Wall clock time and date at job start Tue Mar 31 2020 06:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52996 * 109.46911 * 2 1 4 4 N 1.46495 * 109.47070 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00060 * 82.89204 * 4 3 2 6 6 H 1.08000 * 119.99856 * 170.81736 * 5 4 3 7 7 C 1.38810 * 120.00180 * 350.81760 * 5 4 3 8 8 N 1.31617 * 119.99880 * 1.54691 * 7 5 4 9 9 Si 1.86799 * 120.00056 * 181.54830 * 7 5 4 10 10 H 1.48507 * 109.47055 * 89.99998 * 9 7 5 11 11 H 1.48501 * 109.47207 * 209.99828 * 9 7 5 12 12 H 1.48502 * 109.47073 * 330.00150 * 9 7 5 13 13 C 1.46501 * 120.00232 * 262.89530 * 4 3 2 14 14 C 1.50697 * 109.47478 * 96.70495 * 13 4 3 15 15 C 1.38488 * 120.01010 * 85.36670 * 14 13 4 16 16 F 1.35098 * 120.02359 * 359.96250 * 15 14 13 17 17 C 1.38434 * 119.94656 * 179.97438 * 15 14 13 18 18 C 1.38216 * 119.97720 * 0.02562 * 17 15 14 19 19 C 1.38222 * 120.02594 * 359.97438 * 18 17 15 20 20 C 1.38173 * 120.01898 * 265.34964 * 14 13 4 21 21 N 1.48007 * 119.98346 * 0.02562 * 20 14 13 22 22 O 1.21798 * 119.99894 * 186.83368 * 21 20 14 23 23 O 1.21799 * 120.00282 * 6.83756 * 21 20 14 24 24 H 1.09002 * 109.46781 * 299.99858 * 1 2 3 25 25 H 1.09001 * 109.47040 * 59.99805 * 1 2 3 26 26 H 1.08995 * 109.46975 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46781 * 240.00142 * 2 1 3 28 28 H 1.08992 * 109.47180 * 120.00045 * 2 1 3 29 29 H 1.09002 * 109.47282 * 60.00449 * 3 2 1 30 30 H 1.09001 * 109.47428 * 299.99957 * 3 2 1 31 31 H 0.96996 * 120.00345 * 179.97438 * 8 7 5 32 32 H 1.09008 * 109.46938 * 336.71097 * 13 4 3 33 33 H 1.08995 * 109.47714 * 216.71296 * 13 4 3 34 34 H 1.08001 * 120.00699 * 180.02562 * 17 15 14 35 35 H 1.07996 * 119.98784 * 179.97438 * 18 17 15 36 36 H 1.08002 * 119.97439 * 179.72656 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1892 1.2960 -1.1777 6 1 5.2588 1.4434 -1.2026 7 6 3.5081 0.9580 -2.3390 8 7 2.2007 0.8082 -2.3152 9 14 4.4470 0.7157 -3.9356 10 1 4.8568 -0.7065 -4.0580 11 1 3.5764 1.0802 -5.0821 12 1 5.6542 1.5805 -3.9361 13 6 4.2381 1.5993 1.2581 14 6 4.6332 0.2426 1.7817 15 6 5.8002 -0.3577 1.3392 16 9 6.5845 0.2723 0.4375 17 6 6.1622 -1.6038 1.8215 18 6 5.3585 -2.2477 2.7434 19 6 4.1940 -1.6476 3.1843 20 6 3.8316 -0.4029 2.7036 21 7 2.5843 0.2382 3.1765 22 8 1.9423 -0.2700 4.0782 23 8 2.1996 1.2740 2.6639 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.7246 0.5724 -3.1267 32 1 3.6025 2.0997 1.9888 33 1 5.1331 2.1969 1.0854 34 1 7.0723 -2.0726 1.4774 35 1 5.6406 -3.2200 3.1194 36 1 3.5644 -2.1534 3.9013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103469468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:56 Heat of formation + Delta-G solvation = 24.415042 kcal Electronic energy + Delta-G solvation = -23779.821553 eV Core-core repulsion = 20183.919659 eV Total energy + Delta-G solvation = -3595.901894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.48321 -41.42671 -38.60751 -36.74113 -35.62854 -32.78070 -31.90454 -31.07437 -30.11863 -26.60035 -25.80434 -25.26814 -22.58963 -22.00001 -21.05268 -20.09846 -18.54743 -17.99540 -17.18675 -16.83515 -16.09781 -15.87136 -15.65121 -15.41383 -14.97493 -13.87590 -13.78741 -13.57551 -13.19527 -12.97396 -12.26223 -12.20583 -12.07635 -11.77599 -11.67215 -11.35650 -11.19548 -10.98772 -10.69575 -10.51301 -10.40698 -10.27682 -10.10370 -9.93853 -9.56701 -9.44199 -9.03077 -8.57771 -8.42961 -7.21983 -6.11494 -3.30211 0.31270 1.32994 1.95311 2.22838 3.15599 3.21733 3.22963 3.64402 4.12133 4.54540 4.85163 4.95888 5.04338 5.12753 5.27098 5.42128 5.66070 5.93069 6.09236 6.22195 6.26320 6.30988 6.31595 6.48413 6.53577 6.60895 6.79097 6.90923 6.98222 7.19152 7.28843 7.30672 7.38448 7.62833 7.95660 8.08750 8.57361 8.79945 9.35370 9.77961 10.69995 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.009114 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.631549 B = 3071.426784 C = 4176.912761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C 0.159 3.841 4 N -0.542 5.542 5 C -0.213 4.213 6 H 0.091 0.909 7 C -0.011 4.011 8 N -0.856 5.856 9 Si 0.922 3.078 10 H -0.283 1.283 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.145 3.855 14 C -0.085 4.085 15 C 0.118 3.882 16 F -0.125 7.125 17 C -0.127 4.127 18 C -0.127 4.127 19 C -0.067 4.067 20 C -0.035 4.035 21 N 0.051 4.949 22 O -0.230 6.230 23 O -0.171 6.171 24 H 0.036 0.964 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.091 0.909 28 H 0.002 0.998 29 H 0.041 0.959 30 H 0.102 0.898 31 H 0.261 0.739 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.725 -3.397 5.866 8.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C 0.036 3.964 4 N -0.254 5.254 5 C -0.343 4.343 6 H 0.109 0.891 7 C -0.212 4.212 8 N -0.499 5.499 9 Si 0.750 3.250 10 H -0.210 1.210 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.018 3.982 14 C -0.097 4.097 15 C 0.097 3.903 16 F -0.104 7.104 17 C -0.148 4.148 18 C -0.148 4.148 19 C -0.087 4.087 20 C -0.125 4.125 21 N 0.546 4.454 22 O -0.424 6.424 23 O -0.375 6.375 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.021 0.979 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.982 -3.543 5.441 8.184 hybrid contribution 0.236 -0.521 -0.945 1.104 sum 5.218 -4.063 4.496 7.997 Atomic orbital electron populations 1.21573 0.98192 0.99052 1.00451 1.22144 0.93425 1.00073 0.99737 1.21542 0.79323 0.95285 1.00297 1.45263 1.03652 1.76010 1.00441 1.20036 0.93597 1.35684 0.84987 0.89100 1.25218 0.96209 1.00191 0.99583 1.70333 1.05905 1.46167 1.27447 0.85943 0.79019 0.78492 0.81551 1.20966 1.21007 1.19858 1.20944 0.97796 0.89592 0.89851 1.20762 0.91116 1.05955 0.91841 1.17104 0.90026 0.91767 0.91446 1.91508 1.72525 1.81822 1.64513 1.21267 1.01473 0.93369 0.98730 1.20573 0.94316 1.00647 0.99301 1.20800 0.96789 0.92601 0.98487 1.20173 0.90347 0.96862 1.05088 1.43386 1.02095 1.00701 0.99244 1.94420 1.56784 1.67603 1.23615 1.94351 1.72891 1.12212 1.58002 0.94506 0.92763 0.95298 0.89078 0.97893 0.94153 0.88004 0.92726 0.87617 0.92507 0.84511 0.84351 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.91 37.16 0.37 -2.42 16 2 C -0.11 -2.68 5.19 -26.73 -0.14 -2.82 16 3 C 0.16 3.74 4.31 -4.05 -0.02 3.72 16 4 N -0.54 -12.71 2.55 -174.61 -0.44 -13.16 16 5 C -0.21 -5.24 9.49 -15.06 -0.14 -5.38 16 6 H 0.09 2.20 6.83 -52.49 -0.36 1.84 16 7 C -0.01 -0.28 5.25 -17.43 -0.09 -0.37 16 8 N -0.86 -21.36 7.15 55.49 0.40 -20.96 16 9 Si 0.92 19.83 29.55 -169.99 -5.02 14.81 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.14 3.01 5.11 -5.19 -0.03 2.99 16 14 C -0.08 -1.67 5.41 -104.56 -0.57 -2.23 16 15 C 0.12 2.14 7.24 -39.42 -0.29 1.85 16 16 F -0.13 -2.38 15.30 2.25 0.03 -2.34 16 17 C -0.13 -1.87 10.03 -39.52 -0.40 -2.27 16 18 C -0.13 -1.72 10.04 -39.60 -0.40 -2.12 16 19 C -0.07 -1.07 9.56 -39.58 -0.38 -1.45 16 20 C -0.03 -0.67 5.96 -79.97 -0.48 -1.14 16 21 N 0.05 1.06 3.77 33.95 0.13 1.19 16 22 O -0.23 -4.78 18.47 -29.46 -0.54 -5.32 16 23 O -0.17 -3.69 11.23 -29.46 -0.33 -4.02 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 2.37 5.81 -51.93 -0.30 2.06 16 28 H 0.00 0.06 6.05 -51.93 -0.31 -0.26 16 29 H 0.04 0.94 5.51 -51.93 -0.29 0.65 16 30 H 0.10 2.59 5.93 -51.93 -0.31 2.29 16 31 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 32 H 0.11 2.19 4.87 -52.43 -0.26 1.93 16 33 H 0.06 1.14 7.73 -51.93 -0.40 0.74 16 34 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.14 2.00 7.63 -52.49 -0.40 1.60 16 LS Contribution 296.07 15.07 4.46 4.46 Total: -1.00 -26.09 296.07 -7.75 -33.84 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -3.87 Total: 3.14 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.55 Total: -11.64 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.08 Total: -32.92 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.87 Total: -9.34 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.03 Total: -2.34 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.09 -7.75 -33.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103469468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.257 kcal (2) G-P(sol) polarization free energy of solvation -26.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds