Wall clock time and date at job start Tue Mar 31 2020 05:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29025 * 124.91776 * 2 1 4 4 C 1.31784 * 117.12354 * 179.97438 * 3 2 1 5 5 C 1.50709 * 122.74608 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47122 * 90.02217 * 5 4 3 7 7 O 1.21274 * 120.00115 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99735 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00065 * 359.97438 * 8 6 5 10 10 C 1.46506 * 120.00000 * 180.02562 * 8 6 5 11 11 H 1.08998 * 109.46566 * 359.97438 * 10 8 6 12 12 C 1.52997 * 109.47289 * 119.99453 * 10 8 6 13 13 C 1.50697 * 109.47015 * 239.99910 * 10 8 6 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 8 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46954 * 59.99790 * 17 15 13 19 19 H 1.48496 * 109.46873 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47158 * 300.00368 * 17 15 13 21 21 C 1.33631 * 114.50133 * 0.22776 * 4 3 2 22 22 C 1.50704 * 126.03687 * 179.77300 * 21 4 3 23 23 S 1.70979 * 124.91784 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46766 * 90.00640 * 1 2 3 25 25 H 1.09001 * 109.46934 * 210.00190 * 1 2 3 26 26 H 1.08997 * 109.47224 * 330.00879 * 1 2 3 27 27 H 1.09002 * 109.46957 * 330.02282 * 5 4 3 28 28 H 1.09000 * 109.46736 * 210.02239 * 5 4 3 29 29 H 1.09000 * 109.46842 * 270.00180 * 9 8 6 30 30 H 1.08994 * 109.47173 * 30.00714 * 9 8 6 31 31 H 1.08998 * 109.46730 * 150.00747 * 9 8 6 32 32 H 1.09002 * 109.47153 * 179.97438 * 12 10 8 33 33 H 1.09001 * 109.46832 * 60.00146 * 12 10 8 34 34 H 1.09004 * 109.47261 * 300.00128 * 12 10 8 35 35 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47345 * 89.99659 * 22 21 4 37 37 H 1.08998 * 109.47105 * 210.00061 * 22 21 4 38 38 H 1.09003 * 109.47073 * 329.99996 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0246 0.0000 6 6 4.8573 2.4069 1.4206 7 8 4.3447 1.8088 2.3427 8 7 5.7181 3.4144 1.6664 9 6 6.3369 4.1373 0.5526 10 6 6.0360 3.7858 3.0475 11 1 5.4852 3.1416 3.7328 12 6 7.5380 3.6204 3.2873 13 6 5.6445 5.2216 3.2843 14 1 5.2035 5.7998 2.4858 15 6 5.8494 5.7972 4.5204 16 7 6.3860 5.0929 5.4928 17 14 5.3648 7.5772 4.8137 18 1 3.9071 7.7383 4.5800 19 1 5.6857 7.9533 6.2139 20 1 6.1156 8.4550 3.8803 21 6 3.9354 -0.4006 -0.0038 22 6 5.3574 -0.8995 -0.0092 23 16 2.4857 -1.4020 0.0006 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 4.0906 2.8789 -0.5142 28 1 5.4432 1.7219 -0.5137 29 1 7.2715 3.6489 0.2769 30 1 5.6604 4.1360 -0.3020 31 1 6.5393 5.1650 0.8542 32 1 7.7746 3.8972 4.3147 33 1 8.0885 4.2649 2.6019 34 1 7.8212 2.5818 3.1160 35 1 6.5298 5.4977 6.3625 36 1 5.7033 -1.0223 1.0171 37 1 5.4042 -1.8582 -0.5256 38 1 5.9934 -0.1786 -0.5231 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163144706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:38 Heat of formation + Delta-G solvation = -21.406411 kcal Electronic energy + Delta-G solvation = -20144.426888 eV Core-core repulsion = 17112.751203 eV Total energy + Delta-G solvation = -3031.675685 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.38831 -40.14144 -37.11212 -34.98228 -34.63683 -32.02548 -31.21508 -30.03401 -27.52506 -27.30353 -26.11840 -24.18057 -22.79982 -20.31072 -19.62901 -18.84701 -18.51935 -17.90701 -17.12875 -16.45134 -16.18399 -15.81085 -15.58890 -14.74712 -14.50034 -14.29899 -14.27921 -14.11496 -13.91734 -13.68280 -13.48202 -13.15896 -13.06336 -13.03382 -12.88053 -12.77295 -12.66139 -12.61763 -12.19656 -12.12335 -12.02130 -11.20613 -10.72933 -10.57984 -10.49522 -10.12547 -9.49600 -9.31446 -8.15149 -6.31765 -0.24234 0.41440 0.73248 1.39972 1.42944 1.50078 1.70050 1.81755 2.36288 2.57568 3.12526 3.18182 3.76678 3.95794 4.05610 4.11177 4.31279 4.41722 4.50037 4.63669 4.66433 4.69032 4.76756 4.78537 4.90329 4.91842 4.97087 5.05707 5.08410 5.09701 5.28026 5.47806 5.61476 5.67147 6.05314 6.16728 6.76116 6.82624 6.85203 7.32085 7.49521 8.88976 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.004316 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.669638 B = 6485.414870 C = 6965.039027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.028 3.972 3 N -0.501 5.501 4 C 0.060 3.940 5 C -0.054 4.054 6 C 0.502 3.498 7 O -0.601 6.601 8 N -0.601 5.601 9 C 0.076 3.924 10 C 0.262 3.738 11 H 0.003 0.997 12 C -0.129 4.129 13 C -0.540 4.540 14 H 0.060 0.940 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.964 3.036 18 H -0.280 1.280 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.223 4.223 22 C -0.075 4.075 23 S 0.146 5.854 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.140 0.860 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 -11.052 -16.631 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.249 4.249 3 N -0.217 5.217 4 C -0.071 4.071 5 C -0.096 4.096 6 C 0.290 3.710 7 O -0.483 6.483 8 N -0.331 5.331 9 C -0.066 4.066 10 C 0.160 3.840 11 H 0.021 0.979 12 C -0.188 4.188 13 C -0.579 4.579 14 H 0.078 0.922 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.789 3.211 18 H -0.206 1.206 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.344 4.344 22 C -0.134 4.134 23 S 0.401 5.599 24 H 0.125 0.875 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.134 0.866 28 H 0.158 0.842 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.716 -11.887 -15.969 20.459 hybrid contribution 0.296 1.759 0.929 2.011 sum -4.421 -10.128 -15.040 18.663 Atomic orbital electron populations 1.20586 0.82930 1.04776 1.05197 1.27486 1.03169 0.90938 1.03345 1.66011 1.05247 1.33463 1.16945 1.19591 0.89904 0.93954 1.03683 1.20242 0.99038 0.96850 0.93485 1.21017 0.78475 0.79794 0.91692 1.90619 1.53933 1.55409 1.48359 1.48225 1.43396 1.32616 1.08898 1.21910 0.98611 0.97784 0.88256 1.18500 0.93005 0.94206 0.78261 0.97869 1.21840 0.96827 0.97254 1.02849 1.21565 1.41468 0.97073 0.97745 0.92208 1.25740 0.94820 1.02395 0.95523 1.70019 1.44209 1.38162 1.03267 0.85520 0.78455 0.79653 0.77447 1.20579 1.20793 1.18415 1.25990 1.02118 0.95573 1.10764 1.20360 0.87257 1.02870 1.02899 1.83362 0.96338 1.11283 1.68885 0.87486 0.88103 0.90241 0.86557 0.84228 0.90910 0.89258 0.91335 0.91583 0.93267 0.96015 0.92655 0.91716 0.88647 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.46 71.24 0.75 -0.65 16 2 C 0.03 0.79 7.39 88.52 0.65 1.44 16 3 N -0.50 -17.47 10.53 -179.40 -1.89 -19.35 16 4 C 0.06 1.98 5.23 41.52 0.22 2.20 16 5 C -0.05 -1.68 4.44 29.10 0.13 -1.55 16 6 C 0.50 21.76 7.67 87.66 0.67 22.43 16 7 O -0.60 -32.62 15.36 -3.01 -0.05 -32.66 16 8 N -0.60 -26.02 2.75 -826.82 -2.28 -28.29 16 9 C 0.08 2.38 9.24 127.77 1.18 3.56 16 10 C 0.26 14.07 2.63 44.24 0.12 14.18 16 11 H 0.00 0.22 6.90 -2.39 -0.02 0.20 16 12 C -0.13 -6.31 8.97 71.98 0.65 -5.66 16 13 C -0.54 -30.17 7.99 25.60 0.20 -29.97 16 14 H 0.06 3.24 7.33 -2.91 -0.02 3.22 16 15 C 0.01 0.83 5.30 84.66 0.45 1.27 16 16 N -0.92 -54.05 11.32 21.45 0.24 -53.80 16 17 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 C -0.22 -6.31 6.59 24.64 0.16 -6.15 16 22 C -0.07 -1.62 10.10 71.24 0.72 -0.90 16 23 S 0.15 3.47 23.18 -56.49 -1.31 2.16 16 24 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.12 3.29 7.40 -2.39 -0.02 3.27 16 28 H 0.14 3.14 6.67 -2.39 -0.02 3.12 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 2.14 6.44 -2.39 -0.02 2.12 16 31 H 0.07 2.33 7.02 -2.39 -0.02 2.31 16 32 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 33 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 34 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.70 6.76 -2.39 -0.02 1.68 16 Total: -1.00 -77.94 327.58 3.71 -74.24 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.06 Total: 11.52 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.90 Total: 0.21 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -3.92 Total: -101.45 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.05 Total: -32.66 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.31 Total: 2.16 kcal Total: -77.94 3.71 -74.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163144706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.832 kcal (2) G-P(sol) polarization free energy of solvation -77.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds