Wall clock time and date at job start Tue Mar 31 2020 05:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29025 * 124.91776 * 2 1 4 4 C 1.31784 * 117.12354 * 179.97438 * 3 2 1 5 5 C 1.50709 * 122.74608 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47122 * 90.02217 * 5 4 3 7 7 O 1.21274 * 120.00115 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99735 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00065 * 359.97438 * 8 6 5 10 10 C 1.46506 * 120.00000 * 180.02562 * 8 6 5 11 11 H 1.08998 * 109.46566 * 359.97438 * 10 8 6 12 12 C 1.52997 * 109.47289 * 119.99453 * 10 8 6 13 13 C 1.50697 * 109.47015 * 239.99910 * 10 8 6 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 8 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46954 * 59.99790 * 17 15 13 19 19 H 1.48496 * 109.46873 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47158 * 300.00368 * 17 15 13 21 21 C 1.33631 * 114.50133 * 0.22776 * 4 3 2 22 22 C 1.50704 * 126.03687 * 179.77300 * 21 4 3 23 23 S 1.70979 * 124.91784 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46766 * 90.00640 * 1 2 3 25 25 H 1.09001 * 109.46934 * 210.00190 * 1 2 3 26 26 H 1.08997 * 109.47224 * 330.00879 * 1 2 3 27 27 H 1.09002 * 109.46957 * 330.02282 * 5 4 3 28 28 H 1.09000 * 109.46736 * 210.02239 * 5 4 3 29 29 H 1.09000 * 109.46842 * 270.00180 * 9 8 6 30 30 H 1.08994 * 109.47173 * 30.00714 * 9 8 6 31 31 H 1.08998 * 109.46730 * 150.00747 * 9 8 6 32 32 H 1.09002 * 109.47153 * 179.97438 * 12 10 8 33 33 H 1.09001 * 109.46832 * 60.00146 * 12 10 8 34 34 H 1.09004 * 109.47261 * 300.00128 * 12 10 8 35 35 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47345 * 89.99659 * 22 21 4 37 37 H 1.08998 * 109.47105 * 210.00061 * 22 21 4 38 38 H 1.09003 * 109.47073 * 329.99996 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0246 0.0000 6 6 4.8573 2.4069 1.4206 7 8 4.3447 1.8088 2.3427 8 7 5.7181 3.4144 1.6664 9 6 6.3369 4.1373 0.5526 10 6 6.0360 3.7858 3.0475 11 1 5.4852 3.1416 3.7328 12 6 7.5380 3.6204 3.2873 13 6 5.6445 5.2216 3.2843 14 1 5.2035 5.7998 2.4858 15 6 5.8494 5.7972 4.5204 16 7 6.3860 5.0929 5.4928 17 14 5.3648 7.5772 4.8137 18 1 3.9071 7.7383 4.5800 19 1 5.6857 7.9533 6.2139 20 1 6.1156 8.4550 3.8803 21 6 3.9354 -0.4006 -0.0038 22 6 5.3574 -0.8995 -0.0092 23 16 2.4857 -1.4020 0.0006 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 4.0906 2.8789 -0.5142 28 1 5.4432 1.7219 -0.5137 29 1 7.2715 3.6489 0.2769 30 1 5.6604 4.1360 -0.3020 31 1 6.5393 5.1650 0.8542 32 1 7.7746 3.8972 4.3147 33 1 8.0885 4.2649 2.6019 34 1 7.8212 2.5818 3.1160 35 1 6.5298 5.4977 6.3625 36 1 5.7033 -1.0223 1.0171 37 1 5.4042 -1.8582 -0.5256 38 1 5.9934 -0.1786 -0.5231 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163144706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:40 Heat of formation + Delta-G solvation = 1.140984 kcal Electronic energy + Delta-G solvation = -20143.449160 eV Core-core repulsion = 17112.751203 eV Total energy + Delta-G solvation = -3030.697956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.11070 -38.60277 -35.27968 -33.74630 -32.82187 -30.51771 -30.10415 -28.55366 -26.03756 -25.21507 -25.01384 -22.98007 -21.10048 -18.88838 -18.32095 -17.63954 -16.63616 -16.16640 -15.40567 -15.00379 -14.73492 -14.45321 -14.10919 -13.44382 -13.37289 -13.31392 -12.79129 -12.73895 -12.55193 -12.40942 -12.11649 -12.11026 -11.65334 -11.51794 -11.45608 -11.01524 -11.00642 -10.81390 -10.64636 -10.23384 -10.13934 -9.48121 -9.19405 -9.10236 -8.93691 -8.42245 -8.35700 -7.54900 -6.04595 -4.12379 0.82915 1.42921 1.80560 2.89997 3.29775 3.34838 3.36400 3.44996 4.01727 4.23348 4.43304 4.91791 5.05118 5.10200 5.25259 5.28025 5.32975 5.37609 5.40138 5.52938 5.67133 5.76332 5.84548 5.92132 6.01057 6.07411 6.32685 6.39590 6.77395 6.85327 7.09009 7.46018 7.56872 7.74515 7.92650 8.04861 8.23223 8.56646 8.86555 9.10987 9.53960 11.00728 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.004316 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.669638 B = 6485.414870 C = 6965.039027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.044 3.956 3 N -0.457 5.457 4 C 0.093 3.907 5 C -0.069 4.069 6 C 0.510 3.490 7 O -0.544 6.544 8 N -0.594 5.594 9 C 0.082 3.918 10 C 0.259 3.741 11 H 0.062 0.938 12 C -0.145 4.145 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.210 4.210 22 C -0.074 4.074 23 S 0.097 5.903 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.010 0.990 35 H 0.263 0.737 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 -10.952 -14.332 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.234 4.234 3 N -0.171 5.171 4 C -0.038 4.038 5 C -0.112 4.112 6 C 0.296 3.704 7 O -0.423 6.423 8 N -0.326 5.326 9 C -0.062 4.062 10 C 0.159 3.841 11 H 0.080 0.920 12 C -0.203 4.203 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.331 4.331 22 C -0.133 4.133 23 S 0.352 5.648 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.048 0.952 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.839 -11.794 -13.620 18.655 hybrid contribution 0.378 1.833 0.210 1.883 sum -4.461 -9.961 -13.410 17.290 Atomic orbital electron populations 1.20400 0.85389 1.04185 1.03471 1.26779 1.01434 0.90671 1.04552 1.65994 1.04535 1.31584 1.14985 1.19407 0.89677 0.93011 1.01730 1.20297 0.97256 0.96192 0.97423 1.20073 0.79732 0.80771 0.89852 1.90657 1.52020 1.53547 1.46037 1.48212 1.43005 1.32029 1.09335 1.21621 0.96662 0.98876 0.89045 1.18913 0.92799 0.96010 0.76419 0.92021 1.22074 0.97895 0.96283 1.04091 1.21292 1.41354 0.96372 0.97408 0.92302 1.24889 0.94932 0.98149 0.95790 1.69870 1.43422 1.36432 1.02932 0.86557 0.79079 0.84556 0.77202 1.20254 1.21177 1.20214 1.25518 1.00055 0.95461 1.12056 1.20247 0.88709 1.01037 1.03322 1.83633 0.98052 1.13021 1.70142 0.89885 0.90319 0.89262 0.87751 0.88022 0.93867 0.92794 0.90036 0.88897 0.95169 0.97097 0.92667 0.90175 0.91334 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.46 36.01 0.38 -0.37 16 2 C 0.04 0.63 7.39 -13.46 -0.10 0.53 16 3 N -0.46 -8.01 10.53 -8.06 -0.08 -8.10 16 4 C 0.09 1.58 5.23 -84.22 -0.44 1.14 16 5 C -0.07 -1.12 4.44 -29.03 -0.13 -1.25 16 6 C 0.51 10.98 7.67 -10.99 -0.08 10.90 16 7 O -0.54 -14.16 15.36 5.56 0.09 -14.08 16 8 N -0.59 -12.91 2.75 -175.27 -0.48 -13.40 16 9 C 0.08 1.37 9.24 59.85 0.55 1.92 16 10 C 0.26 6.74 2.63 -69.08 -0.18 6.56 16 11 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 12 C -0.14 -3.50 8.97 37.16 0.33 -3.17 16 13 C -0.53 -14.46 7.99 -34.44 -0.28 -14.73 16 14 H 0.06 1.59 7.33 -52.49 -0.38 1.21 16 15 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 17 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.21 -3.11 6.59 -35.92 -0.24 -3.35 16 22 C -0.07 -0.87 10.10 36.01 0.36 -0.51 16 23 S 0.10 1.23 23.18 -107.50 -2.49 -1.26 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.10 1.58 7.40 -51.93 -0.38 1.19 16 28 H 0.10 1.30 6.67 -51.93 -0.35 0.96 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.73 6.44 -51.93 -0.33 0.40 16 31 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 32 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 33 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.82 6.76 -51.93 -0.35 0.47 16 LS Contribution 327.58 15.07 4.94 4.94 Total: -1.00 -34.02 327.58 -7.68 -41.70 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.33 Total: -0.64 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 0.08 Total: -0.62 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.06 Total: -46.37 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.09 Total: -14.08 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.49 Total: -1.26 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.02 -7.68 -41.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163144706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.841 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds