2.47777 2.55116 3.29841 3.42239 3.88472 3.94001 4.04470 4.08492 4.28897 4.34103 4.48154 4.55774 4.65476 4.76789 4.82491 4.90448 4.95901 5.00837 5.05557 5.12892 5.17381 5.30305 5.47085 5.48616 5.52161 5.83370 5.91475 6.28154 6.53803 6.79717 6.98032 7.28909 7.56278 9.05980 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.007056 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.017208 B = 3967.443142 C = 5766.824721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.115 4.115 5 C 0.117 3.883 6 N -0.586 5.586 7 C 0.259 3.741 8 C -0.490 4.490 9 H 0.031 0.969 10 C 0.033 3.967 11 N -0.919 5.919 12 Si 0.939 3.061 13 H -0.282 1.282 14 H -0.282 1.282 15 H -0.275 1.275 16 C 0.578 3.422 17 O -0.589 6.589 18 C -0.022 4.022 19 C -0.236 4.236 20 S 0.268 5.732 21 C -0.027 4.027 22 N -0.410 5.410 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.006 0.994 35 H 0.051 0.949 36 H 0.261 0.739 37 H 0.194 0.806 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.226 -7.234 -2.716 8.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.154 4.154 5 C -0.006 4.006 6 N -0.314 5.314 7 C 0.139 3.861 8 C -0.529 4.529 9 H 0.049 0.951 10 C -0.166 4.166 11 N -0.560 5.560 12 Si 0.766 3.234 13 H -0.208 1.208 14 H -0.208 1.208 15 H -0.201 1.201 16 C 0.365 3.635 17 O -0.473 6.473 18 C -0.157 4.157 19 C -0.379 4.379 20 S 0.524 5.476 21 C -0.326 4.326 22 N -0.123 5.123 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.211 0.789 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.110 -7.713 -2.454 9.078 hybrid contribution 0.773 1.015 -0.494 1.368 sum -3.337 -6.698 -2.948 8.043 Atomic orbital electron populations 1.21788 0.93908 1.01780 1.02334 1.21038 0.96744 0.96346 0.96718 1.21885 1.00889 0.95488 1.02204 1.21875 0.94363 1.00108 0.99029 1.21564 0.94905 0.97109 0.86972 1.48225 1.61241 1.05777 1.16107 1.19338 0.94729 0.89768 0.82289 1.21183 0.93547 1.32491 1.05697 0.95054 1.25263 1.00487 0.95888 0.94974 1.70019 1.36303 1.38709 1.10961 0.85812 0.82234 0.77643 0.77663 1.20765 1.20838 1.20088 1.17549 0.78132 0.82421 0.85445 1.90649 1.53624 1.66306 1.36712 1.20545 1.06957 0.91061 0.97164 1.26861 1.06480 0.98982 1.05535 1.82065 1.48052 1.09057 1.08466 1.29093 1.05423 0.94330 1.03763 1.67703 1.08391 1.35925 1.00264 0.92850 0.91012 0.92943 0.90909 0.93261 0.90962 0.93073 0.93199 0.92798 0.90361 0.91528 0.97582 0.93145 0.93012 0.78921 0.77348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.19 71.98 0.66 -2.45 16 2 C -0.09 -2.36 2.92 -10.80 -0.03 -2.39 16 3 C -0.15 -3.67 8.95 71.98 0.64 -3.03 16 4 C -0.12 -3.90 5.01 30.59 0.15 -3.75 16 5 C 0.12 4.63 5.10 86.38 0.44 5.07 16 6 N -0.59 -27.17 2.47 -830.21 -2.05 -29.22 16 7 C 0.26 13.36 4.74 85.63 0.41 13.76 16 8 C -0.49 -26.75 7.62 25.60 0.19 -26.56 16 9 H 0.03 1.80 7.81 -2.91 -0.02 1.78 16 10 C 0.03 1.76 5.46 84.65 0.46 2.23 16 11 N -0.92 -51.54 13.29 21.45 0.28 -51.25 16 12 Si 0.94 43.34 29.54 68.60 2.03 45.36 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 C 0.58 26.75 7.60 86.62 0.66 27.41 16 17 O -0.59 -27.93 16.36 -4.10 -0.07 -27.99 16 18 C -0.02 -0.90 6.41 40.56 0.26 -0.64 16 19 C -0.24 -7.61 10.62 67.12 0.71 -6.90 16 20 S 0.27 6.46 22.97 -56.49 -1.30 5.16 16 21 C -0.03 -0.88 12.17 130.71 1.59 0.71 16 22 N -0.41 -17.69 5.67 -193.02 -1.09 -18.78 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.05 1.32 6.56 -2.39 -0.02 1.31 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 3.08 6.49 -2.38 -0.02 3.06 16 33 H 0.07 2.64 7.50 -2.39 -0.02 2.62 16 34 H 0.01 0.34 8.04 -2.39 -0.02 0.32 16 35 H 0.05 2.76 5.77 -2.39 -0.01 2.75 16 36 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 37 H 0.19 5.54 8.04 -2.91 -0.02 5.52 16 38 H 0.21 6.00 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -66.06 329.11 5.00 -61.06 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 1.04 Total: 12.20 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.15 Total: 3.46 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -2.86 Total: -99.26 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.07 Total: -27.99 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 6.46 SS G_CDS: -1.30 Total: 5.16 kcal Total: -66.06 5.00 -61.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.317 kcal (2) G-P(sol) polarization free energy of solvation -66.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds