Wall clock time and date at job start Tue Mar 31 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47189 * 2 1 4 4 N 1.46504 * 109.47211 * 120.00133 * 2 1 3 5 5 C 1.36536 * 119.79875 * 300.00136 * 4 2 1 6 6 C 1.35011 * 119.29628 * 180.27467 * 5 4 2 7 7 C 1.41864 * 118.93654 * 359.49262 * 6 5 4 8 8 O 1.22169 * 120.21283 * 180.24927 * 7 6 5 9 9 N 1.33977 * 119.56837 * 0.50742 * 7 6 5 10 10 C 1.31835 * 120.68087 * 359.76039 * 9 7 6 11 11 S 1.76197 * 119.44219 * 179.97438 * 10 9 7 12 12 C 1.80996 * 99.99991 * 359.97438 * 11 10 9 13 13 C 1.53001 * 109.47210 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47068 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46970 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99751 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00134 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99637 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47248 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46977 * 120.00305 * 19 17 15 22 22 H 1.48500 * 109.47057 * 239.99596 * 19 17 15 23 23 H 1.08997 * 109.47103 * 300.00264 * 1 2 3 24 24 H 1.09007 * 109.47175 * 59.99986 * 1 2 3 25 25 H 1.08994 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47555 * 240.00019 * 2 1 3 27 27 H 1.08998 * 109.46978 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46978 * 299.99885 * 3 2 1 29 29 H 1.09004 * 109.47144 * 60.00187 * 3 2 1 30 30 H 1.08002 * 120.34927 * 359.97438 * 5 4 2 31 31 H 1.07993 * 120.52897 * 179.74373 * 6 5 4 32 32 H 1.08998 * 109.47060 * 300.00040 * 12 11 10 33 33 H 1.09000 * 109.47477 * 59.99705 * 12 11 10 34 34 H 1.08992 * 109.46859 * 299.99709 * 13 12 11 35 35 H 1.08993 * 109.47156 * 60.00209 * 13 12 11 36 36 H 1.08998 * 109.47367 * 300.00192 * 14 13 12 37 37 H 1.09008 * 109.47163 * 60.00220 * 14 13 12 38 38 H 0.97003 * 120.00056 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6859 -0.2207 2.4343 6 6 2.1461 -0.8617 3.5297 7 6 2.9552 -2.0148 3.3610 8 8 3.3803 -2.6155 4.3361 9 7 3.2541 -2.4376 2.1254 10 6 2.8005 -1.7961 1.0667 11 16 3.2145 -2.3804 -0.5432 12 6 4.2296 -3.8137 -0.1060 13 6 4.7166 -4.5022 -1.3826 14 6 5.5752 -5.7135 -1.0131 15 6 6.0543 -6.3920 -2.2705 16 1 5.7741 -5.9989 -3.2366 17 6 6.8496 -7.5153 -2.1875 18 7 7.1904 -7.9942 -1.0111 19 14 7.4429 -8.3567 -3.7461 20 1 6.9249 -7.6265 -4.9308 21 1 8.9276 -8.3557 -3.7747 22 1 6.9484 -9.7567 -3.7717 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.0655 0.6574 2.5362 31 1 1.8990 -0.5048 4.5185 32 1 5.0878 -3.4858 0.4804 33 1 3.6354 -4.5146 0.4803 34 1 3.8581 -4.8302 -1.9686 35 1 5.3107 -3.8017 -1.9693 36 1 6.4337 -5.3851 -0.4272 37 1 4.9813 -6.4143 -0.4261 38 1 7.7496 -8.7847 -0.9527 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122640263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:43 Heat of formation + Delta-G solvation = -8.480863 kcal Electronic energy + Delta-G solvation = -19303.433088 eV Core-core repulsion = 16272.317897 eV Total energy + Delta-G solvation = -3031.115191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51318 -38.28255 -35.49789 -34.51606 -32.93202 -32.05054 -31.12784 -27.91222 -27.56900 -25.14121 -24.52897 -23.26851 -21.91556 -20.34389 -18.49283 -18.25468 -17.22599 -16.33443 -16.09539 -15.55519 -14.98558 -14.65924 -14.62729 -14.49697 -14.22194 -13.93106 -13.51978 -13.07406 -12.80273 -12.66486 -12.54141 -12.01978 -11.98000 -11.81909 -11.71335 -11.17037 -11.00430 -10.99445 -10.82746 -10.58530 -10.34531 -9.84905 -9.39401 -9.11120 -9.05626 -8.59867 -8.36604 -8.13368 -6.00169 -4.03875 0.84644 0.87693 1.05547 2.00078 2.28866 3.31551 3.39044 3.42445 3.83770 3.97401 4.10868 4.29696 4.33179 4.45522 4.54465 4.83504 4.90121 4.99050 5.09996 5.24893 5.30952 5.35417 5.43321 5.51510 5.52272 5.55155 5.57818 6.12593 6.13844 6.25660 6.44148 6.63680 6.94064 7.65053 7.68518 7.75620 7.98046 8.24663 8.37428 9.02806 9.60365 11.10920 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.003535 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.427951 B = 7917.827827 C = 8881.595723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 C -0.165 4.165 4 N -0.492 5.492 5 C 0.139 3.861 6 C -0.287 4.287 7 C 0.510 3.490 8 O -0.517 6.517 9 N -0.580 5.580 10 C 0.393 3.607 11 S -0.031 6.031 12 C -0.087 4.087 13 C -0.098 4.098 14 C 0.028 3.972 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.892 5.892 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.169 0.831 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 22.374 0.225 27.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 C -0.223 4.223 4 N -0.192 5.192 5 C 0.012 3.988 6 C -0.318 4.318 7 C 0.299 3.701 8 O -0.396 6.396 9 N -0.325 5.325 10 C 0.019 3.981 11 S 0.204 5.796 12 C -0.235 4.235 13 C -0.138 4.138 14 C -0.011 4.011 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.531 5.531 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.134 0.866 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.186 0.814 31 H 0.170 0.830 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.371 21.714 -0.154 26.604 hybrid contribution 0.138 -0.202 0.715 0.756 sum -15.233 21.512 0.562 26.365 Atomic orbital electron populations 1.22223 0.92562 1.03831 1.03643 1.21919 0.96207 0.94645 0.86720 1.22225 1.02752 0.93637 1.03640 1.44807 1.42800 1.24037 1.07575 1.22019 0.95957 0.97822 0.82977 1.23127 1.07101 1.01977 0.99606 1.17768 0.81112 0.84551 0.86674 1.90867 1.52293 1.58074 1.38343 1.69971 1.30365 1.32501 0.99690 1.25540 0.86632 0.84210 1.01743 1.85675 1.61981 1.35427 0.96506 1.24087 1.01079 0.94343 1.03968 1.21592 1.00288 0.99064 0.92869 1.19099 0.94233 0.90520 0.97226 1.21219 1.31078 1.11183 0.92671 0.92495 1.25029 0.96203 0.97159 0.96023 1.69979 1.36799 1.23281 1.23007 0.86526 0.78514 0.79424 0.83466 1.19722 1.20998 1.20993 0.91627 0.89775 0.91186 0.86598 0.91184 0.89771 0.91633 0.81359 0.82977 0.88286 0.88287 0.92214 0.92218 0.96041 0.96048 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.16 37.15 0.34 -0.32 16 2 C 0.11 0.63 3.16 -67.93 -0.21 0.42 16 3 C -0.16 -0.66 9.16 37.16 0.34 -0.32 16 4 N -0.49 -4.62 2.59 -109.86 -0.28 -4.91 16 5 C 0.14 1.17 9.12 -16.60 -0.15 1.02 16 6 C -0.29 -3.51 10.03 -39.34 -0.39 -3.91 16 7 C 0.51 9.24 7.72 -15.23 -0.12 9.12 16 8 O -0.52 -11.62 17.97 4.76 0.09 -11.53 16 9 N -0.58 -10.29 9.21 -14.70 -0.14 -10.43 16 10 C 0.39 5.32 7.79 -88.33 -0.69 4.63 16 11 S -0.03 -0.39 19.75 -107.50 -2.12 -2.52 16 12 C -0.09 -1.49 4.82 37.16 0.18 -1.32 16 13 C -0.10 -1.91 5.16 -26.73 -0.14 -2.05 16 14 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 15 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H 0.06 0.20 7.26 -51.93 -0.38 -0.18 16 24 H 0.08 0.20 8.14 -51.92 -0.42 -0.22 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.12 0.75 5.74 -46.84 -0.27 0.48 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.19 7.26 -51.93 -0.38 -0.18 16 30 H 0.17 0.63 6.91 -52.49 -0.36 0.27 16 31 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.10 1.81 8.12 -51.92 -0.42 1.39 16 33 H 0.10 1.81 8.12 -51.92 -0.42 1.39 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.58 8.14 -51.92 -0.42 0.15 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -35.96 331.96 -8.71 -44.67 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -5.57 Total: -5.05 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.39 Total: -5.48 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.32 Total: -41.56 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.12 Total: -2.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.96 -8.71 -44.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122640263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.186 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds