Wall clock time and date at job start Tue Mar 31 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47156 * 2 1 4 4 C 1.50695 * 109.46983 * 180.02562 * 3 2 1 5 5 N 1.29435 * 124.80643 * 90.02049 * 4 3 2 6 6 C 1.30941 * 117.36260 * 180.02562 * 5 4 3 7 7 C 1.35659 * 114.19471 * 0.02562 * 6 5 4 8 8 C 1.46680 * 126.13423 * 179.97438 * 7 6 5 9 9 O 1.21687 * 120.00164 * 171.50346 * 8 7 6 10 10 N 1.34779 * 119.99659 * 351.50151 * 8 7 6 11 11 C 1.46493 * 120.00186 * 4.02377 * 10 8 7 12 12 C 1.46500 * 119.99864 * 184.01897 * 10 8 7 13 13 H 1.09006 * 109.47455 * 0.02562 * 12 10 8 14 14 C 1.53000 * 109.47025 * 120.00163 * 12 10 8 15 15 C 1.50696 * 109.47265 * 240.00128 * 12 10 8 16 16 H 1.08002 * 120.00278 * 0.02562 * 15 12 10 17 17 C 1.37884 * 120.00310 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99546 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00290 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46891 * 60.00018 * 19 17 15 21 21 H 1.48497 * 109.46975 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47025 * 300.00149 * 19 17 15 23 23 S 1.70963 * 124.80439 * 270.34160 * 4 3 2 24 24 H 1.09003 * 109.47530 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47026 * 300.00009 * 1 2 3 26 26 H 1.08996 * 109.47191 * 60.00141 * 1 2 3 27 27 H 1.08997 * 109.46480 * 239.99803 * 2 1 3 28 28 H 1.09002 * 109.47133 * 120.00289 * 2 1 3 29 29 H 1.08993 * 109.46910 * 60.00240 * 3 2 1 30 30 H 1.08996 * 109.46956 * 300.00003 * 3 2 1 31 31 H 1.08003 * 122.90342 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47567 * 66.53309 * 11 10 8 33 33 H 1.09005 * 109.47093 * 306.53432 * 11 10 8 34 34 H 1.09001 * 109.47619 * 186.53121 * 11 10 8 35 35 H 1.09002 * 109.47389 * 60.00206 * 14 12 10 36 36 H 1.09002 * 109.47623 * 180.02562 * 14 12 10 37 37 H 1.09001 * 109.47454 * 300.00110 * 14 12 10 38 38 H 0.96996 * 120.00024 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4424 -0.0006 5 7 4.2853 1.4430 -1.0637 6 6 5.5838 1.4423 -0.8946 7 6 5.9753 1.4406 0.4042 8 6 7.3592 1.4390 0.8905 9 8 7.5878 1.5933 2.0757 10 7 8.3774 1.2667 0.0245 11 6 8.1086 1.1692 -1.4123 12 6 9.7532 1.1769 0.5200 13 1 9.7550 1.2696 1.6061 14 6 10.3511 -0.1743 0.1230 15 6 10.5769 2.2867 -0.0806 16 1 10.1212 2.9890 -0.7629 17 6 11.9125 2.4056 0.2408 18 7 12.4675 1.5501 1.0713 19 14 12.9337 3.7808 -0.5043 20 1 12.3538 5.0925 -0.1190 21 1 14.3281 3.6898 -0.0019 22 1 12.9307 3.6537 -1.9838 23 16 4.5233 1.4338 1.4027 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.2826 1.4423 -1.7181 32 1 7.7315 2.1247 -1.7771 33 1 7.3645 0.3929 -1.5909 34 1 9.0297 0.9176 -1.9381 35 1 10.3493 -0.2674 -0.9631 36 1 11.3745 -0.2414 0.4920 37 1 9.7553 -0.9771 0.5574 38 1 13.4071 1.6335 1.2972 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173527719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:36 Heat of formation + Delta-G solvation = 15.988007 kcal Electronic energy + Delta-G solvation = -19725.186029 eV Core-core repulsion = 16695.131888 eV Total energy + Delta-G solvation = -3030.054141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09971 -38.67066 -35.48683 -35.36424 -33.07880 -31.05195 -29.29057 -27.74303 -26.77174 -25.25374 -24.22197 -22.15364 -21.83855 -20.15854 -18.93458 -17.69450 -16.61566 -16.09112 -15.43691 -15.27248 -15.07883 -14.59278 -14.30033 -14.21731 -14.04038 -13.20329 -13.00392 -12.66496 -12.53641 -12.37208 -11.96139 -11.77331 -11.59724 -11.52748 -11.12996 -11.03055 -10.92805 -10.84894 -10.65734 -10.32795 -10.22236 -9.79954 -9.31605 -9.27006 -9.12158 -8.77839 -8.47108 -7.73224 -6.11250 -4.19724 0.43013 1.28748 1.80811 2.66811 3.26437 3.31662 3.33509 3.68528 3.87329 4.06128 4.37295 4.66020 4.71890 4.83038 5.02938 5.20290 5.23454 5.28137 5.39993 5.43086 5.48270 5.57874 5.74534 5.80734 5.84783 5.97638 6.12125 6.20478 6.69689 6.76068 6.97752 7.31588 7.42330 7.65435 7.70480 7.94575 8.12143 8.37902 8.74140 8.90708 9.46708 10.94167 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.039435 B = 0.003649 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.863078 B = 7670.563518 C = 7785.814133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.042 4.042 4 C 0.028 3.972 5 N -0.476 5.476 6 C 0.049 3.951 7 C -0.270 4.270 8 C 0.576 3.424 9 O -0.546 6.546 10 N -0.574 5.574 11 C 0.070 3.930 12 C 0.259 3.741 13 H 0.066 0.934 14 C -0.148 4.148 15 C -0.529 4.529 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 S 0.206 5.794 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.208 0.792 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.096 0.904 37 H 0.012 0.988 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.282 -2.867 -4.097 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.083 4.083 4 C -0.247 4.247 5 N -0.191 5.191 6 C -0.107 4.107 7 C -0.394 4.394 8 C 0.362 3.638 9 O -0.426 6.426 10 N -0.304 5.304 11 C -0.074 4.074 12 C 0.159 3.841 13 H 0.084 0.916 14 C -0.206 4.206 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.202 1.202 23 S 0.463 5.537 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.224 0.776 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.031 0.969 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.421 -2.837 -2.791 19.825 hybrid contribution 1.321 0.792 -1.272 1.998 sum -18.100 -2.045 -4.063 18.663 Atomic orbital electron populations 1.21760 0.94994 1.02032 1.02040 1.21547 0.96167 0.95118 1.03039 1.20314 0.84944 0.98778 1.04287 1.27460 1.01689 1.03249 0.92306 1.66221 1.04987 1.16275 1.31606 1.23668 0.91448 0.98772 0.96806 1.26093 0.99766 1.16215 0.97340 1.16768 0.82467 0.78413 0.86189 1.90796 1.84623 1.51275 1.15884 1.48075 1.08455 1.68217 1.05700 1.22128 1.02590 0.99659 0.83011 1.19062 0.73793 0.93928 0.97281 0.91633 1.22129 1.03638 0.95888 0.98967 1.21272 0.94414 1.12657 1.28389 0.92186 1.24891 0.97612 0.96268 0.94914 1.69862 1.12887 1.35870 1.33897 0.86521 0.79058 0.82284 0.79340 1.20207 1.21125 1.20165 1.83942 0.95098 1.64725 1.09950 0.92369 0.92508 0.92432 0.91154 0.91589 0.89643 0.88759 0.77623 0.92520 0.92339 0.89166 0.94942 0.88542 0.96861 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 3 C -0.04 -0.37 5.79 -27.89 -0.16 -0.54 16 4 C 0.03 0.36 6.64 -13.29 -0.09 0.27 16 5 N -0.48 -6.95 10.51 -11.50 -0.12 -7.07 16 6 C 0.05 0.75 9.51 -18.85 -0.18 0.57 16 7 C -0.27 -4.77 6.41 -37.10 -0.24 -5.00 16 8 C 0.58 12.64 7.64 -12.85 -0.10 12.54 16 9 O -0.55 -13.96 16.31 5.20 0.08 -13.87 16 10 N -0.57 -12.44 2.75 -176.81 -0.49 -12.93 16 11 C 0.07 1.16 7.66 59.84 0.46 1.62 16 12 C 0.26 6.60 2.58 -69.08 -0.18 6.42 16 13 H 0.07 1.94 6.90 -51.93 -0.36 1.58 16 14 C -0.15 -3.48 8.96 37.16 0.33 -3.15 16 15 C -0.53 -14.20 8.24 -34.44 -0.28 -14.48 16 16 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 18 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 19 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 S 0.21 2.97 23.02 -107.50 -2.48 0.49 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.21 2.82 3.66 -52.48 -0.19 2.63 16 32 H 0.06 0.85 6.90 -51.93 -0.36 0.50 16 33 H 0.06 0.82 6.03 -51.93 -0.31 0.51 16 34 H 0.09 1.52 6.61 -51.93 -0.34 1.18 16 35 H 0.03 0.69 6.91 -51.93 -0.36 0.34 16 36 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -31.48 323.52 -7.99 -39.47 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.16 Total: -0.90 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.32 Total: -1.71 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.02 Total: -44.27 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.48 Total: 0.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.48 -7.99 -39.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173527719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.457 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds