Wall clock time and date at job start Tue Mar 31 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47220 * 2 1 4 4 H 1.09008 * 109.47154 * 305.41557 * 3 2 1 5 5 S 1.81397 * 109.47531 * 185.41492 * 3 2 1 6 6 C 1.81407 * 102.99848 * 67.20635 * 5 3 2 7 7 C 1.52998 * 109.46824 * 174.81596 * 6 5 3 8 8 C 1.53002 * 109.47010 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47326 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99806 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99987 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46946 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47285 * 120.00037 * 13 11 9 16 16 H 1.48499 * 109.46974 * 240.00179 * 13 11 9 17 17 C 1.50705 * 109.47510 * 65.41329 * 3 2 1 18 18 C 1.38243 * 119.97387 * 240.00242 * 17 3 2 19 19 C 1.38202 * 120.02545 * 179.97438 * 18 17 3 20 20 C 1.38465 * 119.97155 * 359.97438 * 19 18 17 21 21 F 1.35099 * 120.02401 * 179.97438 * 20 19 18 22 22 C 1.38457 * 119.94978 * 0.25854 * 20 19 18 23 23 C 1.38202 * 119.97360 * 359.46553 * 22 20 19 24 24 H 1.08999 * 109.47432 * 304.34491 * 1 2 3 25 25 H 1.09002 * 109.46342 * 64.34086 * 1 2 3 26 26 H 1.08995 * 109.46957 * 184.33456 * 1 2 3 27 27 H 1.08992 * 109.47353 * 239.99080 * 2 1 3 28 28 H 1.09004 * 109.46364 * 119.99629 * 2 1 3 29 29 H 1.08995 * 109.46966 * 294.81743 * 6 5 3 30 30 H 1.09001 * 109.46900 * 54.82200 * 6 5 3 31 31 H 1.08991 * 109.47732 * 300.00267 * 7 6 5 32 32 H 1.09001 * 109.46889 * 60.00597 * 7 6 5 33 33 H 1.09007 * 109.47118 * 300.00286 * 8 7 6 34 34 H 1.09001 * 109.46942 * 59.99927 * 8 7 6 35 35 H 0.97002 * 119.99540 * 180.02562 * 12 11 9 36 36 H 1.08000 * 119.98791 * 0.02562 * 18 17 3 37 37 H 1.07994 * 120.01294 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.01372 * 179.73882 * 22 20 19 39 39 H 1.07995 * 119.99040 * 180.29826 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5997 1.9835 -0.8376 5 16 3.8469 1.4450 -0.1614 6 6 4.1074 0.8125 -1.8415 7 6 5.5972 0.8741 -2.1843 8 6 5.8169 0.3412 -3.6016 9 6 7.2843 0.4013 -3.9391 10 1 7.9898 0.7812 -3.2149 11 6 7.7263 -0.0287 -5.1723 12 7 6.8671 -0.4908 -6.0542 13 14 9.5454 0.0452 -5.5903 14 1 10.2963 0.6015 -4.4362 15 1 10.0403 -1.3224 -5.8907 16 1 9.7457 0.9158 -6.7765 17 6 1.6502 2.1132 1.2920 18 6 0.8489 3.2395 1.2711 19 6 0.4903 3.8551 2.4553 20 6 0.9335 3.3431 3.6630 21 9 0.5841 3.9444 4.8212 22 6 1.7400 2.2178 3.6824 23 6 2.0926 1.6005 2.4973 24 1 -0.3634 0.5798 0.8485 25 1 -0.3632 0.4450 -0.9264 26 1 -0.3633 -1.0247 0.0777 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.7639 -0.2204 -1.8981 30 1 3.5460 1.4215 -2.5501 31 1 5.9407 1.9069 -2.1276 32 1 6.1585 0.2651 -1.4757 33 1 5.4733 -0.6917 -3.6587 34 1 5.2555 0.9505 -4.3099 35 1 7.1781 -0.7937 -6.9217 36 1 0.5022 3.6379 0.3290 37 1 -0.1361 4.7347 2.4387 38 1 2.0898 1.8200 4.6236 39 1 2.7177 0.7200 2.5124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161835887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:12 Heat of formation + Delta-G solvation = -56.490859 kcal Electronic energy + Delta-G solvation = -18715.747566 eV Core-core repulsion = 15662.630544 eV Total energy + Delta-G solvation = -3053.117022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.11283 -39.59574 -35.32873 -34.47021 -32.05044 -31.41310 -30.63399 -27.59475 -26.71460 -23.52653 -23.46511 -22.63244 -20.89643 -20.22404 -17.93284 -16.74641 -16.66364 -16.12146 -15.82083 -15.55376 -14.80145 -14.68108 -14.62010 -14.35744 -13.91963 -13.71377 -13.55474 -12.95431 -12.70185 -12.45098 -12.26725 -12.12745 -11.78967 -11.57083 -11.44088 -11.17817 -10.98569 -10.88332 -10.82889 -10.50184 -9.81428 -9.76482 -9.37840 -9.30736 -9.12391 -8.70719 -8.38903 -7.48488 -6.03771 -4.06150 0.76311 0.98484 1.91889 2.80543 3.29764 3.37324 3.38697 3.42126 4.01185 4.31415 4.43628 4.44046 4.63047 4.70122 4.92041 5.02309 5.11004 5.17370 5.32354 5.34990 5.46084 5.56376 5.60873 5.65035 5.70634 5.83302 5.85986 5.91780 5.98216 6.04690 6.14540 6.27449 6.53209 6.62069 6.69647 6.99778 7.61456 7.73269 7.95342 8.37286 9.00603 9.58297 11.07613 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033095 B = 0.002798 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.855843 B =10003.691127 C =10470.988393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.019 4.019 4 H 0.093 0.907 5 S -0.266 6.266 6 C -0.074 4.074 7 C -0.095 4.095 8 C 0.028 3.972 9 C -0.520 4.520 10 H 0.057 0.943 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.065 4.065 18 C -0.079 4.079 19 C -0.153 4.153 20 C 0.094 3.906 21 F -0.142 7.142 22 C -0.151 4.151 23 C -0.072 4.072 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.260 0.740 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 4.589 16.784 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.147 4.147 4 H 0.112 0.888 5 S -0.033 6.033 6 C -0.222 4.222 7 C -0.134 4.134 8 C -0.011 4.011 9 C -0.558 4.558 10 H 0.075 0.925 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.066 4.066 18 C -0.098 4.098 19 C -0.172 4.172 20 C 0.074 3.926 21 F -0.121 7.121 22 C -0.170 4.170 23 C -0.091 4.091 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.042 4.864 17.383 23.496 hybrid contribution 0.017 -0.212 -1.079 1.099 sum -15.025 4.652 16.304 22.654 Atomic orbital electron populations 1.21816 0.95237 1.01917 1.01943 1.21891 0.96196 0.93872 1.03557 1.22113 0.95746 0.99160 0.97658 0.88831 1.87025 1.05222 1.87161 1.23915 1.23671 1.03599 1.02731 0.92221 1.21467 0.89521 1.01630 1.00759 1.19104 0.96969 0.96226 0.88841 1.21260 0.92918 1.41942 0.99692 0.92497 1.25025 0.97761 0.95261 0.96415 1.69974 1.33894 1.43000 1.06674 0.86521 0.85339 0.77694 0.78390 1.19660 1.20974 1.20983 1.19351 0.97801 0.95828 0.93631 1.20902 0.96757 0.94265 0.97908 1.21090 1.03061 1.01895 0.91120 1.17744 0.99215 0.94077 0.81557 1.91493 1.90574 1.82770 1.47272 1.21133 0.99991 0.96001 0.99902 1.20945 0.97831 0.99692 0.90666 0.92499 0.92664 0.92383 0.90955 0.90659 0.90448 0.90597 0.92376 0.92443 0.96447 0.96457 0.93016 0.84919 0.84700 0.84654 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.80 37.16 0.36 -0.91 16 2 C -0.12 -1.17 5.27 -26.73 -0.14 -1.31 16 3 C -0.02 -0.21 2.46 -27.88 -0.07 -0.28 16 4 H 0.09 1.00 7.87 -51.92 -0.41 0.59 16 5 S -0.27 -3.90 20.75 -107.50 -2.23 -6.13 16 6 C -0.07 -1.24 5.60 37.16 0.21 -1.03 16 7 C -0.09 -1.94 5.16 -26.73 -0.14 -2.08 16 8 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 9 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 10 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 13 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 C -0.06 -0.67 3.71 -104.61 -0.39 -1.06 16 18 C -0.08 -0.73 9.67 -39.59 -0.38 -1.11 16 19 C -0.15 -1.40 10.03 -39.51 -0.40 -1.79 16 20 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 21 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 22 C -0.15 -1.46 10.03 -39.51 -0.40 -1.85 16 23 C -0.07 -0.73 8.71 -39.59 -0.34 -1.07 16 24 H 0.06 0.48 7.26 -51.93 -0.38 0.10 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.79 6.98 -51.93 -0.36 0.43 16 28 H 0.07 0.74 7.21 -51.93 -0.37 0.37 16 29 H 0.08 1.24 7.31 -51.93 -0.38 0.86 16 30 H 0.08 1.23 8.14 -51.92 -0.42 0.80 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.13 1.00 7.94 -52.49 -0.42 0.59 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.14 1.33 7.54 -52.49 -0.40 0.93 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -29.83 340.73 -9.92 -39.76 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.06 Total: -3.14 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -2.52 Total: -24.73 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -2.23 Total: -6.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.83 -9.92 -39.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161835887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.732 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds