Wall clock time and date at job start Tue Mar 31 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47156 * 2 1 4 4 C 1.50695 * 109.46983 * 180.02562 * 3 2 1 5 5 N 1.29435 * 124.80643 * 90.02049 * 4 3 2 6 6 C 1.30941 * 117.36260 * 180.02562 * 5 4 3 7 7 C 1.35659 * 114.19471 * 0.02562 * 6 5 4 8 8 C 1.46680 * 126.13423 * 179.97438 * 7 6 5 9 9 O 1.21687 * 120.00164 * 171.50346 * 8 7 6 10 10 N 1.34779 * 119.99659 * 351.50151 * 8 7 6 11 11 C 1.46493 * 120.00186 * 4.02377 * 10 8 7 12 12 C 1.46500 * 119.99864 * 184.01897 * 10 8 7 13 13 H 1.09006 * 109.47455 * 0.02562 * 12 10 8 14 14 C 1.53000 * 109.47025 * 120.00163 * 12 10 8 15 15 C 1.50696 * 109.47265 * 240.00128 * 12 10 8 16 16 H 1.08002 * 120.00278 * 0.02562 * 15 12 10 17 17 C 1.37884 * 120.00310 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99546 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00290 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46891 * 60.00018 * 19 17 15 21 21 H 1.48497 * 109.46975 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47025 * 300.00149 * 19 17 15 23 23 S 1.70963 * 124.80439 * 270.34160 * 4 3 2 24 24 H 1.09003 * 109.47530 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47026 * 300.00009 * 1 2 3 26 26 H 1.08996 * 109.47191 * 60.00141 * 1 2 3 27 27 H 1.08997 * 109.46480 * 239.99803 * 2 1 3 28 28 H 1.09002 * 109.47133 * 120.00289 * 2 1 3 29 29 H 1.08993 * 109.46910 * 60.00240 * 3 2 1 30 30 H 1.08996 * 109.46956 * 300.00003 * 3 2 1 31 31 H 1.08003 * 122.90342 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47567 * 66.53309 * 11 10 8 33 33 H 1.09005 * 109.47093 * 306.53432 * 11 10 8 34 34 H 1.09001 * 109.47619 * 186.53121 * 11 10 8 35 35 H 1.09002 * 109.47389 * 60.00206 * 14 12 10 36 36 H 1.09002 * 109.47623 * 180.02562 * 14 12 10 37 37 H 1.09001 * 109.47454 * 300.00110 * 14 12 10 38 38 H 0.96996 * 120.00024 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4424 -0.0006 5 7 4.2853 1.4430 -1.0637 6 6 5.5838 1.4423 -0.8946 7 6 5.9753 1.4406 0.4042 8 6 7.3592 1.4390 0.8905 9 8 7.5878 1.5933 2.0757 10 7 8.3774 1.2667 0.0245 11 6 8.1086 1.1692 -1.4123 12 6 9.7532 1.1769 0.5200 13 1 9.7550 1.2696 1.6061 14 6 10.3511 -0.1743 0.1230 15 6 10.5769 2.2867 -0.0806 16 1 10.1212 2.9890 -0.7629 17 6 11.9125 2.4056 0.2408 18 7 12.4675 1.5501 1.0713 19 14 12.9337 3.7808 -0.5043 20 1 12.3538 5.0925 -0.1190 21 1 14.3281 3.6898 -0.0019 22 1 12.9307 3.6537 -1.9838 23 16 4.5233 1.4338 1.4027 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.2826 1.4423 -1.7181 32 1 7.7315 2.1247 -1.7771 33 1 7.3645 0.3929 -1.5909 34 1 9.0297 0.9176 -1.9381 35 1 10.3493 -0.2674 -0.9631 36 1 11.3745 -0.2414 0.4920 37 1 9.7553 -0.9771 0.5574 38 1 13.4071 1.6335 1.2972 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173527719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:36 Heat of formation + Delta-G solvation = -3.827575 kcal Electronic energy + Delta-G solvation = -19726.045297 eV Core-core repulsion = 16695.131888 eV Total energy + Delta-G solvation = -3030.913409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.45445 -40.16118 -37.27393 -36.15550 -34.93054 -32.51821 -30.72375 -28.90012 -28.19150 -27.31267 -25.27086 -23.75907 -22.57925 -21.62804 -20.41006 -18.95395 -18.52219 -17.56926 -17.20293 -16.57967 -16.24841 -16.07649 -15.44412 -15.40492 -15.17543 -14.71075 -14.50155 -14.09719 -13.86227 -13.56877 -13.07652 -12.99648 -12.95590 -12.80355 -12.76870 -12.59940 -12.23187 -12.16872 -12.11459 -12.02861 -11.62894 -11.25175 -11.18456 -10.63149 -10.54771 -10.50477 -9.95169 -9.47708 -8.16947 -6.33850 -0.77891 0.10994 0.65315 1.40606 1.43278 1.44154 1.51609 2.12743 2.25968 2.45823 3.04899 3.11376 3.60227 3.85597 4.08949 4.11320 4.16897 4.25599 4.51610 4.53808 4.67514 4.70309 4.80545 4.85569 4.91523 4.96019 4.99431 5.00418 5.25241 5.29563 5.40760 5.46680 5.53054 5.61596 5.96885 6.11231 6.53812 6.61787 6.72402 7.15215 7.38663 8.87624 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.039435 B = 0.003649 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.863078 B = 7670.563518 C = 7785.814133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.045 4.045 4 C 0.058 3.942 5 N -0.493 5.493 6 C 0.076 3.924 7 C -0.316 4.316 8 C 0.571 3.429 9 O -0.600 6.600 10 N -0.582 5.582 11 C 0.065 3.935 12 C 0.264 3.736 13 H 0.011 0.989 14 C -0.133 4.133 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.017 3.983 18 N -0.916 5.916 19 Si 0.966 3.034 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.260 1.260 23 S 0.210 5.790 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.223 0.777 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.020 0.980 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.480 -2.446 -6.201 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.086 4.086 4 C -0.216 4.216 5 N -0.207 5.207 6 C -0.082 4.082 7 C -0.440 4.440 8 C 0.359 3.641 9 O -0.484 6.484 10 N -0.311 5.311 11 C -0.077 4.077 12 C 0.162 3.838 13 H 0.029 0.971 14 C -0.192 4.192 15 C -0.581 4.581 16 H 0.080 0.920 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.791 3.209 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.185 1.185 23 S 0.469 5.531 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.239 0.761 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.645 -2.427 -4.929 22.332 hybrid contribution 1.836 0.641 -0.614 2.040 sum -19.809 -1.785 -5.544 20.647 Atomic orbital electron populations 1.21738 0.93287 1.02616 1.02836 1.21533 0.97579 0.94045 1.02479 1.20626 0.81913 0.99948 1.06124 1.28262 1.03176 0.99099 0.91091 1.66367 1.04522 1.17922 1.31903 1.23904 0.92155 0.95909 0.96202 1.25621 0.98384 1.21057 0.98957 1.17272 0.84103 0.77212 0.85502 1.90748 1.85711 1.53843 1.18124 1.48032 1.07119 1.68099 1.07843 1.22417 1.03562 1.01826 0.79860 1.18665 0.76145 0.94717 0.94286 0.97107 1.21915 1.02028 0.95154 1.00105 1.21533 0.94912 1.13155 1.28458 0.91958 1.25732 0.98796 0.98510 0.95250 1.70007 1.13139 1.37416 1.34928 0.85490 0.77255 0.78882 0.79282 1.20457 1.20846 1.18463 1.83917 0.94003 1.64770 1.10449 0.91964 0.91560 0.91811 0.92138 0.91841 0.87308 0.87371 0.76126 0.90563 0.89292 0.89298 0.92886 0.90990 0.96089 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.12 -1.51 5.92 30.59 0.18 -1.33 16 3 C -0.05 -0.65 5.79 29.85 0.17 -0.47 16 4 C 0.06 1.33 6.64 88.46 0.59 1.92 16 5 N -0.49 -13.07 10.51 -190.30 -2.00 -15.07 16 6 C 0.08 2.18 9.51 84.23 0.80 2.98 16 7 C -0.32 -11.05 6.41 23.88 0.15 -10.90 16 8 C 0.57 25.79 7.64 86.45 0.66 26.45 16 9 O -0.60 -32.49 16.31 -4.31 -0.07 -32.56 16 10 N -0.58 -25.58 2.75 -831.52 -2.29 -27.87 16 11 C 0.06 2.06 7.66 127.77 0.98 3.04 16 12 C 0.26 13.90 2.58 44.24 0.11 14.01 16 13 H 0.01 0.69 6.90 -2.38 -0.02 0.67 16 14 C -0.13 -6.42 8.96 71.98 0.64 -5.78 16 15 C -0.54 -29.57 8.24 25.60 0.21 -29.36 16 16 H 0.06 3.28 7.65 -2.91 -0.02 3.26 16 17 C 0.02 0.93 5.30 84.66 0.45 1.38 16 18 N -0.92 -52.76 11.32 21.45 0.24 -52.52 16 19 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 S 0.21 5.87 23.02 -56.49 -1.30 4.57 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.22 5.43 3.66 -2.91 -0.01 5.42 16 32 H 0.08 2.13 6.90 -2.39 -0.02 2.11 16 33 H 0.09 2.28 6.03 -2.38 -0.01 2.27 16 34 H 0.09 2.85 6.61 -2.39 -0.02 2.84 16 35 H 0.05 2.27 6.91 -2.39 -0.02 2.25 16 36 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -71.06 323.52 3.35 -67.71 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.07 Total: 9.37 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.67 Total: 1.35 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -4.05 Total: -95.45 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.07 Total: -32.56 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -1.30 Total: 4.57 kcal Total: -71.06 3.35 -67.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173527719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.882 kcal (2) G-P(sol) polarization free energy of solvation -71.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds