Wall clock time and date at job start Tue Mar 31 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47167 * 2 1 4 4 H 1.08998 * 109.47291 * 305.00014 * 3 2 1 5 5 N 1.46500 * 109.47201 * 65.00151 * 3 2 1 6 6 C 1.39922 * 119.99965 * 205.00446 * 5 3 2 7 7 C 1.38715 * 120.08241 * 359.97438 * 6 5 3 8 8 C 1.38214 * 120.02185 * 179.97438 * 7 6 5 9 9 C 1.38534 * 120.17480 * 359.97438 * 8 7 6 10 10 F 1.35093 * 119.92102 * 180.02562 * 9 8 7 11 11 C 1.38356 * 120.15729 * 0.02562 * 9 8 7 12 12 C 1.38727 * 119.97878 * 359.70145 * 11 9 8 13 13 O 1.35800 * 120.08161 * 180.29411 * 12 11 9 14 14 C 1.34798 * 117.00292 * 354.40098 * 13 12 11 15 15 H 1.07995 * 120.00058 * 5.06440 * 14 13 12 16 16 C 1.38630 * 119.99804 * 185.06568 * 14 13 12 17 17 N 1.31578 * 120.00013 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00187 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46987 * 90.00204 * 18 16 14 20 20 H 1.48494 * 109.47442 * 210.00308 * 18 16 14 21 21 H 1.48496 * 109.47163 * 330.00561 * 18 16 14 22 22 C 1.50704 * 109.47205 * 184.99747 * 3 2 1 23 23 N 1.34775 * 119.99766 * 59.99832 * 22 3 2 24 24 O 1.21281 * 119.99861 * 240.00190 * 22 3 2 25 25 H 1.09001 * 109.46379 * 59.99911 * 1 2 3 26 26 H 1.09000 * 109.47211 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47163 * 300.00382 * 1 2 3 28 28 H 1.08999 * 109.47452 * 240.00199 * 2 1 3 29 29 H 1.08999 * 109.47187 * 119.99671 * 2 1 3 30 30 H 0.97003 * 119.99726 * 24.99460 * 5 3 2 31 31 H 1.08002 * 119.98679 * 0.02562 * 7 6 5 32 32 H 1.08002 * 119.91089 * 180.02562 * 8 7 6 33 33 H 1.07998 * 120.00707 * 179.97438 * 11 9 8 34 34 H 0.97002 * 120.00169 * 180.02562 * 17 16 14 35 35 H 0.96995 * 120.00415 * 0.02562 * 23 22 3 36 36 H 0.97000 * 119.99836 * 179.72026 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 1.5208 3.4896 1.3014 7 6 1.7572 4.2513 0.1664 8 6 1.6262 5.6263 0.2166 9 6 1.2583 6.2480 1.3987 10 9 1.1313 7.5922 1.4419 11 6 1.0207 5.4954 2.5351 12 6 1.1448 4.1145 2.4905 13 8 0.9063 3.3733 3.6032 14 6 0.6664 4.0457 4.7466 15 1 0.5888 5.1228 4.7336 16 6 0.5195 3.3545 5.9393 17 7 0.2849 4.0107 7.0554 18 14 0.6531 1.4914 5.9618 19 1 2.0661 1.0993 6.1964 20 1 -0.1987 0.9471 7.0495 21 1 0.1984 0.9468 4.6573 22 6 3.5420 1.4443 -0.1238 23 7 4.1298 0.8911 -1.2030 24 8 4.2216 1.9436 0.7479 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4871 1.5660 2.0463 31 1 2.0429 3.7696 -0.7571 32 1 1.8103 6.2175 -0.6683 33 1 0.7345 5.9827 3.4555 34 1 0.1824 3.5272 7.8900 35 1 3.5862 0.4921 -1.9003 36 1 5.0963 0.8959 -1.2847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155435580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:26 Heat of formation + Delta-G solvation = -109.223516 kcal Electronic energy + Delta-G solvation = -22389.097475 eV Core-core repulsion = 18787.400578 eV Total energy + Delta-G solvation = -3601.696896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.68750 -41.32793 -40.43758 -38.35670 -36.82247 -34.76390 -34.44276 -33.34636 -31.12881 -29.68622 -27.54116 -27.22629 -23.81414 -23.09662 -22.86934 -21.08729 -20.03759 -19.54713 -18.56500 -18.04108 -17.72128 -17.22229 -16.97854 -16.51092 -15.91365 -15.80959 -15.66541 -15.58569 -15.23580 -15.09790 -14.87682 -14.59996 -14.21005 -13.71340 -13.51092 -13.29590 -13.11229 -12.94612 -12.61637 -12.25507 -12.16327 -12.01535 -11.77541 -11.55608 -11.41112 -10.92273 -10.57422 -10.55266 -9.52895 -8.49834 -8.14168 -6.19303 0.41465 0.53929 1.29042 1.35302 1.48911 1.68587 2.26385 2.31539 2.66406 2.79161 2.91785 3.10240 3.54678 3.78137 3.88201 4.02685 4.12405 4.21570 4.37279 4.41849 4.60413 4.66722 4.83547 4.92262 5.10264 5.16453 5.20607 5.30598 5.37685 5.46833 5.58115 5.84282 5.96323 6.02487 6.36344 6.58157 6.72428 6.83735 7.46063 7.54553 8.62234 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.011766 B = 0.007563 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.228441 B = 3701.329785 C = 5340.938689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.135 3.865 4 H 0.133 0.867 5 N -0.722 5.722 6 C 0.170 3.830 7 C -0.134 4.134 8 C -0.154 4.154 9 C 0.061 3.939 10 F -0.156 7.156 11 C -0.238 4.238 12 C 0.088 3.912 13 O -0.232 6.232 14 C -0.394 4.394 15 H 0.074 0.926 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.972 3.028 19 H -0.273 1.273 20 H -0.268 1.268 21 H -0.249 1.249 22 C 0.489 3.511 23 N -0.832 5.832 24 O -0.585 6.585 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.399 0.601 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.113 0.887 34 H 0.284 0.716 35 H 0.420 0.580 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 -11.345 -22.374 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.025 3.975 4 H 0.151 0.849 5 N -0.353 5.353 6 C 0.068 3.932 7 C -0.157 4.157 8 C -0.174 4.174 9 C 0.040 3.960 10 F -0.135 7.135 11 C -0.259 4.259 12 C 0.037 3.963 13 O -0.140 6.140 14 C -0.470 4.470 15 H 0.091 0.909 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.794 3.206 19 H -0.199 1.199 20 H -0.193 1.193 21 H -0.173 1.173 22 C 0.272 3.728 23 N -0.398 5.398 24 O -0.463 6.463 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.139 0.861 29 H 0.078 0.922 30 H 0.233 0.767 31 H 0.180 0.820 32 H 0.179 0.821 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.252 0.748 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.995 -11.241 -21.657 24.584 hybrid contribution 0.148 0.112 1.180 1.194 sum 3.143 -11.128 -20.477 23.517 Atomic orbital electron populations 1.21758 0.94213 1.02638 1.02268 1.21790 0.97458 0.91709 1.04668 1.21215 0.89708 0.97248 0.89282 0.84946 1.44180 1.76213 1.02154 1.12725 1.17246 0.99519 0.85226 0.91205 1.20365 1.06080 0.92426 0.96833 1.20843 1.04938 0.95028 0.96591 1.17361 1.06980 0.76344 0.95288 1.91382 1.94334 1.30457 1.97298 1.20918 1.11602 0.94100 0.99264 1.18718 1.00437 0.89668 0.87523 1.83422 1.81141 1.34441 1.14971 1.20615 1.49886 0.92837 0.83700 0.90868 1.25296 0.95642 1.05177 0.92873 1.69753 1.48862 1.38648 0.99388 0.85199 0.78590 0.77632 0.79189 1.19890 1.19319 1.17272 1.21949 0.92448 0.76737 0.81653 1.43711 1.11976 1.61160 1.22928 1.90801 1.66582 1.46675 1.42267 0.90801 0.90947 0.94746 0.86077 0.92206 0.76679 0.82020 0.82141 0.86867 0.90645 0.74824 0.76404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.80 71.98 0.71 -1.58 16 2 C -0.12 -1.65 5.42 30.60 0.17 -1.48 16 3 C 0.13 2.71 2.09 44.25 0.09 2.81 16 4 H 0.13 1.90 6.49 -2.39 -0.02 1.88 16 5 N -0.72 -23.29 4.21 -321.96 -1.36 -24.64 16 6 C 0.17 6.50 6.57 38.27 0.25 6.75 16 7 C -0.13 -4.16 9.16 22.38 0.20 -3.95 16 8 C -0.15 -5.03 10.02 22.33 0.22 -4.81 16 9 C 0.06 2.51 7.29 22.37 0.16 2.68 16 10 F -0.16 -6.31 17.26 44.97 0.78 -5.53 16 11 C -0.24 -11.50 9.14 22.41 0.20 -11.30 16 12 C 0.09 4.24 6.67 22.69 0.15 4.39 16 13 O -0.23 -12.55 7.83 -22.97 -0.18 -12.73 16 14 C -0.39 -23.80 9.95 67.91 0.68 -23.12 16 15 H 0.07 4.74 5.44 -2.91 -0.02 4.73 16 16 C 0.01 0.48 5.49 84.82 0.47 0.94 16 17 N -0.93 -56.79 13.96 21.61 0.30 -56.49 16 18 Si 0.97 45.64 28.62 68.60 1.96 47.60 16 19 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.25 -11.05 7.11 99.48 0.71 -10.35 16 22 C 0.49 11.18 7.35 87.66 0.64 11.83 16 23 N -0.83 -9.22 8.73 -173.53 -1.52 -10.74 16 24 O -0.58 -21.39 17.20 -3.03 -0.05 -21.44 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.03 0.75 7.75 -2.39 -0.02 0.73 16 28 H 0.12 0.65 7.43 -2.39 -0.02 0.64 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.40 14.41 7.97 -92.71 -0.74 13.67 16 31 H 0.16 3.56 6.19 -2.91 -0.02 3.54 16 32 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.11 6.09 5.64 -2.91 -0.02 6.07 16 34 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 35 H 0.42 1.04 8.19 -92.71 -0.76 0.28 16 36 H 0.40 4.21 8.93 -92.71 -0.83 3.38 16 Total: -1.00 -80.16 312.90 2.73 -77.44 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -1.16 Total: 23.38 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 3.95 Total: -16.85 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -2.57 Total: -91.86 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.23 Total: -34.17 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.78 Total: -5.53 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.96 Total: 47.60 kcal Total: -80.16 2.73 -77.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155435580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.787 kcal (2) G-P(sol) polarization free energy of solvation -80.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds