Wall clock time and date at job start Tue Mar 31 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47391 * 2 1 4 4 C 1.50699 * 109.47574 * 179.97438 * 3 2 1 5 5 N 1.29431 * 124.80054 * 90.02022 * 4 3 2 6 6 C 1.30944 * 117.36540 * 179.97438 * 5 4 3 7 7 C 1.35664 * 114.18872 * 359.97438 * 6 5 4 8 8 C 1.46684 * 126.12788 * 179.97438 * 7 6 5 9 9 O 1.21694 * 119.99829 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00162 * 0.02643 * 8 7 6 11 11 C 1.46502 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47072 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47397 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47477 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99883 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00218 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99839 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00149 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47185 * 60.00089 * 18 16 14 20 20 H 1.48499 * 109.47340 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47393 * 299.99685 * 18 16 14 22 22 S 1.70947 * 124.80886 * 270.00551 * 4 3 2 23 23 H 1.09001 * 109.47128 * 60.00085 * 1 2 3 24 24 H 1.09000 * 109.47563 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47262 * 300.00358 * 1 2 3 26 26 H 1.09002 * 109.47262 * 239.99642 * 2 1 3 27 27 H 1.09001 * 109.47128 * 119.99915 * 2 1 3 28 28 H 1.09009 * 109.47250 * 60.00310 * 3 2 1 29 29 H 1.09001 * 109.47618 * 299.99790 * 3 2 1 30 30 H 1.07999 * 122.90578 * 179.73662 * 6 5 4 31 31 H 0.96999 * 120.00308 * 0.02562 * 10 8 7 32 32 H 1.09001 * 109.47279 * 300.00223 * 11 10 8 33 33 H 1.08994 * 109.47391 * 60.00349 * 11 10 8 34 34 H 1.09001 * 109.46967 * 300.00067 * 12 11 10 35 35 H 1.09008 * 109.47248 * 59.99799 * 12 11 10 36 36 H 1.08999 * 109.46538 * 300.00022 * 13 12 11 37 37 H 1.08997 * 109.46812 * 59.99286 * 13 12 11 38 38 H 0.96997 * 119.99872 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2861 1.4427 -1.0619 6 6 5.5845 1.4432 -0.8919 7 6 5.9750 1.4440 0.4073 8 6 7.3586 1.4442 0.8945 9 8 7.5824 1.4444 2.0907 10 7 8.3819 1.4441 0.0175 11 6 9.7637 1.4448 0.5041 12 6 10.7239 1.4452 -0.6871 13 6 12.1671 1.4453 -0.1789 14 6 13.1128 1.4463 -1.3522 15 1 12.7235 1.4464 -2.3596 16 6 14.4750 1.4461 -1.1396 17 7 14.9491 1.4455 0.0871 18 14 15.6473 1.4466 -2.5939 19 1 15.4131 2.6595 -3.4181 20 1 17.0480 1.4468 -2.1007 21 1 15.4129 0.2345 -3.4191 22 16 4.5222 1.4426 1.4046 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.6768 1.9563 -0.8900 30 1 6.2839 1.4393 -1.7147 31 1 8.2035 1.4443 -0.9360 32 1 9.9354 2.3352 1.1090 33 1 9.9361 0.5553 1.1098 34 1 10.5523 0.5551 -1.2923 35 1 10.5514 2.3351 -1.2926 36 1 12.3389 2.3353 0.4265 37 1 12.3392 0.5553 0.4263 38 1 15.9075 1.4457 0.2367 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172978120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:46 Heat of formation + Delta-G solvation = -24.992066 kcal Electronic energy + Delta-G solvation = -18417.867750 eV Core-core repulsion = 15386.036580 eV Total energy + Delta-G solvation = -3031.831170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32727 -39.14468 -35.60599 -35.49355 -33.40243 -31.75633 -30.66964 -28.50585 -26.53798 -24.80868 -23.30127 -22.22988 -21.57694 -20.69547 -19.45295 -18.37286 -17.30018 -16.41694 -15.63009 -15.60682 -15.32907 -14.88180 -14.78439 -14.47457 -14.41003 -13.91459 -13.69206 -13.28492 -12.56973 -12.30852 -12.15069 -11.96270 -11.81939 -11.73599 -11.69096 -11.21685 -10.90368 -10.78885 -10.66568 -10.42422 -9.90652 -9.80151 -9.70332 -9.44946 -9.21722 -9.16216 -8.86849 -8.38705 -6.03392 -4.06753 0.00995 0.90032 1.42861 2.24121 3.14193 3.31212 3.31315 3.36129 3.38507 3.68568 4.41973 4.42947 4.51959 4.55555 4.72499 4.97226 5.01791 5.08153 5.22960 5.30848 5.32308 5.56043 5.62676 5.66441 5.71425 5.77254 5.81488 6.09864 6.34560 6.54177 6.74829 6.94839 7.32758 7.51943 7.60693 7.72862 7.94749 8.17619 8.35788 8.99529 9.57502 11.07799 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.045601 B = 0.002407 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.879678 B =11628.259180 C =12079.156477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.046 4.046 4 C 0.038 3.962 5 N -0.477 5.477 6 C 0.090 3.910 7 C -0.290 4.290 8 C 0.587 3.413 9 O -0.538 6.538 10 N -0.711 5.711 11 C 0.117 3.883 12 C -0.122 4.122 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 S 0.225 5.775 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.182 0.818 31 H 0.399 0.601 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.338 -0.876 -0.139 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.086 4.086 4 C -0.236 4.236 5 N -0.191 5.191 6 C -0.068 4.068 7 C -0.414 4.414 8 C 0.371 3.629 9 O -0.417 6.417 10 N -0.362 5.362 11 C -0.005 4.005 12 C -0.160 4.160 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 S 0.484 5.516 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.199 0.801 31 H 0.234 0.766 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -28.478 -0.866 1.437 28.527 hybrid contribution 1.438 0.020 -2.056 2.509 sum -27.040 -0.847 -0.618 27.060 Atomic orbital electron populations 1.21760 0.94783 1.02209 1.02136 1.21552 0.96407 0.94830 1.03107 1.20389 0.84543 0.99085 1.04624 1.27555 1.01994 1.01990 0.92065 1.66118 1.04678 1.16572 1.31695 1.22200 0.91416 0.98031 0.95178 1.25896 0.99502 1.18363 0.97666 1.16744 0.82735 0.77219 0.86201 1.90852 1.85186 1.50528 1.15103 1.45989 1.06744 1.73903 1.09521 1.21747 0.77806 1.02387 0.98555 1.21914 0.97416 1.01044 0.95586 1.19027 0.87854 0.97726 0.96742 1.21154 0.91074 1.51169 0.92803 0.92668 1.25031 0.98494 0.95244 0.95707 1.69953 1.13308 1.50382 1.19583 0.86630 0.79917 0.78595 0.82677 1.20241 1.21265 1.20236 1.84064 0.94415 1.63752 1.09420 0.92347 0.92234 0.92438 0.91070 0.91537 0.89375 0.88460 0.80103 0.76649 0.91360 0.91353 0.92580 0.92572 0.96213 0.96211 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.15 0.37 -0.28 16 2 C -0.12 -0.69 5.92 -26.74 -0.16 -0.84 16 3 C -0.05 -0.28 5.79 -27.89 -0.16 -0.45 16 4 C 0.04 0.36 6.64 -13.29 -0.09 0.28 16 5 N -0.48 -5.32 10.51 -11.50 -0.12 -5.44 16 6 C 0.09 0.99 10.93 -18.85 -0.21 0.79 16 7 C -0.29 -3.66 6.48 -37.09 -0.24 -3.90 16 8 C 0.59 9.10 7.79 -12.85 -0.10 9.00 16 9 O -0.54 -10.29 16.97 5.19 0.09 -10.20 16 10 N -0.71 -10.23 5.54 -61.62 -0.34 -10.57 16 11 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 12 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 18 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 S 0.23 2.36 23.01 -107.50 -2.47 -0.11 16 23 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.18 1.54 7.15 -52.49 -0.38 1.16 16 31 H 0.40 4.55 7.18 -40.82 -0.29 4.25 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -32.93 340.34 -9.01 -41.94 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.71 Total: -2.47 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.30 Total: -8.72 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.27 Total: -41.97 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.47 Total: -0.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.93 -9.01 -41.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172978120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.945 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds