Wall clock time and date at job start Tue Mar 31 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47134 * 2 1 4 4 H 1.09007 * 109.47268 * 54.89690 * 3 2 1 5 5 S 1.81405 * 109.47211 * 174.89342 * 3 2 1 6 6 C 1.81395 * 103.00150 * 292.01205 * 5 3 2 7 7 C 1.53000 * 109.47449 * 176.78852 * 6 5 3 8 8 C 1.52998 * 109.47590 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47183 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99927 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99887 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99682 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99925 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47059 * 60.00330 * 13 11 9 15 15 H 1.48503 * 109.47171 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47209 * 300.00368 * 13 11 9 17 17 C 1.50700 * 109.47323 * 294.89478 * 3 2 1 18 18 C 1.38243 * 119.97111 * 119.99987 * 17 3 2 19 19 C 1.38203 * 120.02101 * 180.02562 * 18 17 3 20 20 C 1.38458 * 119.97843 * 0.22741 * 19 18 17 21 21 F 1.35093 * 120.02736 * 179.72672 * 20 19 18 22 22 C 1.38463 * 119.94255 * 359.49818 * 20 19 18 23 23 C 1.38200 * 119.97702 * 0.52479 * 22 20 19 24 24 H 1.08998 * 109.47469 * 185.95523 * 1 2 3 25 25 H 1.08999 * 109.47684 * 305.95934 * 1 2 3 26 26 H 1.09002 * 109.47223 * 65.95748 * 1 2 3 27 27 H 1.09000 * 109.47386 * 239.99590 * 2 1 3 28 28 H 1.09002 * 109.46736 * 119.99899 * 2 1 3 29 29 H 1.09005 * 109.47348 * 296.79190 * 6 5 3 30 30 H 1.09005 * 109.47360 * 56.79182 * 6 5 3 31 31 H 1.09005 * 109.47122 * 300.00477 * 7 6 5 32 32 H 1.09005 * 109.46570 * 59.99847 * 7 6 5 33 33 H 1.08997 * 109.46983 * 300.00396 * 8 7 6 34 34 H 1.09000 * 109.46588 * 60.00132 * 8 7 6 35 35 H 0.97000 * 119.99615 * 180.02562 * 12 11 9 36 36 H 1.08001 * 119.99241 * 0.02562 * 18 17 3 37 37 H 1.08006 * 120.01062 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.01303 * 180.25032 * 22 20 19 39 39 H 1.07995 * 119.98598 * 179.74673 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6039 1.9820 0.8408 5 16 3.8476 1.4447 0.1522 6 6 4.1159 0.8317 1.8382 7 6 5.6175 0.6978 2.0994 8 6 5.8439 0.1813 3.5216 9 6 7.3229 0.0501 3.7789 10 1 8.0307 0.3095 3.0055 11 6 7.7726 -0.4002 5.0021 12 7 6.9106 -0.7156 5.9440 13 14 9.6059 -0.5636 5.3208 14 1 10.2553 0.7628 5.1660 15 1 9.8256 -1.0648 6.7014 16 1 10.1941 -1.5193 4.3483 17 6 1.6435 2.1154 -1.2888 18 6 0.8423 3.2417 -1.2617 19 6 0.4777 3.8594 -2.4431 20 6 0.9113 3.3472 -3.6541 21 9 0.5509 3.9470 -4.8097 22 6 1.7184 2.2224 -3.6795 23 6 2.0814 1.6061 -2.4970 24 1 -0.3634 -1.0221 0.1066 25 1 -0.3634 0.6034 0.8318 26 1 -0.3634 0.4187 -0.9385 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.6839 1.5325 2.5528 30 1 3.6393 -0.1422 1.9510 31 1 6.0495 -0.0030 1.3848 32 1 6.0941 1.6716 1.9866 33 1 5.4120 0.8824 4.2358 34 1 5.3672 -0.7924 3.6347 35 1 7.2270 -1.0321 6.8047 36 1 0.5011 3.6390 -0.3172 37 1 -0.1486 4.7391 -2.4218 38 1 2.0606 1.8242 -4.6234 39 1 2.7075 0.7264 -2.5169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161836044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:14 Heat of formation + Delta-G solvation = -56.333282 kcal Electronic energy + Delta-G solvation = -18718.505994 eV Core-core repulsion = 15665.395805 eV Total energy + Delta-G solvation = -3053.110189 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.11360 -39.59019 -35.32893 -34.46844 -32.04967 -31.41193 -30.63695 -27.59222 -26.70907 -23.52089 -23.46205 -22.63338 -20.90645 -20.21629 -17.93140 -16.75016 -16.65983 -16.11543 -15.82059 -15.55792 -14.79917 -14.68286 -14.61789 -14.36193 -13.91551 -13.71155 -13.55013 -12.92976 -12.69435 -12.45880 -12.27598 -12.14329 -11.76859 -11.57233 -11.44201 -11.17859 -10.97246 -10.86277 -10.83206 -10.53860 -9.80533 -9.76276 -9.37707 -9.30598 -9.14761 -8.70441 -8.38068 -7.48463 -6.03332 -4.05897 0.76473 0.98598 1.91908 2.80655 3.32555 3.36604 3.38955 3.39664 4.01251 4.31457 4.43443 4.44149 4.63094 4.69862 4.92140 5.02440 5.11018 5.17686 5.32557 5.35174 5.45609 5.57071 5.60838 5.65130 5.71064 5.83777 5.86121 5.92130 5.98211 6.04726 6.15248 6.27560 6.53238 6.62186 6.69655 6.99785 7.61192 7.73486 7.95500 8.37416 9.00360 9.58362 11.07997 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.002790 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.637250 B =10033.093256 C =10472.394280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.018 4.018 4 H 0.093 0.907 5 S -0.266 6.266 6 C -0.075 4.075 7 C -0.095 4.095 8 C 0.028 3.972 9 C -0.521 4.521 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.064 4.064 18 C -0.079 4.079 19 C -0.153 4.153 20 C 0.094 3.906 21 F -0.142 7.142 22 C -0.151 4.151 23 C -0.072 4.072 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.261 0.739 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.953 5.335 -16.373 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.147 4.147 4 H 0.112 0.888 5 S -0.033 6.033 6 C -0.223 4.223 7 C -0.134 4.134 8 C -0.011 4.011 9 C -0.560 4.560 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.066 4.066 18 C -0.098 4.098 19 C -0.172 4.172 20 C 0.074 3.926 21 F -0.121 7.121 22 C -0.170 4.170 23 C -0.091 4.091 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.175 5.605 -16.967 23.443 hybrid contribution 0.041 -0.300 1.015 1.059 sum -15.134 5.305 -15.952 22.620 Atomic orbital electron populations 1.21803 0.95225 1.01878 1.01903 1.21888 0.96176 0.93868 1.03594 1.22115 0.95726 0.99138 0.97692 0.88844 1.87023 1.05144 1.87713 1.23458 1.23679 1.03589 1.02774 0.92227 1.21467 0.89318 1.01433 1.01150 1.19090 0.96905 0.96213 0.88849 1.21186 0.92063 1.44063 0.98681 0.92602 1.25019 0.97803 0.95388 0.96193 1.69951 1.33874 1.44953 1.04770 0.86631 0.85478 0.78536 0.77224 1.20179 1.21267 1.20181 1.19351 0.97780 0.95825 0.93631 1.20896 0.96755 0.94244 0.97932 1.21088 1.03085 1.01885 0.91108 1.17741 0.99159 0.94096 0.81607 1.91491 1.90282 1.82837 1.47501 1.21136 0.99950 0.96014 0.99926 1.20944 0.97830 0.99704 0.90670 0.92374 0.92666 0.92593 0.90616 0.90949 0.90579 0.90450 0.92372 0.92453 0.96468 0.96457 0.92896 0.84939 0.84710 0.84655 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.63 37.16 0.36 -0.92 16 2 C -0.12 -1.18 5.27 -26.74 -0.14 -1.32 16 3 C -0.02 -0.21 2.46 -27.89 -0.07 -0.27 16 4 H 0.09 1.00 7.87 -51.92 -0.41 0.59 16 5 S -0.27 -3.90 20.74 -107.50 -2.23 -6.13 16 6 C -0.07 -1.24 5.74 37.16 0.21 -1.03 16 7 C -0.09 -1.94 5.16 -26.73 -0.14 -2.08 16 8 C 0.03 0.72 4.97 -27.89 -0.14 0.58 16 9 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 13 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.06 -0.67 3.87 -104.62 -0.41 -1.07 16 18 C -0.08 -0.73 9.67 -39.59 -0.38 -1.11 16 19 C -0.15 -1.39 10.03 -39.51 -0.40 -1.79 16 20 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 21 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 22 C -0.15 -1.46 10.03 -39.51 -0.40 -1.86 16 23 C -0.07 -0.73 8.71 -39.59 -0.35 -1.08 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.47 7.58 -51.93 -0.39 0.08 16 27 H 0.08 0.76 7.22 -51.93 -0.37 0.38 16 28 H 0.07 0.80 6.84 -51.93 -0.36 0.44 16 29 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 30 H 0.08 1.24 7.02 -51.92 -0.36 0.87 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.13 1.00 7.94 -52.49 -0.42 0.58 16 37 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.14 1.34 7.55 -52.49 -0.40 0.94 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -29.79 340.76 -9.94 -39.72 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.06 Total: -3.06 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -2.54 Total: -24.77 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -2.23 Total: -6.13 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.79 -9.94 -39.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161836044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.612 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds